Nextflow workflow report

[sick_bose]

Workflow execution completed successfully!
Run times
09-Jul-2025 20:00:59 - 09-Jul-2025 21:12:39 (duration: 1h 11m 40s)
  2387 succeeded  
  0 cached  
  0 ignored  
  0 failed (0 retries)  
Nextflow command
nextflow run epi2me-labs/wf-amplicon --fastq /home/artem/amlicons_gamalea/amplicons_080725 --reads_downsampling_size 0 --reference /home/artem/amlicons_gamalea/amplicons_090625/references/Reference_Rickettsia_raoultii_BIME.fasta --out_dir /home/artem/amlicons_gamalea/amplicons_080725_result_BIME --min_read_length 380 --max_read_length 2000 --threads 128 -profile standard
CPU-Hours
62.0
Launch directory
/home/artem
Work directory
/home/artem/work
Project directory
/home/artem/.nextflow/assets/epi2me-labs/wf-amplicon
Script name
main.nf
Script ID
dec7b4a648917049bf9e3604ba0dacab
Workflow session
9e1e3829-bb13-4383-9035-d3e11dc6b765
Workflow repository
https://github.com/epi2me-labs/wf-amplicon, revision master (commit hash 1cf4682471996d82b632623577cdb9afbad83842)
Workflow profile
standard
Workflow container
[withLabel:wf_common:ontresearch/wf-common:shad28e55140f75a68f59bbecc74e880aeab16ab158, withLabel:wfamplicon:ontresearch/wf-amplicon:sha0ba67476938520e6f132759780d0a0e902925c59, withLabel:medaka:ontresearch/medaka:sha3486abaab0d3b90351617eb8622acf2028edb154]
Container engine
docker
Nextflow version
version 25.04.4, build 5950 (16-06-2025 14:23 UTC)

Resource Usage

These plots give an overview of the distribution of resource usage for each process.

CPU

Memory

Job Duration

I/O

Tasks

This table shows information about each task in the workflow. Use the search box on the right to filter rows for specific values. Clicking headers will sort the table by that value and scrolling side to side will reveal more columns.

(tasks table omitted because the dataset is too big)