Read summary

Number of reads

Number of reads after applying read length and quality filters. Read counts will also reflect host depletion and unclassified reads (kraken2 approach) and unmapped reads (minimap2 approach). Percentages are calculated from reads after the filtering.

Note that in the minimap2 approach, there are two filters based on the mapping identity and coverage that can increase the number of unclassified sequences. This table shows the unmapped reads before both filters are applied.

index Reads Unclassified|Unmapped Unclassified|Unmapped (%)
barcode02 28438.0 3338.0 11.74
barcode03 28336.0 4273.0 15.08
barcode04 42306.0 4390.0 10.38
barcode05 62254.0 20761.0 33.35
barcode06 32652.0 3754.0 11.5
barcode07 32252.0 4685.0 14.53
barcode08 46759.0 16961.0 36.27
barcode09 52005.0 6265.0 12.05
barcode10 19605.0 6424.0 32.77
barcode11 37138.0 4289.0 11.55
barcode12 38109.0 5489.0 14.4
barcode13 12662.0 3253.0 25.69
barcode14 49142.0 5696.0 11.59

Lineages

Sunburst

This visualization can be useful to interactively explore the taxonomic composition of the sample. It shows hierarchical data: each layer represents a taxonomic rank. The color indicates the abundance of that taxon in comparison with the total number of reads. Zooming into an specific taxon is possible by clicking on it.

This visualization can be useful to interactively explore the taxonomic composition of the sample. It shows hierarchical data: each layer represents a taxonomic rank. The color indicates the abundance of that taxon in comparison with the total number of reads. Zooming into an specific taxon is possible by clicking on it.

This visualization can be useful to interactively explore the taxonomic composition of the sample. It shows hierarchical data: each layer represents a taxonomic rank. The color indicates the abundance of that taxon in comparison with the total number of reads. Zooming into an specific taxon is possible by clicking on it.

This visualization can be useful to interactively explore the taxonomic composition of the sample. It shows hierarchical data: each layer represents a taxonomic rank. The color indicates the abundance of that taxon in comparison with the total number of reads. Zooming into an specific taxon is possible by clicking on it.

This visualization can be useful to interactively explore the taxonomic composition of the sample. It shows hierarchical data: each layer represents a taxonomic rank. The color indicates the abundance of that taxon in comparison with the total number of reads. Zooming into an specific taxon is possible by clicking on it.

This visualization can be useful to interactively explore the taxonomic composition of the sample. It shows hierarchical data: each layer represents a taxonomic rank. The color indicates the abundance of that taxon in comparison with the total number of reads. Zooming into an specific taxon is possible by clicking on it.

This visualization can be useful to interactively explore the taxonomic composition of the sample. It shows hierarchical data: each layer represents a taxonomic rank. The color indicates the abundance of that taxon in comparison with the total number of reads. Zooming into an specific taxon is possible by clicking on it.

This visualization can be useful to interactively explore the taxonomic composition of the sample. It shows hierarchical data: each layer represents a taxonomic rank. The color indicates the abundance of that taxon in comparison with the total number of reads. Zooming into an specific taxon is possible by clicking on it.

This visualization can be useful to interactively explore the taxonomic composition of the sample. It shows hierarchical data: each layer represents a taxonomic rank. The color indicates the abundance of that taxon in comparison with the total number of reads. Zooming into an specific taxon is possible by clicking on it.

This visualization can be useful to interactively explore the taxonomic composition of the sample. It shows hierarchical data: each layer represents a taxonomic rank. The color indicates the abundance of that taxon in comparison with the total number of reads. Zooming into an specific taxon is possible by clicking on it.

This visualization can be useful to interactively explore the taxonomic composition of the sample. It shows hierarchical data: each layer represents a taxonomic rank. The color indicates the abundance of that taxon in comparison with the total number of reads. Zooming into an specific taxon is possible by clicking on it.

This visualization can be useful to interactively explore the taxonomic composition of the sample. It shows hierarchical data: each layer represents a taxonomic rank. The color indicates the abundance of that taxon in comparison with the total number of reads. Zooming into an specific taxon is possible by clicking on it.

This visualization can be useful to interactively explore the taxonomic composition of the sample. It shows hierarchical data: each layer represents a taxonomic rank. The color indicates the abundance of that taxon in comparison with the total number of reads. Zooming into an specific taxon is possible by clicking on it.

Taxonomy

Barplot of the 9 most abundant taxa at the phylum rank in all the samples. Any remaining taxa have been collapsed under the 'Other' category to facilitate the visualization. The y-axis indicates the relative abundance of each taxon in percentages for each sample.

Barplot of the 9 most abundant taxa at the class rank in all the samples. Any remaining taxa have been collapsed under the 'Other' category to facilitate the visualization. The y-axis indicates the relative abundance of each taxon in percentages for each sample.

Barplot of the 9 most abundant taxa at the order rank in all the samples. Any remaining taxa have been collapsed under the 'Other' category to facilitate the visualization. The y-axis indicates the relative abundance of each taxon in percentages for each sample.

Barplot of the 9 most abundant taxa at the family rank in all the samples. Any remaining taxa have been collapsed under the 'Other' category to facilitate the visualization. The y-axis indicates the relative abundance of each taxon in percentages for each sample.

Barplot of the 9 most abundant taxa at the genus rank in all the samples. Any remaining taxa have been collapsed under the 'Other' category to facilitate the visualization. The y-axis indicates the relative abundance of each taxon in percentages for each sample.

Barplot of the 9 most abundant taxa at the species rank in all the samples. Any remaining taxa have been collapsed under the 'Other' category to facilitate the visualization. The y-axis indicates the relative abundance of each taxon in percentages for each sample.

Abundances

Abundance table for the phylum rank.

Only taxa whose global abundance are above the abundance_threshold parameter will appear in the table.

phylum barcode02 barcode03 barcode04 barcode05 barcode06 barcode07 barcode08 barcode09 barcode10 barcode11 barcode12 barcode13 barcode14 total superkingdom kingdom tax
Actinomycetota 5.0 0.0 0.0 0.0 1.0 0.0 1.0 2.0 1.0 0.0 0.0 0.0 1.0 11.0 Bacteria Bacillati Bacteria;Bacillati;Actinomycetota
Bacillota 2306.0 2197.0 2500.0 2831.0 2556.0 2544.0 2168.0 4636.0 998.0 2641.0 3097.0 823.0 3888.0 33185.0 Bacteria Bacillati Bacteria;Bacillati;Bacillota
Pseudomonadota 7.0 2.0 1.0 6.0 8.0 10.0 2.0 5.0 5.0 2.0 10.0 9.0 3.0 70.0 Bacteria Pseudomonadati Bacteria;Pseudomonadati;Pseudomonadota
Unknown 26120.0 26137.0 39805.0 59417.0 30087.0 29698.0 44588.0 47362.0 18601.0 34495.0 35002.0 11830.0 45250.0 448392.0 Unclassified Unknown Unclassified;Unknown;Unknown

Abundance table for the class rank.

Only taxa whose global abundance are above the abundance_threshold parameter will appear in the table.

class barcode02 barcode03 barcode04 barcode05 barcode06 barcode07 barcode08 barcode09 barcode10 barcode11 barcode12 barcode13 barcode14 total superkingdom kingdom phylum tax
Actinomycetes 5.0 0.0 0.0 0.0 1.0 0.0 1.0 2.0 1.0 0.0 0.0 0.0 1.0 11.0 Bacteria Bacillati Actinomycetota Bacteria;Bacillati;Actinomycetota;Actinomycetes
Bacilli 2306.0 2197.0 2500.0 2831.0 2556.0 2544.0 2168.0 4636.0 998.0 2641.0 3097.0 823.0 3888.0 33185.0 Bacteria Bacillati Bacillota Bacteria;Bacillati;Bacillota;Bacilli
Alphaproteobacteria 1.0 0.0 0.0 0.0 0.0 2.0 2.0 0.0 0.0 0.0 1.0 1.0 0.0 7.0 Bacteria Pseudomonadati Pseudomonadota Bacteria;Pseudomonadati;Pseudomonadota;Alphaproteobacteria
Betaproteobacteria 6.0 2.0 1.0 6.0 8.0 8.0 0.0 5.0 5.0 2.0 9.0 8.0 3.0 63.0 Bacteria Pseudomonadati Pseudomonadota Bacteria;Pseudomonadati;Pseudomonadota;Betaproteobacteria
Unknown 26120.0 26137.0 39805.0 59417.0 30087.0 29698.0 44588.0 47362.0 18601.0 34495.0 35002.0 11830.0 45250.0 448392.0 Unclassified Unknown Unknown Unclassified;Unknown;Unknown;Unknown

Abundance table for the order rank.

Only taxa whose global abundance are above the abundance_threshold parameter will appear in the table.

order barcode02 barcode03 barcode04 barcode05 barcode06 barcode07 barcode08 barcode09 barcode10 barcode11 barcode12 barcode13 barcode14 total superkingdom kingdom phylum class tax
Bifidobacteriales 5.0 0.0 0.0 0.0 1.0 0.0 1.0 2.0 1.0 0.0 0.0 0.0 1.0 11.0 Bacteria Bacillati Actinomycetota Actinomycetes Bacteria;Bacillati;Actinomycetota;Actinomycetes;Bifidobacteriales
Lactobacillales 2306.0 2197.0 2500.0 2830.0 2556.0 2544.0 2168.0 4636.0 998.0 2641.0 3097.0 823.0 3888.0 33184.0 Bacteria Bacillati Bacillota Bacilli Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales
Hyphomicrobiales 1.0 0.0 0.0 0.0 0.0 2.0 2.0 0.0 0.0 0.0 1.0 0.0 0.0 6.0 Bacteria Pseudomonadati Pseudomonadota Alphaproteobacteria Bacteria;Pseudomonadati;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales
Burkholderiales 6.0 2.0 1.0 6.0 8.0 8.0 0.0 5.0 5.0 2.0 9.0 8.0 3.0 63.0 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Bacteria;Pseudomonadati;Pseudomonadota;Betaproteobacteria;Burkholderiales
Unknown 26120.0 26137.0 39805.0 59417.0 30087.0 29698.0 44588.0 47362.0 18601.0 34495.0 35002.0 11830.0 45250.0 448392.0 Unclassified Unknown Unknown Unknown Unclassified;Unknown;Unknown;Unknown;Unknown

Abundance table for the family rank.

Only taxa whose global abundance are above the abundance_threshold parameter will appear in the table.

family barcode02 barcode03 barcode04 barcode05 barcode06 barcode07 barcode08 barcode09 barcode10 barcode11 barcode12 barcode13 barcode14 total superkingdom kingdom phylum class order tax
Bifidobacteriaceae 5.0 0.0 0.0 0.0 1.0 0.0 1.0 2.0 1.0 0.0 0.0 0.0 1.0 11.0 Bacteria Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bacteria;Bacillati;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae
Enterococcaceae 2285.0 0.0 2.0 5.0 0.0 0.0 3.0 4.0 1.0 4.0 0.0 525.0 3.0 2832.0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Enterococcaceae
Lactobacillaceae 16.0 2190.0 1372.0 2392.0 1511.0 2542.0 2069.0 4628.0 994.0 1519.0 2805.0 80.0 3879.0 25997.0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae
Streptococcaceae 5.0 7.0 1126.0 433.0 1045.0 2.0 96.0 4.0 3.0 1118.0 292.0 218.0 6.0 4355.0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Streptococcaceae
Nitrobacteraceae 1.0 0.0 0.0 0.0 0.0 1.0 2.0 0.0 0.0 0.0 0.0 0.0 0.0 4.0 Bacteria Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Bacteria;Pseudomonadati;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Nitrobacteraceae
Phyllobacteriaceae 0.0 0.0 0.0 0.0 0.0 1.0 0.0 0.0 0.0 0.0 1.0 0.0 0.0 2.0 Bacteria Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Bacteria;Pseudomonadati;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Phyllobacteriaceae
Burkholderiaceae 5.0 1.0 0.0 4.0 7.0 8.0 0.0 4.0 4.0 2.0 7.0 4.0 1.0 47.0 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Bacteria;Pseudomonadati;Pseudomonadota;Betaproteobacteria;Burkholderiales;Burkholderiaceae
Burkholderiales_Incertae_sedis 1.0 1.0 1.0 2.0 1.0 0.0 0.0 1.0 1.0 0.0 2.0 4.0 2.0 16.0 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Bacteria;Pseudomonadati;Pseudomonadota;Betaproteobacteria;Burkholderiales;Burkholderiales_Incertae_sedis
Unknown 26120.0 26137.0 39805.0 59417.0 30087.0 29698.0 44588.0 47362.0 18601.0 34495.0 35002.0 11830.0 45250.0 448392.0 Unclassified Unknown Unknown Unknown Unknown Unclassified;Unknown;Unknown;Unknown;Unknown;Unknown

Abundance table for the genus rank.

Only taxa whose global abundance are above the abundance_threshold parameter will appear in the table.

genus barcode02 barcode03 barcode04 barcode05 barcode06 barcode07 barcode08 barcode09 barcode10 barcode11 barcode12 barcode13 barcode14 total superkingdom kingdom phylum class order family tax
Bifidobacterium 5.0 0.0 0.0 0.0 1.0 0.0 1.0 2.0 1.0 0.0 0.0 0.0 1.0 11.0 Bacteria Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bacteria;Bacillati;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium
Enterococcus 2285.0 0.0 2.0 5.0 0.0 0.0 3.0 4.0 1.0 4.0 0.0 525.0 3.0 2832.0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus
Lacticaseibacillus 7.0 2174.0 241.0 1542.0 1502.0 2.0 361.0 4.0 129.0 981.0 8.0 10.0 3871.0 10832.0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus
Lactiplantibacillus 5.0 6.0 138.0 184.0 6.0 4.0 1510.0 5.0 2.0 4.0 2555.0 18.0 3.0 4440.0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus
Lactobacillus 4.0 7.0 992.0 385.0 3.0 752.0 85.0 4613.0 861.0 534.0 101.0 28.0 4.0 8369.0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus
Latilactobacillus 0.0 0.0 0.0 0.0 0.0 0.0 22.0 0.0 0.0 0.0 0.0 0.0 0.0 22.0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus
Lentilactobacillus 0.0 0.0 0.0 0.0 0.0 0.0 86.0 1.0 0.0 0.0 0.0 1.0 0.0 88.0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus
Ligilactobacillus 0.0 0.0 1.0 273.0 0.0 0.0 0.0 0.0 1.0 0.0 0.0 1.0 0.0 276.0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Ligilactobacillus
Limosilactobacillus 0.0 3.0 0.0 8.0 0.0 1784.0 5.0 5.0 1.0 0.0 141.0 22.0 1.0 1970.0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus
Lactococcus 1.0 2.0 354.0 174.0 2.0 1.0 61.0 1.0 0.0 0.0 4.0 190.0 1.0 791.0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus
Streptococcus 4.0 5.0 772.0 259.0 1043.0 1.0 35.0 3.0 3.0 1118.0 288.0 28.0 5.0 3564.0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus
Afipia 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 Bacteria Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bacteria;Pseudomonadati;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Nitrobacteraceae;Afipia
Rhodopseudomonas 0.0 0.0 0.0 0.0 0.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 Bacteria Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bacteria;Pseudomonadati;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Nitrobacteraceae;Rhodopseudomonas
Mesorhizobium 0.0 0.0 0.0 0.0 0.0 1.0 0.0 0.0 0.0 0.0 1.0 0.0 0.0 2.0 Bacteria Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Bacteria;Pseudomonadati;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Phyllobacteriaceae;Mesorhizobium
Cupriavidus 5.0 1.0 0.0 4.0 7.0 8.0 0.0 4.0 4.0 2.0 7.0 3.0 1.0 46.0 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Bacteria;Pseudomonadati;Pseudomonadota;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Cupriavidus
Aquabacterium 1.0 1.0 1.0 2.0 1.0 0.0 0.0 1.0 1.0 0.0 2.0 4.0 2.0 16.0 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiales_Incertae_sedis Bacteria;Pseudomonadati;Pseudomonadota;Betaproteobacteria;Burkholderiales;Burkholderiales_Incertae_sedis;Aquabacterium
Unknown 26120.0 26137.0 39805.0 59417.0 30087.0 29698.0 44588.0 47362.0 18601.0 34495.0 35002.0 11830.0 45250.0 448392.0 Unclassified Unknown Unknown Unknown Unknown Unknown Unclassified;Unknown;Unknown;Unknown;Unknown;Unknown;Unknown

Abundance table for the species rank.

Only taxa whose global abundance are above the abundance_threshold parameter will appear in the table.

species barcode02 barcode03 barcode04 barcode05 barcode06 barcode07 barcode08 barcode09 barcode10 barcode11 barcode12 barcode13 barcode14 total superkingdom kingdom phylum class order family genus tax
Bifidobacterium animalis 0.0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 0.0 0.0 0.0 0.0 1.0 4.0 Bacteria Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bacteria;Bacillati;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium animalis
Bifidobacterium longum 5.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 0.0 0.0 0.0 6.0 Bacteria Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bacteria;Bacillati;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium longum
Enterococcus durans 35.0 0.0 1.0 1.0 0.0 0.0 1.0 0.0 1.0 1.0 0.0 16.0 1.0 57.0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus durans
Enterococcus faecium 2174.0 0.0 1.0 4.0 0.0 0.0 1.0 4.0 0.0 3.0 0.0 489.0 2.0 2678.0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus faecium
Enterococcus hirae 3.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 0.0 5.0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus hirae
Enterococcus lactis 72.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 0.0 0.0 0.0 18.0 0.0 91.0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus lactis
Lacticaseibacillus casei 0.0 2.0 92.0 11.0 1.0 0.0 6.0 0.0 6.0 4.0 0.0 3.0 4.0 129.0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus;Lacticaseibacillus casei
Lacticaseibacillus chiayiensis 1.0 6.0 34.0 6.0 3.0 0.0 5.0 0.0 17.0 7.0 0.0 1.0 6.0 86.0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus;Lacticaseibacillus chiayiensis
Lacticaseibacillus paracasei 0.0 1424.0 7.0 443.0 12.0 1.0 134.0 0.0 1.0 18.0 3.0 4.0 17.0 2064.0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus;Lacticaseibacillus paracasei
Lacticaseibacillus rhamnosus 5.0 729.0 98.0 1073.0 1481.0 1.0 207.0 3.0 5.0 945.0 5.0 2.0 3840.0 8394.0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus;Lacticaseibacillus rhamnosus
Lacticaseibacillus zeae 1.0 13.0 10.0 9.0 5.0 0.0 9.0 1.0 100.0 7.0 0.0 0.0 4.0 159.0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus;Lacticaseibacillus zeae
Lactiplantibacillus daoliensis 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 0.0 0.0 2.0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus;Lactiplantibacillus daoliensis
Lactiplantibacillus paraplantarum 0.0 0.0 4.0 4.0 2.0 0.0 54.0 0.0 0.0 0.0 9.0 0.0 0.0 73.0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus;Lactiplantibacillus paraplantarum
Lactiplantibacillus pentosus 0.0 1.0 51.0 102.0 2.0 2.0 505.0 2.0 0.0 1.0 1201.0 5.0 1.0 1873.0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus;Lactiplantibacillus pentosus
Lactiplantibacillus plajomi 0.0 0.0 1.0 2.0 0.0 0.0 15.0 0.0 0.0 0.0 0.0 0.0 0.0 18.0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus;Lactiplantibacillus plajomi
Lactiplantibacillus plantarum 5.0 5.0 82.0 76.0 2.0 2.0 936.0 3.0 2.0 3.0 1342.0 13.0 2.0 2473.0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus;Lactiplantibacillus plantarum
Lactobacillus acidophilus 3.0 5.0 989.0 4.0 1.0 744.0 75.0 4612.0 3.0 531.0 100.0 17.0 4.0 7088.0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus acidophilus
Lactobacillus crispatus 0.0 0.0 0.0 0.0 0.0 3.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 3.0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus crispatus
Lactobacillus delbrueckii 0.0 0.0 1.0 209.0 0.0 2.0 4.0 1.0 0.0 0.0 0.0 6.0 0.0 223.0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus delbrueckii
Lactobacillus gallinarum 0.0 1.0 0.0 104.0 0.0 0.0 4.0 0.0 0.0 0.0 0.0 3.0 0.0 112.0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus gallinarum
Lactobacillus gasseri 0.0 1.0 1.0 0.0 1.0 0.0 1.0 0.0 67.0 0.0 0.0 1.0 0.0 72.0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus gasseri
Lactobacillus helveticus 1.0 0.0 0.0 66.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 0.0 0.0 68.0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus helveticus
Lactobacillus paragasseri 0.0 0.0 1.0 1.0 1.0 0.0 1.0 0.0 788.0 2.0 1.0 1.0 0.0 796.0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus paragasseri
Lactobacillus psittaci 0.0 0.0 0.0 0.0 0.0 3.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 3.0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus psittaci
Lactobacillus taiwanensis 0.0 0.0 0.0 1.0 0.0 0.0 0.0 0.0 3.0 0.0 0.0 0.0 0.0 4.0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus taiwanensis
Latilactobacillus sakei 0.0 0.0 0.0 0.0 0.0 0.0 22.0 0.0 0.0 0.0 0.0 0.0 0.0 22.0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Latilactobacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus;Latilactobacillus sakei
Lentilactobacillus buchneri 0.0 0.0 0.0 0.0 0.0 0.0 68.0 1.0 0.0 0.0 0.0 0.0 0.0 69.0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus;Lentilactobacillus buchneri
Lentilactobacillus kisonensis 0.0 0.0 0.0 0.0 0.0 0.0 3.0 0.0 0.0 0.0 0.0 0.0 0.0 3.0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus;Lentilactobacillus kisonensis
Lentilactobacillus parakefiri 0.0 0.0 0.0 0.0 0.0 0.0 4.0 0.0 0.0 0.0 0.0 0.0 0.0 4.0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus;Lentilactobacillus parakefiri
Lentilactobacillus rapi 0.0 0.0 0.0 0.0 0.0 0.0 6.0 0.0 0.0 0.0 0.0 0.0 0.0 6.0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus;Lentilactobacillus rapi
Lentilactobacillus sunkii 0.0 0.0 0.0 0.0 0.0 0.0 3.0 0.0 0.0 0.0 0.0 1.0 0.0 4.0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus;Lentilactobacillus sunkii
Ligilactobacillus salivarius 0.0 0.0 1.0 273.0 0.0 0.0 0.0 0.0 1.0 0.0 0.0 1.0 0.0 276.0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Ligilactobacillus;Ligilactobacillus salivarius
Limosilactobacillus agrestis 0.0 0.0 0.0 0.0 0.0 42.0 1.0 1.0 0.0 0.0 1.0 0.0 0.0 45.0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus;Limosilactobacillus agrestis
Limosilactobacillus balticus 0.0 1.0 0.0 1.0 0.0 226.0 2.0 0.0 1.0 0.0 0.0 0.0 0.0 231.0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus;Limosilactobacillus balticus
Limosilactobacillus fermentum 0.0 0.0 0.0 6.0 0.0 0.0 1.0 1.0 0.0 0.0 139.0 22.0 1.0 170.0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus;Limosilactobacillus fermentum
Limosilactobacillus reuteri 0.0 2.0 0.0 1.0 0.0 1516.0 1.0 3.0 0.0 0.0 1.0 0.0 0.0 1524.0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus;Limosilactobacillus reuteri
Lactococcus cremoris 0.0 1.0 60.0 21.0 0.0 0.0 9.0 0.0 0.0 0.0 3.0 4.0 0.0 98.0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus;Lactococcus cremoris
Lactococcus lactis 1.0 1.0 294.0 153.0 2.0 1.0 52.0 1.0 0.0 0.0 1.0 186.0 1.0 693.0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus;Lactococcus lactis
Streptococcus salivarius 2.0 0.0 1.0 1.0 3.0 0.0 0.0 0.0 0.0 7.0 3.0 1.0 0.0 18.0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus salivarius
Streptococcus thermophilus 2.0 5.0 770.0 258.0 1038.0 1.0 35.0 3.0 3.0 1110.0 285.0 27.0 5.0 3542.0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus thermophilus
Streptococcus vestibularis 0.0 0.0 0.0 0.0 2.0 0.0 0.0 0.0 0.0 1.0 0.0 0.0 0.0 3.0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus vestibularis
Afipia broomeae 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 Bacteria Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Afipia Bacteria;Pseudomonadati;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Nitrobacteraceae;Afipia;Afipia broomeae
Rhodopseudomonas telluris 0.0 0.0 0.0 0.0 0.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 Bacteria Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Rhodopseudomonas Bacteria;Pseudomonadati;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Nitrobacteraceae;Rhodopseudomonas;Rhodopseudomonas telluris
Cupriavidus agavae 2.0 1.0 0.0 4.0 6.0 7.0 0.0 2.0 2.0 2.0 7.0 3.0 1.0 37.0 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Bacteria;Pseudomonadati;Pseudomonadota;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Cupriavidus;Cupriavidus agavae
Cupriavidus metallidurans 3.0 0.0 0.0 0.0 1.0 1.0 0.0 2.0 2.0 0.0 0.0 0.0 0.0 9.0 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Bacteria;Pseudomonadati;Pseudomonadota;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Cupriavidus;Cupriavidus metallidurans
Aquabacterium citratiphilum 1.0 1.0 1.0 2.0 1.0 0.0 0.0 1.0 1.0 0.0 2.0 4.0 2.0 16.0 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiales_Incertae_sedis Aquabacterium Bacteria;Pseudomonadati;Pseudomonadota;Betaproteobacteria;Burkholderiales;Burkholderiales_Incertae_sedis;Aquabacterium;Aquabacterium citratiphilum
Unknown 26120.0 26137.0 39805.0 59417.0 30087.0 29698.0 44588.0 47362.0 18601.0 34495.0 35002.0 11830.0 45250.0 448392.0 Unclassified Unknown Unknown Unknown Unknown Unknown Unknown Unclassified;Unknown;Unknown;Unknown;Unknown;Unknown;Unknown;Unknown

Rarefied abundance table for the phylum rank.

All samples have been randomly subsetted to have the same number of reads.

phylum barcode02 barcode03 barcode04 barcode05 barcode06 barcode07 barcode08 barcode09 barcode10 barcode11 barcode12 barcode13 barcode14 total superkingdom kingdom tax
Actinomycetota 2 0 0 0 0 0 0 1 1 0 0 0 0 0 Bacteria Bacillati Bacteria;Bacillati;Actinomycetota
Bacillota 983 929 700 555 932 963 589 1076 607 889 1006 780 908 849 Bacteria Bacillati Bacteria;Bacillati;Bacillota
Pseudomonadota 2 2 0 3 3 3 0 2 3 1 3 9 1 2 Bacteria Pseudomonadati Bacteria;Pseudomonadati;Pseudomonadota
Unknown 11041 11097 11328 11470 11093 11062 11439 10949 11417 11138 11019 11239 11119 11177 Unclassified Unknown Unclassified;Unknown;Unknown

Rarefied abundance table for the class rank.

All samples have been randomly subsetted to have the same number of reads.

class barcode02 barcode03 barcode04 barcode05 barcode06 barcode07 barcode08 barcode09 barcode10 barcode11 barcode12 barcode13 barcode14 total superkingdom kingdom phylum tax
Actinomycetes 2 0 0 0 0 0 1 0 0 0 0 0 1 0 Bacteria Bacillati Actinomycetota Bacteria;Bacillati;Actinomycetota;Actinomycetes
Bacilli 962 934 677 559 951 926 539 1068 634 848 996 778 954 835 Bacteria Bacillati Bacillota Bacteria;Bacillati;Bacillota;Bacilli
Alphaproteobacteria 0 0 0 0 0 1 1 0 0 0 0 1 0 0 Bacteria Pseudomonadati Pseudomonadota Bacteria;Pseudomonadati;Pseudomonadota;Alphaproteobacteria
Betaproteobacteria 2 2 1 0 2 2 0 3 3 1 1 8 1 2 Bacteria Pseudomonadati Pseudomonadota Bacteria;Pseudomonadati;Pseudomonadota;Betaproteobacteria
Unknown 11062 11092 11350 11469 11075 11099 11487 10957 11391 11179 11031 11241 11072 11191 Unclassified Unknown Unknown Unclassified;Unknown;Unknown;Unknown

Rarefied abundance table for the order rank.

All samples have been randomly subsetted to have the same number of reads.

order barcode02 barcode03 barcode04 barcode05 barcode06 barcode07 barcode08 barcode09 barcode10 barcode11 barcode12 barcode13 barcode14 total superkingdom kingdom phylum class tax
Bifidobacteriales 2 0 0 0 1 0 0 1 1 0 0 0 1 0 Bacteria Bacillati Actinomycetota Actinomycetes Bacteria;Bacillati;Actinomycetota;Actinomycetes;Bifidobacteriales
Lactobacillales 974 925 736 514 969 936 591 1073 624 852 1003 781 992 847 Bacteria Bacillati Bacillota Bacilli Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales
Hyphomicrobiales 0 0 0 0 0 0 1 0 0 0 0 0 0 0 Bacteria Pseudomonadati Pseudomonadota Alphaproteobacteria Bacteria;Pseudomonadati;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales
Burkholderiales 5 0 0 0 2 1 0 2 2 1 2 8 1 1 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Bacteria;Pseudomonadati;Pseudomonadota;Betaproteobacteria;Burkholderiales
Unknown 11046 11102 11291 11513 11055 11090 11435 10951 11400 11174 11022 11238 11033 11179 Unclassified Unknown Unknown Unknown Unclassified;Unknown;Unknown;Unknown;Unknown

Rarefied abundance table for the family rank.

All samples have been randomly subsetted to have the same number of reads.

family barcode02 barcode03 barcode04 barcode05 barcode06 barcode07 barcode08 barcode09 barcode10 barcode11 barcode12 barcode13 barcode14 total superkingdom kingdom phylum class order tax
Bifidobacteriaceae 2 0 0 0 0 0 0 0 1 0 0 0 0 0 Bacteria Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bacteria;Bacillati;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae
Enterococcaceae 950 0 2 0 0 0 0 1 1 2 0 495 1 67 Bacteria Bacillati Bacillota Bacilli Lactobacillales Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Enterococcaceae
Lactobacillaceae 6 933 408 467 564 943 570 1085 605 484 914 78 973 603 Bacteria Bacillati Bacillota Bacilli Lactobacillales Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae
Streptococcaceae 1 2 327 84 381 1 22 2 0 372 95 206 3 102 Bacteria Bacillati Bacillota Bacilli Lactobacillales Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Streptococcaceae
Nitrobacteraceae 1 0 0 0 0 0 0 0 0 0 0 0 0 0 Bacteria Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Bacteria;Pseudomonadati;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Nitrobacteraceae
Phyllobacteriaceae 0 0 0 0 0 1 0 0 0 0 0 0 0 0 Bacteria Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Bacteria;Pseudomonadati;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Phyllobacteriaceae
Burkholderiaceae 0 1 0 1 2 4 0 2 2 0 3 4 0 0 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Bacteria;Pseudomonadati;Pseudomonadota;Betaproteobacteria;Burkholderiales;Burkholderiaceae
Burkholderiales_Incertae_sedis 0 0 1 0 0 0 0 0 1 0 0 3 1 0 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Bacteria;Pseudomonadati;Pseudomonadota;Betaproteobacteria;Burkholderiales;Burkholderiales_Incertae_sedis
Unknown 11067 11091 11289 11475 11080 11078 11435 10937 11417 11169 11015 11241 11049 11255 Unclassified Unknown Unknown Unknown Unknown Unclassified;Unknown;Unknown;Unknown;Unknown;Unknown

Rarefied abundance table for the genus rank.

All samples have been randomly subsetted to have the same number of reads.

genus barcode02 barcode03 barcode04 barcode05 barcode06 barcode07 barcode08 barcode09 barcode10 barcode11 barcode12 barcode13 barcode14 total superkingdom kingdom phylum class order family tax
Bifidobacterium 2 0 0 0 1 0 0 2 1 0 0 0 0 1 Bacteria Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bacteria;Bacillati;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium
Enterococcus 968 0 1 1 0 0 0 1 0 2 0 501 2 64 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus
Lacticaseibacillus 3 940 73 292 569 0 100 2 93 328 2 10 950 247 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus
Lactiplantibacillus 2 4 28 27 2 1 414 0 2 1 777 18 1 107 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus
Lactobacillus 1 2 270 87 1 279 24 1092 526 171 34 24 2 219 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus
Latilactobacillus 0 0 0 0 0 0 8 0 0 0 0 0 0 0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus
Lentilactobacillus 0 0 0 0 0 0 25 0 0 0 0 1 0 2 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus
Ligilactobacillus 0 0 1 58 0 0 0 0 0 0 0 1 0 4 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Ligilactobacillus
Limosilactobacillus 0 0 0 0 0 649 0 0 0 0 46 19 1 53 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus
Lactococcus 1 1 105 32 1 0 17 0 0 0 2 182 1 29 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus
Streptococcus 1 2 204 45 410 0 4 2 3 359 95 27 0 90 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus
Afipia 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Bacteria Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bacteria;Pseudomonadati;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Nitrobacteraceae;Afipia
Rhodopseudomonas 0 0 0 0 0 0 1 0 0 0 0 0 0 0 Bacteria Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bacteria;Pseudomonadati;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Nitrobacteraceae;Rhodopseudomonas
Mesorhizobium 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Bacteria Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Bacteria;Pseudomonadati;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Phyllobacteriaceae;Mesorhizobium
Cupriavidus 2 1 0 0 3 3 0 2 3 1 3 2 0 3 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Bacteria;Pseudomonadati;Pseudomonadota;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Cupriavidus
Aquabacterium 0 0 0 0 1 0 0 0 1 0 1 4 0 0 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiales_Incertae_sedis Bacteria;Pseudomonadati;Pseudomonadota;Betaproteobacteria;Burkholderiales;Burkholderiales_Incertae_sedis;Aquabacterium
Unknown 11047 11077 11345 11485 11039 11095 11434 10926 11398 11165 11067 11238 11070 11208 Unclassified Unknown Unknown Unknown Unknown Unknown Unclassified;Unknown;Unknown;Unknown;Unknown;Unknown;Unknown

Rarefied abundance table for the species rank.

All samples have been randomly subsetted to have the same number of reads.

species barcode02 barcode03 barcode04 barcode05 barcode06 barcode07 barcode08 barcode09 barcode10 barcode11 barcode12 barcode13 barcode14 total superkingdom kingdom phylum class order family genus tax
Bifidobacterium animalis 0 0 0 0 0 0 0 1 0 0 0 0 0 0 Bacteria Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bacteria;Bacillati;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium animalis
Bifidobacterium longum 3 0 0 0 0 0 0 0 0 0 0 0 0 0 Bacteria Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bacteria;Bacillati;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium longum
Enterococcus durans 15 0 0 1 0 0 1 0 1 1 0 15 0 2 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus durans
Enterococcus faecium 958 0 0 2 0 0 0 0 0 2 0 462 0 60 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus faecium
Enterococcus hirae 2 0 0 0 0 0 0 0 0 0 0 2 0 0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus hirae
Enterococcus lactis 23 0 0 0 0 0 1 0 0 0 0 17 0 1 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus lactis
Lacticaseibacillus casei 0 1 26 2 0 0 1 0 4 1 0 3 1 5 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus;Lacticaseibacillus casei
Lacticaseibacillus chiayiensis 0 2 8 0 1 0 2 0 13 2 0 1 2 4 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus;Lacticaseibacillus chiayiensis
Lacticaseibacillus paracasei 0 597 2 81 4 0 39 0 1 7 0 3 5 39 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus;Lacticaseibacillus paracasei
Lacticaseibacillus rhamnosus 2 315 30 200 581 1 59 1 4 322 3 2 907 206 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus;Lacticaseibacillus rhamnosus
Lacticaseibacillus zeae 1 5 3 2 1 0 4 0 53 2 0 0 1 1 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus;Lacticaseibacillus zeae
Lactiplantibacillus daoliensis 0 0 0 0 0 0 0 0 0 0 1 0 0 0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus;Lactiplantibacillus daoliensis
Lactiplantibacillus paraplantarum 0 0 0 1 1 0 9 0 0 0 5 0 0 2 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus;Lactiplantibacillus paraplantarum
Lactiplantibacillus pentosus 0 0 14 14 1 0 130 0 0 0 405 5 0 45 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus;Lactiplantibacillus pentosus
Lactiplantibacillus plajomi 0 0 0 1 0 0 6 0 0 0 0 0 0 2 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus;Lactiplantibacillus plajomi
Lactiplantibacillus plantarum 1 4 20 19 1 1 243 1 2 0 453 13 0 65 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus;Lactiplantibacillus plantarum
Lactobacillus acidophilus 2 0 254 0 0 281 17 1060 2 172 30 14 2 148 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus acidophilus
Lactobacillus crispatus 0 0 0 0 0 2 0 0 0 0 0 0 0 0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus crispatus
Lactobacillus delbrueckii 0 0 0 39 0 0 2 1 0 0 0 5 0 6 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus delbrueckii
Lactobacillus gallinarum 0 0 0 26 0 0 3 0 0 0 0 3 0 1 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus gallinarum
Lactobacillus gasseri 0 1 1 0 1 0 0 0 40 0 0 1 0 2 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus gasseri
Lactobacillus helveticus 1 0 0 12 0 0 0 0 0 1 0 0 0 3 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus helveticus
Lactobacillus paragasseri 0 0 0 0 0 0 0 0 468 0 1 1 0 32 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus paragasseri
Lactobacillus psittaci 0 0 0 0 0 1 0 0 0 0 0 0 0 0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus psittaci
Lactobacillus taiwanensis 0 0 0 0 0 0 0 0 3 0 0 0 0 0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus taiwanensis
Latilactobacillus sakei 0 0 0 0 0 0 3 0 0 0 0 0 0 0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Latilactobacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus;Latilactobacillus sakei
Lentilactobacillus buchneri 0 0 0 0 0 0 15 0 0 0 0 0 0 2 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus;Lentilactobacillus buchneri
Lentilactobacillus kisonensis 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus;Lentilactobacillus kisonensis
Lentilactobacillus parakefiri 0 0 0 0 0 0 2 0 0 0 0 0 0 0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus;Lentilactobacillus parakefiri
Lentilactobacillus rapi 0 0 0 0 0 0 2 0 0 0 0 0 0 0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus;Lentilactobacillus rapi
Lentilactobacillus sunkii 0 0 0 0 0 0 0 0 0 0 0 1 0 0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus;Lentilactobacillus sunkii
Ligilactobacillus salivarius 0 0 0 41 0 0 0 0 1 0 0 1 0 3 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Ligilactobacillus;Ligilactobacillus salivarius
Limosilactobacillus agrestis 0 0 0 0 0 19 0 1 0 0 1 0 0 0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus;Limosilactobacillus agrestis
Limosilactobacillus balticus 0 0 0 0 0 78 0 0 1 0 0 0 0 5 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus;Limosilactobacillus balticus
Limosilactobacillus fermentum 0 0 0 2 0 0 0 0 0 0 50 22 0 2 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus;Limosilactobacillus fermentum
Limosilactobacillus reuteri 0 1 0 0 0 605 0 1 0 0 1 0 0 34 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus;Limosilactobacillus reuteri
Lactococcus cremoris 0 0 11 3 0 0 2 0 0 0 1 3 0 3 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus;Lactococcus cremoris
Lactococcus lactis 1 0 85 26 2 0 14 1 0 0 0 178 0 19 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus;Lactococcus lactis
Streptococcus salivarius 0 0 0 0 0 0 0 0 0 3 0 0 0 0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus salivarius
Streptococcus thermophilus 1 2 218 45 391 0 8 0 2 345 95 26 0 113 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus thermophilus
Streptococcus vestibularis 0 0 0 0 1 0 0 0 0 0 0 0 0 0 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Bacteria;Bacillati;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus vestibularis
Afipia broomeae 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Bacteria Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Afipia Bacteria;Pseudomonadati;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Nitrobacteraceae;Afipia;Afipia broomeae
Rhodopseudomonas telluris 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Bacteria Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Rhodopseudomonas Bacteria;Pseudomonadati;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Nitrobacteraceae;Rhodopseudomonas;Rhodopseudomonas telluris
Cupriavidus agavae 1 0 0 1 2 2 0 0 2 1 1 3 0 1 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Bacteria;Pseudomonadati;Pseudomonadota;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Cupriavidus;Cupriavidus agavae
Cupriavidus metallidurans 1 0 0 0 1 0 0 1 0 0 0 0 0 0 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Bacteria;Pseudomonadati;Pseudomonadota;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Cupriavidus;Cupriavidus metallidurans
Aquabacterium citratiphilum 0 0 0 2 0 0 0 1 1 0 2 4 1 1 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiales_Incertae_sedis Aquabacterium Bacteria;Pseudomonadati;Pseudomonadota;Betaproteobacteria;Burkholderiales;Burkholderiales_Incertae_sedis;Aquabacterium;Aquabacterium citratiphilum
Unknown 11015 11099 11355 11507 11039 11037 11464 10958 11429 11168 10978 11242 11108 11220 Unclassified Unknown Unknown Unknown Unknown Unknown Unknown Unclassified;Unknown;Unknown;Unknown;Unknown;Unknown;Unknown;Unknown

Alpha Diversity

Sample diversity indices. Indices are calculated from the original abundance table.

Indices barcode02 barcode03 barcode04 barcode05 barcode06 barcode07 barcode08 barcode09 barcode10 barcode11 barcode12 barcode13 barcode14 total
Berger Parker index 0.92 0.92 0.94 0.95 0.92 0.92 0.95 0.91 0.95 0.93 0.92 0.93 0.92 0.93
Effective number of species 1.36 1.4 1.38 1.32 1.4 1.43 1.31 1.36 1.28 1.41 1.47 1.4 1.33 1.51
Fisher's alpha 6.98 6.98 6.62 6.31 6.85 6.86 6.53 6.45 7.35 6.73 6.71 7.85 6.49 5.06
Inverse Simpson's index 6.64 6.85 8.79 11.28 6.76 6.7 11.09 6.15 10.19 7.38 6.49 7.98 6.85 7.54
Pielou's evenness 0.1 0.12 0.1 0.08 0.11 0.12 0.08 0.11 0.08 0.12 0.13 0.1 0.1 0.1
Richness 20.0 18.0 23.0 29.0 20.0 18.0 36.0 18.0 19.0 17.0 20.0 27.0 17.0 58.0
Shannon diversity index 0.31 0.33 0.32 0.28 0.34 0.36 0.27 0.31 0.25 0.34 0.39 0.34 0.28 0.41
Simpson's index 0.15 0.15 0.11 0.09 0.15 0.15 0.09 0.16 0.1 0.14 0.15 0.13 0.15 0.13
Total counts 28438.0 28336.0 42306.0 62254.0 32652.0 32252.0 46759.0 52005.0 19605.0 37138.0 38109.0 12662.0 49142.0 481658.0
Note that the taxon 'Unknown' is considered as a unique taxon.

Sample-based rarefaction curves to display observed taxa richness. Sample size shows the number of reads sampled from the total amount of reads analyzed during the real time analysis. The Y-axis indicates the number of unique taxa at the last analyzed taxonomic rank in those subsampled reads.

Note that Unknown taxon is considered as a unique taxon.
This plot includes all the counts (except Unknown), before applying any filter threshold based on abundances.
This plot includes all the counts (except Unknown), before applying any filter threshold based on abundances.
This plot includes all the counts (except Unknown), before applying any filter threshold based on abundances.
This plot includes all the counts (except Unknown), before applying any filter threshold based on abundances.
This plot includes all the counts (except Unknown), before applying any filter threshold based on abundances.
This plot includes all the counts (except Unknown), before applying any filter threshold based on abundances.
This plot includes all the counts (except Unknown), before applying any filter threshold based on abundances.
This plot includes all the counts (except Unknown), before applying any filter threshold based on abundances.
This plot includes all the counts (except Unknown), before applying any filter threshold based on abundances.
This plot includes all the counts (except Unknown), before applying any filter threshold based on abundances.
This plot includes all the counts (except Unknown), before applying any filter threshold based on abundances.
This plot includes all the counts (except Unknown), before applying any filter threshold based on abundances.
This plot includes all the counts (except Unknown), before applying any filter threshold based on abundances.

Alignment Statistics

Only taxa present in the abundance table above the abundance_threshold parameter appear in the table.

species reference ref length number of reads covbases % coverage mean depth mean baseq mean MAPQ taxid superkingdom kingdom phylum class order family genus mean sd depth CV % reads
Aquabacterium citratiphilum NR_024871.1 1418 7 1418 100.0 3.93 30.7 38.6 70582 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales unclassified Burkholderiales family Aquabacterium 3.93 1.69 0.43 0.03
Lacticaseibacillus paracasei NR_025880.1 1522 42 1512 99.34 10.64 34.9 0.79 1597 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 10.64 8.82 0.83 0.17
Cupriavidus metallidurans NR_027607.1 1493 1 283 18.96 0.19 31.0 0.0 266264 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus 0.19 0.39 2.07 0.0
Ligilactobacillus salivarius NR_028725.2 1542 1 253 16.41 0.16 39.4 1.0 1624 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus 0.16 0.37 2.26 0.0
Lactiplantibacillus pentosus NR_029133.1 1519 23 1509 99.34 6.8 32.4 0.22 1589 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 6.8 3.18 0.47 0.09
Afipia broomeae NR_029200.1 1401 1 1391 99.29 0.99 42.2 60.0 56946 Bacteria Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Afipia 0.99 0.08 0.08 0.0
Enterococcus durans NR_036922.1 1534 3990 1514 98.7 1042.75 32.5 8.2 53345 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 1042.75 1168.67 1.12 15.9
Enterococcus hirae NR_037082.1 1535 58 1511 98.44 11.18 18.1 0.59 1354 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 11.18 11.93 1.07 0.23
Lacticaseibacillus zeae NR_037122.1 1522 12 1505 98.88 3.18 28.3 0.25 57037 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 3.18 2.67 0.84 0.05
Lactococcus cremoris NR_040954.1 1499 1 189 12.61 0.13 36.3 0.0 1359 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 0.13 0.33 2.63 0.0
Lactococcus lactis NR_040956.1 1499 3 1478 98.6 1.24 38.5 0.0 203404 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 1.24 0.46 0.37 0.01
Lactobacillus crispatus NR_041800.1 1518 3 238 15.68 0.31 32.5 0.0 47770 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.31 0.81 2.64 0.01
Lactobacillus gasseri NR_041920.1 1572 5 1265 80.47 1.06 37.9 0.0 324831 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 1.06 0.73 0.69 0.02
Enterococcus faecium NR_042054.1 1551 278 1520 98.0 68.82 20.9 2.12 1352 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 68.82 71.48 1.04 1.11
Lactobacillus gallinarum NR_042111.1 1546 3 370 23.93 0.42 37.1 0.0 52242 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.42 0.84 2.01 0.01
Lactobacillus helveticus NR_042439.1 1554 3 1523 98.01 1.18 41.5 1.33 585520 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 1.18 0.55 0.46 0.01
Latilactobacillus sakei NR_042443.1 1561 1 681 43.63 0.44 43.1 9.0 214326 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Latilactobacillus 0.44 0.5 1.14 0.0
Streptococcus salivarius NR_042776.1 1546 11 1498 96.9 2.72 36.9 0.18 1304 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus 2.72 1.75 0.65 0.04
Streptococcus vestibularis NR_042777.1 1538 4 282 18.34 0.37 22.6 0.75 889206 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus 0.37 0.87 2.35 0.02
Streptococcus thermophilus NR_042778.1 1539 33 1510 98.12 12.13 32.1 10.0 1308 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus 12.13 4.52 0.37 0.13
Lactobacillus acidophilus NR_043182.1 1478 24 1336 90.39 5.42 31.4 19.8 1579 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 5.42 6.33 1.17 0.1
Lacticaseibacillus rhamnosus NR_043408.1 1521 4 1511 99.34 2.45 41.9 1.0 47715 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 2.45 0.85 0.35 0.02
Bifidobacterium longum NR_043437.1 1515 8 932 61.52 1.71 30.2 2.0 1682 Bacteria Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium 1.71 1.85 1.08 0.03
Lactobacillus taiwanensis NR_044507.1 1526 3 165 10.81 0.29 40.0 0.0 508451 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.29 0.87 2.97 0.01
Bifidobacterium longum NR_044693.2 1470 1 67 4.56 0.05 39.7 0.0 1695 Bacteria Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium 0.05 0.21 4.58 0.0
Cupriavidus metallidurans NR_074704.1 1527 20 1489 97.51 5.34 34.2 14.6 266264 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus 5.34 5.66 1.06 0.08
Lactobacillus delbrueckii NR_075019.1 1561 1 234 14.99 0.15 39.9 1.0 390333 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.15 0.36 2.38 0.0
Enterococcus hirae NR_075022.1 1563 4389 1524 97.5 667.5 32.9 2.42 768486 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 667.5 1240.85 1.86 17.49
Limosilactobacillus reuteri NR_075036.1 1569 2 652 41.56 0.42 37.3 0.5 557436 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 0.42 0.49 1.19 0.01
Lactobacillus gasseri NR_075051.2 1573 10 1011 64.27 2.12 35.2 0.0 324831 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 2.12 2.1 0.99 0.04
Lactiplantibacillus plantarum NR_104573.1 1527 14 1435 93.98 4.05 38.1 0.14 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 4.05 4.33 1.07 0.06
Limosilactobacillus fermentum NR_104927.1 1502 1 765 50.93 0.51 29.3 10.0 1613 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 0.51 0.5 0.98 0.0
Enterococcus faecium NR_112039.1 1523 39 1522 99.93 10.7 15.9 4.64 1352 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 10.7 11.38 1.06 0.16
Enterococcus hirae NR_113256.1 1482 4 742 50.07 0.74 13.3 0.5 1354 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 0.74 0.93 1.26 0.02
Enterococcus durans NR_113257.1 1482 124 1476 99.6 49.59 24.4 0.35 53345 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 49.59 35.16 0.71 0.49
Lacticaseibacillus rhamnosus NR_113332.1 1495 59 1495 100.0 12.75 32.5 25.9 47715 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 12.75 14.84 1.16 0.24
Lacticaseibacillus paracasei NR_113337.1 1495 6 924 61.81 1.07 29.7 0.33 1597 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 1.07 1.33 1.24 0.02
Lactiplantibacillus plantarum NR_113338.1 1492 6 1412 94.64 1.93 20.9 0.0 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 1.93 0.94 0.49 0.02
Lactobacillus delbrueckii NR_113387.1 1556 1 256 16.45 0.16 38.1 2.0 1050107 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.16 0.37 2.25 0.0
Enterococcus hirae NR_113574.1 1485 8 1484 99.93 3.31 27.5 0.38 1354 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 3.31 1.81 0.55 0.03
Lactobacillus acidophilus NR_113638.1 1489 1 696 46.74 0.47 34.2 1.0 1579 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.47 0.5 1.07 0.0
Limosilactobacillus reuteri NR_113820.1 1501 1 612 40.77 0.41 22.0 13.0 1598 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 0.41 0.49 1.21 0.0
Lacticaseibacillus paracasei NR_113823.1 1497 1 167 11.16 0.11 33.9 0.0 113557 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 0.11 0.31 2.82 0.0
Enterococcus durans NR_113900.1 1485 164 1485 100.0 65.87 24.7 0.27 53345 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 65.87 46.48 0.71 0.65
Enterococcus faecium NR_113903.1 1426 224 1426 100.0 156.03 28.6 9.08 1352 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 156.03 49.62 0.32 0.89
Enterococcus faecium NR_113904.1 1485 304 1485 100.0 189.63 29.3 0.64 1352 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 189.63 70.26 0.37 1.21
Lactococcus lactis NR_113958.1 1472 1 339 23.03 0.23 39.7 0.0 203404 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 0.23 0.42 1.83 0.0
Cupriavidus metallidurans NR_114128.1 1457 4 1457 100.0 3.04 39.0 5.75 119219 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus 3.04 0.92 0.3 0.02
Enterococcus hirae NR_114452.1 1507 20 1500 99.54 7.7 18.5 0.3 1354 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 7.7 1.94 0.25 0.08
Lactobacillus gallinarum NR_114722.1 1533 2 129 8.41 0.14 33.2 0.0 52242 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.14 0.48 3.44 0.01
Enterococcus faecium NR_114742.1 1533 8197 1512 98.63 4098.96 35.6 8.54 1352 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 4098.96 1795.07 0.44 32.66
Enterococcus hirae NR_114743.1 1535 67 1512 98.5 13.86 21.0 0.58 1354 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 13.86 14.42 1.04 0.27
Enterococcus hirae NR_114783.2 1550 17 828 53.42 3.24 19.0 1.53 1354 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 3.24 4.86 1.5 0.07
Lacticaseibacillus casei NR_115322.1 1528 2 626 40.97 0.41 16.0 0.5 1582 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 0.41 0.49 1.2 0.01
Lacticaseibacillus casei NR_115534.1 1522 28 606 39.82 4.32 30.6 0.04 1423732 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 4.32 8.1 1.88 0.11
Lactiplantibacillus plantarum NR_115605.1 1519 24 1509 99.34 7.7 32.2 0.17 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 7.7 4.01 0.52 0.1
Enterococcus faecium NR_115764.1 1482 250 1482 100.0 156.96 27.9 1.26 1352 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 156.95 50.78 0.32 1.0
Lactococcus cremoris NR_116443.1 1541 1 224 14.54 0.15 31.2 0.0 542833 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 0.15 0.35 2.42 0.0
Lactobacillus acidophilus NR_117062.1 1531 37 1507 98.43 12.23 33.9 7.43 1579 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 12.23 11.61 0.95 0.15
Lactobacillus crispatus NR_117063.1 1516 2 224 14.78 0.24 20.7 1.0 47770 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.24 0.6 2.53 0.01
Bifidobacterium longum NR_117506.1 1477 5 1456 98.58 2.61 28.9 3.6 216816 Bacteria Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium 2.61 1.13 0.43 0.02
Enterococcus lactis NR_117562.1 1437 183 1435 99.86 121.4 28.9 7.8 357441 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 121.4 15.18 0.13 0.73
Lactobacillus gasseri NR_117573.1 1529 1 201 13.15 0.13 37.8 0.0 1596 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.13 0.34 2.57 0.0
Lactobacillus acidophilus NR_117812.1 1453 1 966 66.48 0.66 8.53 1.0 1579 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.66 0.47 0.71 0.0
Lactiplantibacillus plantarum NR_117813.1 1466 1 1391 94.88 0.95 38.2 1.0 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 0.95 0.22 0.23 0.0
Lacticaseibacillus paracasei NR_117987.1 1441 2 913 63.36 0.92 10.8 5.0 1597 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 0.92 0.8 0.87 0.01
Streptococcus thermophilus NR_118998.1 1540 19 444 28.83 4.0 34.8 0.84 1308 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus 4.0 6.81 1.7 0.08
Limosilactobacillus reuteri NR_119069.1 1571 5 654 41.63 0.66 34.9 0.2 557436 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 0.66 0.92 1.38 0.02
Lactobacillus crispatus NR_119274.1 1557 2 223 14.32 0.27 36.7 0.0 47770 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.27 0.67 2.48 0.01
Lactiplantibacillus plajomi NR_136785.1 1492 6 514 34.45 0.62 24.0 0.17 1457217 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 0.62 1.17 1.89 0.02
Bifidobacterium longum NR_145535.1 1494 14 1471 98.46 8.6 31.5 6.43 1931217 Bacteria Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium 8.6 2.09 0.24 0.06
Cupriavidus agavae NR_174193.1 1524 13 1494 98.03 6.85 32.5 23.1 1001822 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus 6.85 2.53 0.37 0.05
Lacticaseibacillus chiayiensis NR_179712.1 1536 12 1518 98.83 2.81 36.1 1.33 2100821 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 2.81 2.18 0.78 0.05
Limosilactobacillus balticus NR_181344.1 1569 5 944 60.17 1.32 36.1 4.0 2759747 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 1.32 1.25 0.95 0.02
Limosilactobacillus agrestis NR_181345.1 1569 4 897 57.17 1.02 34.2 0.0 2759748 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 1.02 0.94 0.92 0.02

Only taxa present in the abundance table above the abundance_threshold parameter appear in the table.

species reference ref length number of reads covbases % coverage mean depth mean baseq mean MAPQ taxid superkingdom kingdom phylum class order family genus mean sd depth CV % reads
Aquabacterium citratiphilum NR_024871.1 1418 2 1413 99.65 1.27 35.6 58.0 70582 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales unclassified Burkholderiales family Aquabacterium 1.27 0.45 0.36 0.01
Lactiplantibacillus paraplantarum NR_025447.1 1502 2 844 56.19 0.56 23.1 1.0 60520 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 0.56 0.5 0.88 0.01
Lacticaseibacillus paracasei NR_025880.1 1522 9317 1519 99.8 3433.41 34.9 3.54 1597 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 3433.41 1123.36 0.33 38.72
Cupriavidus metallidurans NR_027607.1 1493 1 333 22.3 0.22 31.1 0.0 266264 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus 0.22 0.42 1.87 0.0
Ligilactobacillus salivarius NR_028725.2 1542 7 546 35.41 0.9 34.2 31.0 1624 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus 0.9 1.5 1.67 0.03
Lactiplantibacillus pentosus NR_029133.1 1519 28 1516 99.8 7.77 38.5 0.14 1589 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 7.77 4.33 0.56 0.12
Enterococcus durans NR_036922.1 1534 7 1508 98.31 2.04 35.3 10.3 53345 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 2.04 1.09 0.54 0.03
Lacticaseibacillus zeae NR_037122.1 1522 1375 1520 99.87 228.61 32.0 0.1 57037 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 228.61 402.15 1.76 5.71
Lactococcus cremoris NR_040954.1 1499 3 1413 94.26 1.5 37.3 0.33 1359 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 1.5 0.94 0.62 0.01
Lactococcus lactis NR_040955.1 1499 3 1458 97.26 1.42 39.5 0.0 1358 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 1.42 0.79 0.56 0.01
Lactococcus lactis NR_040956.1 1499 4 1474 98.33 1.51 39.3 0.0 203404 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 1.51 0.58 0.38 0.02
Lacticaseibacillus paracasei NR_041054.1 1497 129 1497 100.0 33.94 21.7 0.4 113557 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 33.94 33.44 0.99 0.54
Lactobacillus crispatus NR_041800.1 1518 2 420 27.67 0.42 32.5 0.0 47770 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.42 0.73 1.73 0.01
Lacticaseibacillus casei NR_041893.1 1517 56 1517 100.0 18.98 17.1 0.43 1423732 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 18.98 9.31 0.49 0.23
Lactobacillus gasseri NR_041920.1 1572 4 1525 97.01 1.52 35.7 0.0 324831 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 1.52 0.83 0.55 0.02
Lactobacillus gallinarum NR_042111.1 1546 3 1493 96.57 1.07 33.9 4.33 52242 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 1.07 0.47 0.44 0.01
Lactobacillus helveticus NR_042439.1 1554 2 544 35.01 0.35 11.6 0.0 585520 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.35 0.48 1.36 0.01
Latilactobacillus sakei NR_042443.1 1561 2 586 37.54 0.38 18.9 1.0 214326 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Latilactobacillus 0.38 0.48 1.29 0.01
Streptococcus salivarius NR_042776.1 1546 2 205 13.26 0.18 26.5 0.0 1304 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus 0.18 0.51 2.73 0.01
Streptococcus vestibularis NR_042777.1 1538 1 90 5.85 0.06 37.7 0.0 889206 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus 0.06 0.23 4.01 0.0
Streptococcus thermophilus NR_042778.1 1539 38 1512 98.25 16.13 35.3 10.5 1308 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus 16.13 4.78 0.3 0.16
Lactobacillus acidophilus NR_043182.1 1478 35 1472 99.59 9.0 35.5 18.4 1579 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 9.0 9.72 1.08 0.15
Lacticaseibacillus rhamnosus NR_043408.1 1521 229 1511 99.34 61.48 27.7 1.12 47715 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 61.48 46.42 0.75 0.95
Bifidobacterium longum NR_043437.1 1515 1 214 14.13 0.14 41.5 0.0 1682 Bacteria Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium 0.14 0.35 2.47 0.0
Cupriavidus metallidurans NR_074704.1 1527 5 531 34.77 1.09 33.6 18.4 266264 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus 1.09 1.85 1.7 0.02
Lactobacillus delbrueckii NR_075019.1 1561 3 463 29.66 0.45 38.2 1.0 390333 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.45 0.82 1.83 0.01
Enterococcus hirae NR_075022.1 1563 2 415 26.55 0.33 41.6 1.0 768486 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 0.33 0.59 1.79 0.01
Limosilactobacillus reuteri NR_075036.1 1569 11 1536 97.9 3.71 37.5 2.09 557436 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 3.71 2.74 0.74 0.05
Lactobacillus gasseri NR_075051.2 1573 6 1102 70.06 1.29 29.5 0.0 324831 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 1.29 1.23 0.96 0.02
Lactiplantibacillus plantarum NR_104573.1 1527 9 447 29.27 1.71 36.3 0.11 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 1.71 2.98 1.75 0.04
Limosilactobacillus fermentum NR_104927.1 1502 1 81 5.39 0.05 15.5 1.0 1613 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 0.05 0.23 4.19 0.0
Lactiplantibacillus plantarum NR_112690.1 1454 1 673 46.29 0.46 40.3 1.0 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 0.46 0.5 1.08 0.0
Lacticaseibacillus rhamnosus NR_113332.1 1495 5203 1495 100.0 1760.61 34.4 33.0 47715 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 1760.61 1067.73 0.61 21.62
Lacticaseibacillus casei NR_113333.1 1495 18 1426 95.38 5.94 15.9 0.56 1582 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 5.94 3.82 0.64 0.07
Lacticaseibacillus paracasei NR_113337.1 1495 3134 1495 100.0 672.59 33.7 0.46 1597 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 672.59 745.67 1.11 13.02
Lactiplantibacillus plantarum NR_113338.1 1492 8 1184 79.36 2.47 39.4 0.0 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 2.47 2.24 0.91 0.03
Limosilactobacillus reuteri NR_113820.1 1501 4 1389 92.54 2.28 30.2 0.5 1598 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 2.28 0.93 0.41 0.02
Latilactobacillus sakei NR_113821.1 1499 1 623 41.56 0.42 10.0 1.0 1599 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Latilactobacillus 0.42 0.49 1.19 0.0
Lacticaseibacillus paracasei NR_113823.1 1497 125 1496 99.93 34.08 23.7 0.12 113557 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 34.08 28.92 0.85 0.52
Enterococcus faecium NR_113904.1 1485 1 922 62.09 0.62 36.1 1.0 1352 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 0.62 0.49 0.78 0.0
Enterococcus faecium NR_114742.1 1533 11 1491 97.26 3.43 29.0 3.91 1352 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 3.43 3.28 0.96 0.05
Enterococcus hirae NR_114743.1 1535 2 1321 86.06 0.93 12.2 0.0 1354 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 0.93 0.45 0.49 0.01
Lacticaseibacillus casei NR_115322.1 1528 135 1528 100.0 26.77 19.1 3.29 1582 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 26.77 28.18 1.05 0.56
Lacticaseibacillus casei NR_115534.1 1522 1458 1497 98.36 220.87 32.6 0.05 1423732 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 220.87 442.15 2.0 6.06
Lactiplantibacillus plantarum NR_115605.1 1519 22 1509 99.34 9.77 36.8 0.59 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 9.77 3.22 0.33 0.09
Enterococcus faecium NR_115764.1 1482 1 157 10.59 0.11 42.1 0.0 1352 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 0.11 0.31 2.91 0.0
Lactococcus cremoris NR_116443.1 1541 1 223 14.47 0.14 33.3 1.0 542833 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 0.14 0.35 2.43 0.0
Lactobacillus gallinarum NR_117061.1 1518 3 558 36.76 0.88 30.6 0.0 52242 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.88 1.25 1.43 0.01
Lactobacillus acidophilus NR_117062.1 1531 33 1514 98.89 13.18 30.2 9.48 1579 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 13.18 10.18 0.77 0.14
Lactobacillus crispatus NR_117063.1 1516 4 197 12.99 0.43 37.4 0.0 47770 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.43 1.19 2.75 0.02
Lactobacillus gasseri NR_117573.1 1529 4 431 28.19 0.72 31.2 0.0 1596 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.72 1.31 1.82 0.02
Lactobacillus acidophilus NR_117812.1 1453 2 1379 94.91 1.24 31.3 0.5 1579 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 1.24 0.53 0.43 0.01
Lacticaseibacillus paracasei NR_117987.1 1441 249 1441 100.0 162.53 26.4 11.9 1597 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 162.53 19.67 0.12 1.03
Streptococcus thermophilus NR_118998.1 1540 19 646 41.95 3.25 33.9 2.21 1308 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus 3.25 5.79 1.78 0.08
Limosilactobacillus reuteri NR_119069.1 1571 8 985 62.7 1.58 36.7 0.62 557436 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 1.58 1.64 1.04 0.03
Lactobacillus crispatus NR_119274.1 1557 2 136 8.73 0.17 29.2 0.5 47770 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.17 0.54 3.28 0.01
Lactiplantibacillus plajomi NR_136785.1 1492 5 439 29.42 0.51 23.2 1.8 1457217 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 0.51 1.03 2.02 0.02
Cupriavidus agavae NR_174193.1 1524 4 1490 97.77 2.51 39.1 43.0 1001822 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus 2.51 0.63 0.25 0.02
Lacticaseibacillus chiayiensis NR_179712.1 1536 1288 1526 99.35 205.64 31.6 0.22 2100821 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 205.64 367.07 1.79 5.35
Limosilactobacillus balticus NR_181344.1 1569 11 1538 98.02 3.62 27.6 0.46 2759747 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 3.62 1.3 0.36 0.05
Limosilactobacillus agrestis NR_181345.1 1569 3 1510 96.24 1.52 24.1 0.33 2759748 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 1.52 0.57 0.37 0.01

Only taxa present in the abundance table above the abundance_threshold parameter appear in the table.

species reference ref length number of reads covbases % coverage mean depth mean baseq mean MAPQ taxid superkingdom kingdom phylum class order family genus mean sd depth CV % reads
Aquabacterium citratiphilum NR_024871.1 1418 4 1418 100.0 2.05 28.8 43.0 70582 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales unclassified Burkholderiales family Aquabacterium 2.05 0.71 0.35 0.01
Lactiplantibacillus paraplantarum NR_025447.1 1502 45 1502 100.0 22.11 33.5 1.6 60520 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 22.11 3.41 0.15 0.12
Lacticaseibacillus paracasei NR_025880.1 1522 498 1519 99.8 124.52 33.4 2.01 1597 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 124.52 151.8 1.22 1.31
Ligilactobacillus salivarius NR_028725.2 1542 7 1523 98.77 1.57 39.2 11.3 1624 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus 1.57 0.89 0.57 0.02
Lactobacillus delbrueckii NR_029106.1 1515 1 1087 71.75 0.72 8.37 0.0 249265 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.72 0.45 0.63 0.0
Lactiplantibacillus pentosus NR_029133.1 1519 759 1509 99.34 216.07 34.3 0.51 1589 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 216.07 103.96 0.48 2.0
Afipia broomeae NR_029200.1 1401 2 781 55.75 0.85 38.7 28.0 56946 Bacteria Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Afipia 0.85 0.84 0.99 0.01
Enterococcus durans NR_036922.1 1534 11 1507 98.24 2.47 36.6 1.55 53345 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 2.47 1.59 0.64 0.03
Enterococcus hirae NR_037082.1 1535 4 200 13.03 0.44 28.4 0.25 1354 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 0.44 1.21 2.73 0.01
Lacticaseibacillus zeae NR_037122.1 1522 331 1512 99.34 67.73 32.5 0.27 57037 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 67.73 93.69 1.38 0.87
Lactococcus cremoris NR_040954.1 1499 481 1489 99.33 139.05 34.4 0.2 1359 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 139.05 143.32 1.03 1.27
Lactococcus lactis NR_040955.1 1499 1029 1490 99.4 375.27 33.0 0.14 1358 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 375.27 137.65 0.37 2.71
Lactococcus lactis NR_040956.1 1499 1053 1491 99.47 380.0 33.2 0.12 203404 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 380.0 138.72 0.37 2.78
Lacticaseibacillus paracasei NR_041054.1 1497 2 1171 78.22 1.29 29.2 0.0 113557 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 1.29 0.8 0.62 0.01
Lentilactobacillus buchneri NR_041293.1 1542 5 1296 84.05 1.97 33.2 29.0 1581 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus 1.97 1.07 0.54 0.01
Lentilactobacillus kisonensis NR_041658.1 1565 1 49 3.13 0.03 34.0 0.0 481722 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus 0.03 0.17 5.56 0.0
Lactobacillus crispatus NR_041800.1 1518 328 1505 99.14 40.51 31.9 0.14 47770 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 40.51 94.8 2.34 0.87
Lacticaseibacillus casei NR_041893.1 1517 252 1517 100.0 164.04 34.3 13.8 1423732 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 164.03 38.45 0.23 0.66
Lactobacillus gasseri NR_041920.1 1572 7 1530 97.33 2.17 27.6 0.86 324831 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 2.17 1.08 0.5 0.02
Enterococcus faecium NR_042054.1 1551 3 378 24.37 0.43 16.9 7.0 1352 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 0.43 0.88 2.02 0.01
Lactobacillus gallinarum NR_042111.1 1546 47 1492 96.51 8.15 21.0 0.38 52242 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 8.15 12.5 1.53 0.12
Lactiplantibacillus plantarum NR_042394.1 1474 49 1474 100.0 27.47 31.7 4.27 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 27.47 3.39 0.12 0.13
Lactobacillus helveticus NR_042439.1 1554 21 1141 73.42 2.75 24.8 3.43 585520 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 2.75 3.3 1.2 0.06
Streptococcus salivarius NR_042776.1 1546 505 1511 97.74 102.97 26.5 0.24 1304 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus 102.97 119.99 1.17 1.33
Streptococcus vestibularis NR_042777.1 1538 145 1511 98.24 36.31 25.5 0.77 889206 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus 36.31 21.01 0.58 0.38
Streptococcus thermophilus NR_042778.1 1539 6973 1518 98.64 2664.55 33.8 15.6 1308 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus 2664.55 999.65 0.38 18.39
Lactobacillus acidophilus NR_043182.1 1478 6421 1478 100.0 1733.34 33.2 22.3 1579 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 1733.34 1657.92 0.96 16.93
Lacticaseibacillus rhamnosus NR_043408.1 1521 51 1512 99.41 13.41 28.3 1.0 47715 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 13.41 10.29 0.77 0.13
Bifidobacterium longum NR_043437.1 1515 1 366 24.16 0.24 27.5 0.0 1682 Bacteria Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium 0.24 0.43 1.77 0.0
Lactobacillus taiwanensis NR_044507.1 1526 1 273 17.89 0.18 11.2 0.0 508451 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.18 0.38 2.14 0.0
Cupriavidus metallidurans NR_074704.1 1527 5 683 44.73 0.95 31.7 11.2 266264 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus 0.95 1.36 1.42 0.01
Lactobacillus delbrueckii NR_075019.1 1561 10 1048 67.14 1.83 34.5 5.4 390333 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 1.83 1.64 0.89 0.03
Enterococcus hirae NR_075022.1 1563 10 796 50.93 1.35 29.5 0.3 768486 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 1.35 1.85 1.38 0.03
Limosilactobacillus reuteri NR_075036.1 1569 8 961 61.25 1.84 37.1 3.0 557436 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 1.84 1.86 1.01 0.02
Lactobacillus gasseri NR_075051.2 1573 2 294 18.69 0.19 36.2 0.5 324831 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.19 0.39 2.09 0.01
Lactiplantibacillus plantarum NR_104573.1 1527 277 1506 98.62 74.97 34.0 0.22 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 74.97 74.38 0.99 0.73
Limosilactobacillus fermentum NR_104927.1 1502 3 840 55.93 0.75 10.6 2.33 1613 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 0.75 0.76 1.01 0.01
Lactiplantibacillus plantarum NR_112690.1 1454 17 1425 98.01 10.85 35.1 7.59 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 10.85 3.83 0.35 0.04
Ligilactobacillus salivarius NR_112759.1 1486 1 266 17.9 0.18 24.1 5.0 1624 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus 0.18 0.38 2.14 0.0
Enterococcus durans NR_113257.1 1482 1 1411 95.21 0.95 26.9 0.0 53345 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 0.95 0.21 0.22 0.0
Lactobacillus gallinarum NR_113261.1 1486 4 759 51.08 0.78 14.3 0.25 52242 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.78 0.94 1.21 0.01
Lacticaseibacillus rhamnosus NR_113332.1 1495 1076 1495 100.0 334.78 34.1 31.8 47715 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 334.77 252.71 0.75 2.84
Lacticaseibacillus casei NR_113333.1 1495 34 1495 100.0 21.12 25.0 2.15 1582 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 21.12 4.82 0.23 0.09
Limosilactobacillus fermentum NR_113335.1 1501 1 422 28.11 0.28 22.7 0.0 1613 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 0.28 0.45 1.6 0.0
Lacticaseibacillus paracasei NR_113337.1 1495 21 1495 100.0 6.81 27.4 0.43 1597 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 6.81 3.14 0.46 0.06
Lactiplantibacillus plantarum NR_113338.1 1492 291 1492 100.0 67.64 33.9 0.08 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 67.64 66.52 0.98 0.77
Lactobacillus delbrueckii NR_113387.1 1556 34 908 58.35 2.04 24.5 2.5 1050107 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 2.04 5.98 2.94 0.09
Lactobacillus acidophilus NR_113638.1 1489 370 1489 100.0 181.92 28.4 1.21 1579 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 181.92 48.15 0.26 0.98
Lactobacillus delbrueckii NR_113639.1 1489 1 1485 99.73 1.0 41.5 4.0 1585 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 1.0 0.05 0.05 0.0
Lactobacillus helveticus NR_113719.1 1487 2 1110 74.65 0.89 8.11 1.0 1587 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.89 0.62 0.7 0.01
Limosilactobacillus reuteri NR_113820.1 1501 3 1340 89.27 0.95 32.8 2.67 1598 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 0.95 0.4 0.42 0.01
Lacticaseibacillus paracasei NR_113823.1 1497 2 848 56.65 0.58 15.8 0.0 113557 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 0.58 0.52 0.9 0.01
Enterococcus durans NR_113900.1 1485 1 152 10.24 0.1 26.5 1.0 53345 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 0.1 0.3 2.96 0.0
Enterococcus faecium NR_113904.1 1485 1 155 10.44 0.1 23.8 1.0 1352 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 0.1 0.31 2.93 0.0
Lactococcus cremoris NR_113925.1 1466 59 1466 100.0 41.39 35.9 10.4 1359 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 41.39 10.46 0.25 0.16
Lactococcus lactis NR_113958.1 1472 498 1472 100.0 185.42 31.4 0.03 203404 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 185.42 133.98 0.72 1.31
Lactococcus lactis NR_113960.1 1472 475 1472 100.0 176.96 32.7 0.17 1358 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 176.96 130.03 0.73 1.25
Enterococcus hirae NR_114452.1 1507 2 200 13.27 0.26 36.6 0.5 1354 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 0.26 0.67 2.57 0.01
Lactobacillus gallinarum NR_114722.1 1533 31 1272 82.97 4.01 24.2 0.58 52242 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 4.01 7.5 1.87 0.08
Enterococcus faecium NR_114742.1 1533 13 1510 98.5 4.39 36.9 2.85 1352 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 4.39 2.49 0.57 0.03
Enterococcus hirae NR_114743.1 1535 3 184 11.99 0.31 25.2 0.67 1354 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 0.31 0.86 2.79 0.01
Enterococcus hirae NR_114783.2 1550 1 165 10.65 0.11 25.7 0.0 1354 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 0.11 0.31 2.9 0.0
Lacticaseibacillus casei NR_115322.1 1528 1003 1528 100.0 171.46 32.1 15.4 1582 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 171.45 283.25 1.65 2.65
Lacticaseibacillus casei NR_115534.1 1522 568 1517 99.67 151.96 33.8 0.47 1423732 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 151.96 181.92 1.2 1.5
Lactiplantibacillus plantarum NR_115605.1 1519 529 1516 99.8 167.45 33.3 0.84 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 167.45 78.19 0.47 1.4
Enterococcus faecium NR_115764.1 1482 1 112 7.56 0.08 26.7 0.0 1352 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 0.08 0.26 3.5 0.0
Lactococcus cremoris NR_116443.1 1541 595 1509 97.92 174.45 32.4 1.77 542833 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 174.45 116.66 0.67 1.57
Lactobacillus helveticus NR_117060.1 1516 13 589 38.85 1.29 20.6 0.23 585520 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 1.29 2.79 2.16 0.03
Lactobacillus gallinarum NR_117061.1 1518 37 1370 90.25 5.36 24.5 0.27 52242 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 5.36 9.06 1.69 0.1
Lactobacillus acidophilus NR_117062.1 1531 4754 1512 98.76 1796.06 33.6 9.37 1579 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 1796.06 1377.0 0.77 12.54
Lactobacillus crispatus NR_117063.1 1516 323 1481 97.69 39.86 32.1 0.23 47770 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 39.86 94.19 2.36 0.85
Lactobacillus gasseri NR_117573.1 1529 3 974 63.7 1.21 37.6 0.0 1596 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 1.21 1.14 0.94 0.01
Lactobacillus acidophilus NR_117812.1 1453 330 1453 100.0 219.08 31.4 11.3 1579 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 219.08 30.57 0.14 0.87
Lactiplantibacillus plantarum NR_117813.1 1466 30 1457 99.39 16.17 31.3 9.9 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 16.17 2.76 0.17 0.08
Lacticaseibacillus paracasei NR_117987.1 1441 36 1433 99.44 19.18 31.5 18.8 1597 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 19.18 9.85 0.51 0.09
Streptococcus thermophilus NR_118998.1 1540 1777 1510 98.05 308.99 34.6 0.3 1308 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus 308.99 571.04 1.85 4.69
Limosilactobacillus reuteri NR_119069.1 1571 8 1286 81.86 1.71 24.8 0.88 557436 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 1.71 1.89 1.1 0.02
Lactobacillus crispatus NR_119274.1 1557 309 1528 98.14 40.4 30.9 0.29 47770 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 40.4 85.01 2.1 0.81
Lactobacillus psittaci NR_125811.1 1421 1 1048 73.75 0.74 10.5 1.0 116089 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.74 0.44 0.6 0.0
Lactiplantibacillus plajomi NR_136785.1 1492 243 1492 100.0 37.48 30.7 1.9 1457217 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 37.48 57.46 1.53 0.64
Bifidobacterium longum NR_145535.1 1494 2 969 64.86 0.82 33.4 7.0 1931217 Bacteria Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium 0.82 0.7 0.85 0.01
Cupriavidus agavae NR_174193.1 1524 3 877 57.55 1.38 31.7 16.0 1001822 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus 1.38 1.25 0.91 0.01
Lactiplantibacillus daoliensis NR_179285.1 1441 4 1375 95.42 1.7 34.6 6.75 2559916 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 1.7 0.72 0.42 0.01
Lactobacillus paragasseri NR_179379.1 1511 3 1509 99.87 1.32 37.5 3.67 2107999 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 1.32 0.49 0.37 0.01
Lacticaseibacillus chiayiensis NR_179712.1 1536 401 1524 99.22 117.21 33.8 6.51 2100821 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 117.21 63.09 0.54 1.06
Limosilactobacillus balticus NR_181344.1 1569 5 1334 85.02 1.01 37.6 0.2 2759747 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 1.01 0.63 0.62 0.01
Limosilactobacillus agrestis NR_181345.1 1569 9 900 57.36 1.16 26.8 0.22 2759748 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 1.16 1.74 1.51 0.02

Only taxa present in the abundance table above the abundance_threshold parameter appear in the table.

species reference ref length number of reads covbases % coverage mean depth mean baseq mean MAPQ taxid superkingdom kingdom phylum class order family genus mean sd depth CV % reads
Aquabacterium citratiphilum NR_024871.1 1418 3 1418 100.0 2.24 36.2 37.7 70582 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales unclassified Burkholderiales family Aquabacterium 2.24 0.47 0.21 0.01
Lactiplantibacillus paraplantarum NR_025447.1 1502 49 1502 100.0 23.05 30.8 1.57 60520 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 23.05 9.06 0.39 0.12
Lacticaseibacillus paracasei NR_025880.1 1522 6545 1520 99.87 2070.91 34.2 3.1 1597 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 2070.91 1158.88 0.56 15.77
Ligilactobacillus salivarius NR_028725.2 1542 3068 1532 99.35 692.49 32.4 17.2 1624 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus 692.49 495.64 0.72 7.39
Lactobacillus delbrueckii NR_029106.1 1515 38 1502 99.14 10.63 20.7 1.95 249265 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 10.63 9.57 0.9 0.09
Lactiplantibacillus pentosus NR_029133.1 1519 1095 1516 99.8 356.19 34.4 0.73 1589 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 356.19 160.77 0.45 2.64
Enterococcus durans NR_036922.1 1534 13 1500 97.78 2.73 32.0 5.38 53345 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 2.73 1.8 0.66 0.03
Enterococcus hirae NR_037082.1 1535 1 162 10.55 0.11 30.3 0.0 1354 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 0.11 0.31 2.91 0.0
Lacticaseibacillus zeae NR_037122.1 1522 1691 1521 99.93 305.04 31.7 0.1 57037 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 305.04 508.31 1.67 4.08
Lactococcus cremoris NR_040954.1 1499 231 1489 99.33 68.06 33.3 0.64 1359 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 68.06 67.52 0.99 0.56
Lactococcus lactis NR_040955.1 1499 450 1491 99.47 163.87 32.5 0.12 1358 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 163.87 59.63 0.36 1.08
Lactococcus lactis NR_040956.1 1499 495 1491 99.47 185.7 32.9 0.07 203404 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 185.7 64.54 0.35 1.19
Lacticaseibacillus paracasei NR_041054.1 1497 81 1495 99.87 19.14 21.0 0.4 113557 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 19.14 20.3 1.06 0.2
Lentilactobacillus buchneri NR_041293.1 1542 1 107 6.94 0.07 44.4 30.0 1581 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus 0.07 0.25 3.66 0.0
Lentilactobacillus sunkii NR_041656.1 1567 2 88 5.62 0.09 43.8 0.5 481719 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus 0.09 0.38 4.32 0.0
Lentilactobacillus kisonensis NR_041658.1 1565 4 506 32.33 0.42 22.4 1.0 481722 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus 0.42 0.66 1.57 0.01
Lentilactobacillus rapi NR_041659.1 1566 1 49 3.13 0.03 46.6 0.0 481723 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus 0.03 0.17 5.56 0.0
Lactobacillus crispatus NR_041800.1 1518 27 1476 97.23 6.7 31.2 1.81 47770 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 6.7 8.66 1.29 0.07
Lacticaseibacillus casei NR_041893.1 1517 135 1517 100.0 53.99 20.7 0.83 1423732 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 53.99 23.23 0.43 0.33
Lactobacillus gasseri NR_041920.1 1572 6 1297 82.51 1.47 18.5 0.0 324831 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 1.47 1.19 0.81 0.01
Enterococcus faecium NR_042054.1 1551 2 963 62.09 0.96 9.72 1.0 1352 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 0.96 0.85 0.88 0.0
Lactobacillus gallinarum NR_042111.1 1546 430 1518 98.19 225.07 33.6 3.91 52242 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 225.07 47.25 0.21 1.04
Lactiplantibacillus plantarum NR_042394.1 1474 41 1474 100.0 26.43 29.4 4.98 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 26.43 2.72 0.1 0.1
Lactobacillus helveticus NR_042439.1 1554 1022 1532 98.58 247.56 31.0 3.26 585520 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 247.56 207.39 0.84 2.46
Latilactobacillus sakei NR_042443.1 1561 1 953 61.05 0.61 15.9 1.0 214326 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Latilactobacillus 0.61 0.49 0.8 0.0
Lactobacillus delbrueckii NR_042728.1 1505 11 1497 99.47 3.97 15.7 0.91 888027 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 3.97 1.69 0.43 0.03
Streptococcus salivarius NR_042776.1 1546 159 1511 97.74 33.49 26.7 0.2 1304 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus 33.49 38.65 1.15 0.38
Streptococcus vestibularis NR_042777.1 1538 46 1509 98.11 10.69 24.9 0.48 889206 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus 10.69 6.13 0.57 0.11
Streptococcus thermophilus NR_042778.1 1539 2442 1516 98.51 935.83 33.5 15.6 1308 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus 935.83 335.28 0.36 5.89
Lactobacillus acidophilus NR_043182.1 1478 38 1477 99.93 10.27 30.0 17.5 1579 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 10.27 9.32 0.91 0.09
Lactobacillus delbrueckii NR_043183.1 1518 23 1518 100.0 6.15 17.9 1.09 1584 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 6.15 3.8 0.62 0.06
Lacticaseibacillus rhamnosus NR_043408.1 1521 276 1511 99.34 71.8 23.6 0.97 47715 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 71.8 42.75 0.6 0.67
Lactobacillus taiwanensis NR_044507.1 1526 5 1443 94.56 1.88 25.2 0.4 508451 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 1.88 0.92 0.49 0.01
Cupriavidus metallidurans NR_074704.1 1527 20 1151 75.38 3.95 29.6 16.7 266264 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus 3.95 5.26 1.33 0.05
Lactobacillus delbrueckii NR_075019.1 1561 1645 1534 98.27 418.36 32.5 9.43 390333 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 418.36 283.49 0.68 3.96
Enterococcus hirae NR_075022.1 1563 10 819 52.4 1.14 34.4 0.9 768486 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 1.14 1.98 1.74 0.02
Limosilactobacillus reuteri NR_075036.1 1569 14 1540 98.15 5.71 30.8 8.14 557436 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 5.71 2.33 0.41 0.03
Lactobacillus gasseri NR_075051.2 1573 4 1033 65.67 0.81 16.9 0.0 324831 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.81 0.68 0.84 0.01
Lactiplantibacillus plantarum NR_104573.1 1527 375 1502 98.36 105.02 32.8 0.2 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 105.02 98.87 0.94 0.9
Limosilactobacillus fermentum NR_104927.1 1502 27 1502 100.0 10.48 34.6 12.8 1613 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 10.48 5.48 0.52 0.07
Enterococcus faecium NR_112039.1 1523 1 220 14.45 0.14 13.1 6.0 1352 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 0.14 0.35 2.43 0.0
Lactiplantibacillus plantarum NR_112690.1 1454 32 1454 100.0 19.21 29.0 8.31 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 19.21 3.55 0.18 0.08
Ligilactobacillus salivarius NR_112759.1 1486 633 1486 100.0 377.48 34.1 22.6 1624 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus 377.49 49.52 0.13 1.53
Lactobacillus gallinarum NR_113261.1 1486 56 1486 100.0 36.54 27.9 3.29 52242 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 36.54 7.77 0.21 0.13
Lacticaseibacillus rhamnosus NR_113332.1 1495 8827 1495 100.0 3010.36 33.7 32.1 47715 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 3010.36 1864.07 0.62 21.27
Lacticaseibacillus casei NR_113333.1 1495 28 1411 94.38 9.16 14.5 4.21 1582 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 9.16 4.84 0.53 0.07
Limosilactobacillus fermentum NR_113335.1 1501 26 1355 90.27 5.31 33.2 6.58 1613 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 5.31 7.11 1.34 0.06
Lacticaseibacillus paracasei NR_113337.1 1495 805 1495 100.0 147.75 30.4 0.18 1597 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 147.75 146.51 0.99 1.94
Lactiplantibacillus plantarum NR_113338.1 1492 311 1492 100.0 62.86 32.9 0.22 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 62.86 71.98 1.14 0.75
Lactobacillus delbrueckii NR_113387.1 1556 541 1527 98.14 101.14 29.7 9.92 1050107 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 101.13 99.17 0.98 1.3
Lactobacillus acidophilus NR_113638.1 1489 7 1473 98.93 1.94 11.8 0.29 1579 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 1.94 0.66 0.34 0.02
Lactobacillus delbrueckii NR_113639.1 1489 189 1489 100.0 139.79 34.7 2.27 1585 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 139.79 24.68 0.18 0.46
Lactobacillus helveticus NR_113719.1 1487 54 1487 100.0 29.83 29.1 3.89 1587 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 29.83 4.66 0.16 0.13
Lacticaseibacillus paracasei NR_113823.1 1497 93 1496 99.93 23.98 21.2 0.17 113557 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 23.98 23.04 0.96 0.22
Enterococcus faecium NR_113903.1 1426 1 1425 99.93 1.0 39.4 1.0 1352 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 1.0 0.03 0.03 0.0
Enterococcus faecium NR_113904.1 1485 2 1184 79.73 1.11 42.5 1.0 1352 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 1.11 0.71 0.64 0.0
Lactococcus cremoris NR_113925.1 1466 19 1464 99.86 10.84 32.1 11.0 1359 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 10.84 5.41 0.5 0.05
Lactococcus lactis NR_113958.1 1472 267 1472 100.0 101.15 31.5 0.13 203404 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 101.15 67.2 0.66 0.64
Lactococcus lactis NR_113960.1 1472 218 1472 100.0 90.28 33.0 0.05 1358 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 90.28 52.81 0.58 0.53
Lactobacillus delbrueckii NR_114168.1 1489 2 752 50.5 0.76 10.7 0.5 29397 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.76 0.84 1.09 0.0
Enterococcus hirae NR_114452.1 1507 1 119 7.9 0.08 23.9 0.0 1354 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 0.08 0.27 3.42 0.0
Lactobacillus gallinarum NR_114722.1 1533 17 1386 90.41 3.27 17.1 3.82 52242 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 3.27 4.16 1.27 0.04
Enterococcus faecium NR_114742.1 1533 24 1510 98.5 10.58 31.8 4.33 1352 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 10.58 7.26 0.69 0.06
Enterococcus hirae NR_114743.1 1535 2 184 11.99 0.22 19.4 0.0 1354 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 0.22 0.62 2.76 0.0
Lactobacillus delbrueckii NR_115131.1 1513 49 1505 99.47 15.24 18.6 0.39 390333 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 15.24 11.01 0.72 0.12
Lactobacillus delbrueckii NR_115132.1 1507 2 915 60.72 0.61 13.0 0.5 1584 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.61 0.49 0.8 0.0
Lacticaseibacillus casei NR_115322.1 1528 133 1528 100.0 27.02 20.9 4.88 1582 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 27.02 23.07 0.85 0.32
Lacticaseibacillus casei NR_115534.1 1522 1575 1519 99.8 258.64 31.8 0.08 1423732 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 258.64 483.92 1.87 3.8
Lactiplantibacillus plantarum NR_115605.1 1519 517 1516 99.8 157.62 33.6 0.48 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 157.62 80.27 0.51 1.25
Enterococcus faecium NR_115764.1 1482 1 491 33.13 0.33 16.3 1.0 1352 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 0.33 0.47 1.42 0.0
Ligilactobacillus salivarius NR_115884.1 1063 107 1063 100.0 72.89 32.3 9.64 1624 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus 72.89 26.52 0.36 0.26
Lactococcus cremoris NR_116443.1 1541 288 1511 98.05 87.47 32.5 1.19 542833 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 87.47 59.96 0.69 0.69
Lactobacillus helveticus NR_117060.1 1516 318 1498 98.81 100.87 32.5 0.74 585520 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 100.87 86.04 0.85 0.77
Lactobacillus gallinarum NR_117061.1 1518 180 1495 98.48 72.81 32.1 0.35 52242 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 72.81 53.44 0.73 0.43
Lactobacillus acidophilus NR_117062.1 1531 54 1511 98.69 18.76 30.6 7.57 1579 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 18.76 15.92 0.85 0.13
Lactobacillus crispatus NR_117063.1 1516 27 1246 82.19 6.45 27.9 0.11 47770 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 6.45 8.74 1.35 0.07
Lactobacillus delbrueckii NR_117074.1 1514 32 1173 77.48 8.56 28.1 0.75 1584 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 8.56 10.1 1.18 0.08
Lactobacillus delbrueckii NR_117075.1 1475 174 1475 100.0 113.88 34.2 2.39 390333 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 113.88 32.01 0.28 0.42
Lactobacillus delbrueckii NR_117076.1 1445 13 1418 98.13 3.82 17.4 0.54 888027 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 3.82 2.84 0.74 0.03
Bifidobacterium longum NR_117506.1 1477 1 426 28.84 0.29 37.1 0.0 216816 Bacteria Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium 0.29 0.45 1.57 0.0
Lactobacillus gasseri NR_117573.1 1529 1 622 40.68 0.41 10.9 0.0 1596 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.41 0.49 1.21 0.0
Lactobacillus delbrueckii NR_117768.1 1365 5 1339 98.1 2.32 24.6 9.0 1584 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 2.32 1.18 0.51 0.01
Lactobacillus acidophilus NR_117812.1 1453 5 1416 97.45 2.24 14.8 1.0 1579 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 2.24 1.1 0.49 0.01
Lactiplantibacillus plantarum NR_117813.1 1466 27 1457 99.39 15.88 27.0 5.52 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 15.88 3.04 0.19 0.07
Lacticaseibacillus paracasei NR_117987.1 1441 221 1441 100.0 131.26 28.5 12.9 1597 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 131.26 45.17 0.34 0.53
Lactobacillus delbrueckii NR_118558.1 1423 108 1423 100.0 80.24 32.9 11.2 390333 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 80.24 7.81 0.1 0.26
Streptococcus thermophilus NR_118998.1 1540 599 1075 69.81 105.28 33.7 0.25 1308 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus 105.28 195.6 1.86 1.44
Limosilactobacillus reuteri NR_119069.1 1571 11 842 53.6 1.85 29.2 1.91 557436 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 1.85 2.42 1.3 0.03
Lactobacillus crispatus NR_119274.1 1557 26 1528 98.14 6.45 27.1 0.19 47770 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 6.45 6.96 1.08 0.06
Lactobacillus delbrueckii NR_126243.1 1382 1 124 8.97 0.09 34.5 0.0 1537158 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.09 0.29 3.19 0.0
Lactiplantibacillus plajomi NR_136785.1 1492 238 1492 100.0 30.38 29.1 0.87 1457217 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 30.38 53.75 1.77 0.57
Cupriavidus agavae NR_174193.1 1524 12 1490 97.77 7.54 38.6 36.2 1001822 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus 7.54 2.41 0.32 0.03
Lactiplantibacillus daoliensis NR_179285.1 1441 1 1033 71.69 0.72 10.2 1.0 2559916 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 0.72 0.45 0.63 0.0
Lactobacillus paragasseri NR_179379.1 1511 3 1510 99.93 2.29 23.2 1.0 2107999 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 2.29 0.55 0.24 0.01
Lacticaseibacillus chiayiensis NR_179712.1 1536 1179 1527 99.41 200.06 29.8 0.26 2100821 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 200.06 330.38 1.65 2.84
Limosilactobacillus balticus NR_181344.1 1569 11 1538 98.02 4.05 24.2 1.73 2759747 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 4.05 2.0 0.49 0.03
Limosilactobacillus agrestis NR_181345.1 1569 5 1479 94.26 1.95 25.9 1.4 2759748 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 1.95 1.04 0.54 0.01

Only taxa present in the abundance table above the abundance_threshold parameter appear in the table.

species reference ref length number of reads covbases % coverage mean depth mean baseq mean MAPQ taxid superkingdom kingdom phylum class order family genus mean sd depth CV % reads
Aquabacterium citratiphilum NR_024871.1 1418 8 1416 99.86 4.47 33.1 42.6 70582 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales unclassified Burkholderiales family Aquabacterium 4.47 2.55 0.57 0.03
Lactiplantibacillus paraplantarum NR_025447.1 1502 3 1498 99.73 2.2 40.1 0.67 60520 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 2.2 0.47 0.21 0.01
Lacticaseibacillus paracasei NR_025880.1 1522 2882 1519 99.8 817.34 34.5 3.08 1597 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 817.34 993.9 1.22 9.97
Cupriavidus metallidurans NR_027607.1 1493 1 259 17.35 0.17 36.1 0.0 266264 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus 0.17 0.38 2.18 0.0
Ligilactobacillus salivarius NR_028725.2 1542 6 1513 98.12 1.37 30.5 13.8 1624 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus 1.37 0.75 0.55 0.02
Lactiplantibacillus pentosus NR_029133.1 1519 21 1509 99.34 6.21 35.6 0.19 1589 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 6.21 2.8 0.45 0.07
Enterococcus durans NR_036922.1 1534 9 1360 88.66 1.98 25.3 0.56 53345 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 1.98 1.6 0.81 0.03
Enterococcus hirae NR_037082.1 1535 3 194 12.64 0.34 27.2 1.0 1354 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 0.34 0.91 2.7 0.01
Lacticaseibacillus zeae NR_037122.1 1522 1202 1519 99.8 189.75 31.7 0.09 57037 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 189.75 359.64 1.9 4.16
Lactococcus lactis NR_040955.1 1499 2 1418 94.6 1.16 39.5 0.5 1358 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 1.16 0.49 0.42 0.01
Lactococcus lactis NR_040956.1 1499 2 372 24.82 0.39 38.8 0.0 203404 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 0.39 0.72 1.85 0.01
Lacticaseibacillus paracasei NR_041054.1 1497 5 988 66.0 1.54 24.0 2.0 113557 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 1.54 1.43 0.93 0.02
Lentilactobacillus kisonensis NR_041658.1 1565 4 659 42.11 0.65 12.4 0.5 481722 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus 0.65 0.83 1.27 0.01
Lentilactobacillus rapi NR_041659.1 1566 1 49 3.13 0.03 42.9 0.0 481723 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus 0.03 0.17 5.56 0.0
Lactobacillus crispatus NR_041800.1 1518 2 207 13.64 0.26 38.9 0.0 47770 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.26 0.66 2.55 0.01
Lacticaseibacillus casei NR_041893.1 1517 65 1517 100.0 17.29 17.2 0.37 1423732 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 17.29 15.44 0.89 0.22
Lactobacillus gasseri NR_041920.1 1572 4 1054 67.05 0.87 36.5 0.0 324831 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.87 0.75 0.87 0.01
Enterococcus faecium NR_042054.1 1551 1 170 10.96 0.11 11.0 17.0 1352 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 0.11 0.31 2.85 0.0
Lactiplantibacillus plantarum NR_042394.1 1474 4 1446 98.1 1.49 18.7 0.75 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 1.49 0.61 0.41 0.01
Lactobacillus helveticus NR_042439.1 1554 3 325 20.91 0.26 26.5 2.67 585520 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.26 0.53 2.08 0.01
Latilactobacillus sakei NR_042443.1 1561 1 257 16.46 0.16 13.0 1.0 214326 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Latilactobacillus 0.16 0.37 2.25 0.0
Streptococcus salivarius NR_042776.1 1546 464 1511 97.74 82.63 26.6 0.45 1304 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus 82.63 120.81 1.46 1.61
Streptococcus vestibularis NR_042777.1 1538 140 1509 98.11 29.21 25.2 1.52 889206 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus 29.21 19.04 0.65 0.48
Streptococcus thermophilus NR_042778.1 1539 7186 1517 98.57 2951.66 33.6 17.3 1308 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus 2951.66 960.92 0.33 24.87
Lactobacillus acidophilus NR_043182.1 1478 26 1475 99.8 6.16 32.0 21.7 1579 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 6.16 7.55 1.22 0.09
Lacticaseibacillus rhamnosus NR_043408.1 1521 273 1511 99.34 78.35 23.2 1.32 47715 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 78.35 35.25 0.45 0.94
Cupriavidus metallidurans NR_074704.1 1527 15 1490 97.58 4.29 33.5 15.6 266264 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus 4.29 3.61 0.84 0.05
Lactobacillus delbrueckii NR_075019.1 1561 4 894 57.27 0.86 30.1 4.5 390333 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.86 0.83 0.97 0.01
Enterococcus hirae NR_075022.1 1563 7 534 34.17 0.9 34.8 0.71 768486 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 0.9 1.41 1.56 0.02
Limosilactobacillus reuteri NR_075036.1 1569 6 792 50.48 1.63 29.3 0.67 557436 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 1.63 1.99 1.22 0.02
Lactobacillus gasseri NR_075051.2 1573 2 555 35.28 0.57 31.4 0.0 324831 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.57 0.83 1.44 0.01
Lactiplantibacillus plantarum NR_104573.1 1527 12 615 40.28 2.24 31.3 0.08 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 2.24 3.66 1.64 0.04
Limosilactobacillus fermentum NR_104927.1 1502 1 135 8.99 0.09 38.8 1.0 1613 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 0.09 0.29 3.18 0.0
Enterococcus hirae NR_113256.1 1482 1 130 8.77 0.09 39.8 0.0 1354 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 0.09 0.28 3.22 0.0
Lacticaseibacillus rhamnosus NR_113332.1 1495 10193 1495 100.0 3625.16 34.0 33.9 47715 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 3625.16 2087.8 0.58 35.27
Lacticaseibacillus casei NR_113333.1 1495 22 1439 96.25 7.22 16.9 1.59 1582 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 7.22 4.75 0.66 0.08
Limosilactobacillus fermentum NR_113335.1 1501 2 535 35.64 0.43 35.6 0.5 1613 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 0.43 0.63 1.46 0.01
Lacticaseibacillus paracasei NR_113337.1 1495 89 1495 100.0 30.8 25.4 0.21 1597 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 30.8 24.07 0.78 0.31
Lactiplantibacillus plantarum NR_113338.1 1492 4 1468 98.39 1.9 24.9 0.5 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 1.9 0.91 0.48 0.01
Lactobacillus delbrueckii NR_113387.1 1556 9 50 3.21 0.28 37.3 0.0 1050107 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.28 1.57 5.53 0.03
Lactobacillus acidophilus NR_113638.1 1489 1 277 18.6 0.19 9.85 0.0 1579 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.19 0.39 2.09 0.0
Latilactobacillus sakei NR_113821.1 1499 1 476 31.75 0.32 11.2 0.0 1599 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Latilactobacillus 0.32 0.47 1.47 0.0
Lacticaseibacillus paracasei NR_113823.1 1497 8 1409 94.12 2.87 9.26 0.5 113557 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 2.87 1.26 0.44 0.03
Enterococcus durans NR_113900.1 1485 1 192 12.93 0.13 12.0 1.0 53345 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 0.13 0.34 2.6 0.0
Lactococcus lactis NR_113958.1 1472 1 601 40.83 0.41 11.5 0.0 203404 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 0.41 0.49 1.2 0.0
Lactococcus lactis NR_113960.1 1472 2 1417 96.26 1.49 38.4 0.0 1358 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 1.49 0.57 0.38 0.01
Enterococcus hirae NR_114452.1 1507 5 210 13.94 0.6 29.5 1.2 1354 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 0.6 1.57 2.61 0.02
Enterococcus faecium NR_114742.1 1533 12 1510 98.5 3.48 35.1 2.42 1352 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 3.48 2.5 0.72 0.04
Enterococcus hirae NR_114743.1 1535 4 213 13.88 0.46 22.3 1.5 1354 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 0.46 1.2 2.64 0.01
Enterococcus hirae NR_114783.2 1550 2 212 13.68 0.22 15.7 1.0 1354 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 0.22 0.58 2.64 0.01
Lacticaseibacillus casei NR_115322.1 1528 87 1519 99.41 16.7 19.1 2.6 1582 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 16.7 13.91 0.83 0.3
Lacticaseibacillus casei NR_115534.1 1522 1139 1517 99.67 174.43 31.3 0.07 1423732 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 174.43 343.85 1.97 3.94
Lactiplantibacillus plantarum NR_115605.1 1519 14 1516 99.8 5.14 31.6 0.71 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 5.14 2.45 0.48 0.05
Enterococcus faecium NR_115764.1 1482 1 1151 77.67 0.78 11.7 0.0 1352 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 0.78 0.42 0.54 0.0
Lactococcus cremoris NR_116443.1 1541 1 170 11.03 0.11 32.9 0.0 542833 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 0.11 0.31 2.84 0.0
Lactobacillus acidophilus NR_117062.1 1531 20 1505 98.3 6.39 32.8 9.7 1579 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 6.39 6.42 1.0 0.07
Lactobacillus crispatus NR_117063.1 1516 2 206 13.59 0.25 27.6 0.0 47770 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.25 0.64 2.59 0.01
Lactobacillus gasseri NR_117573.1 1529 3 1422 93.0 1.28 35.2 0.33 1596 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 1.28 0.68 0.53 0.01
Lactiplantibacillus plantarum NR_117813.1 1466 2 914 62.35 0.62 32.4 1.0 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 0.62 0.48 0.78 0.01
Lacticaseibacillus paracasei NR_117987.1 1441 90 1380 95.77 53.66 24.9 8.59 1597 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 53.66 20.51 0.38 0.31
Streptococcus thermophilus NR_118998.1 1540 1740 1516 98.44 311.72 34.7 0.37 1308 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus 311.72 560.68 1.8 6.02
Limosilactobacillus reuteri NR_119069.1 1571 3 503 32.02 0.85 15.1 1.0 557436 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 0.85 1.3 1.52 0.01
Lactiplantibacillus plajomi NR_136785.1 1492 7 196 13.14 0.6 36.7 1.43 1457217 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 0.6 1.72 2.85 0.02
Cupriavidus agavae NR_174193.1 1524 20 1494 98.03 12.75 34.2 36.3 1001822 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus 12.75 2.35 0.18 0.07
Lactobacillus paragasseri NR_179257.1 1495 1 1484 99.26 0.99 37.0 1.0 2107999 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.99 0.09 0.09 0.0
Lactobacillus paragasseri NR_179379.1 1511 1 90 5.96 0.06 33.3 7.0 2107999 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.06 0.24 3.97 0.0
Lacticaseibacillus chiayiensis NR_179712.1 1536 1022 1529 99.54 170.27 28.8 0.27 2100821 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 170.27 282.14 1.66 3.54
Limosilactobacillus balticus NR_181344.1 1569 4 736 46.91 0.67 35.9 0.75 2759747 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 0.67 0.79 1.18 0.01
Limosilactobacillus agrestis NR_181345.1 1569 5 911 58.06 1.24 24.0 0.4 2759748 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 1.24 1.34 1.08 0.02

Only taxa present in the abundance table above the abundance_threshold parameter appear in the table.

species reference ref length number of reads covbases % coverage mean depth mean baseq mean MAPQ taxid superkingdom kingdom phylum class order family genus mean sd depth CV % reads
Aquabacterium citratiphilum NR_024871.1 1418 5 1418 100.0 2.85 37.1 41.2 70582 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales unclassified Burkholderiales family Aquabacterium 2.85 1.02 0.36 0.02
Lacticaseibacillus paracasei NR_025880.1 1522 31 1511 99.28 8.08 37.2 1.06 1597 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 8.08 8.19 1.01 0.11
Limosilactobacillus reuteri NR_025911.1 1535 22 844 54.98 2.31 21.1 5.59 1598 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 2.31 3.79 1.64 0.08
Cupriavidus metallidurans NR_027607.1 1493 1 149 9.98 0.1 36.4 0.0 266264 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus 0.1 0.3 3.0 0.0
Ligilactobacillus salivarius NR_028725.2 1542 4 882 57.2 0.84 32.6 12.2 1624 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus 0.84 0.9 1.07 0.01
Lactiplantibacillus pentosus NR_029133.1 1519 14 1516 99.8 4.24 36.2 0.36 1589 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 4.24 2.27 0.54 0.05
Enterococcus durans NR_036922.1 1534 3 1476 96.22 1.19 32.5 7.0 53345 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 1.19 0.56 0.47 0.01
Lacticaseibacillus zeae NR_037122.1 1522 11 1288 84.63 2.76 29.2 0.18 57037 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 2.76 3.22 1.17 0.04
Lactococcus lactis NR_040955.1 1499 1 1446 96.46 0.96 24.2 0.0 1358 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 0.96 0.18 0.19 0.0
Lactococcus lactis NR_040956.1 1499 4 1487 99.2 1.84 30.3 0.0 203404 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 1.84 0.75 0.41 0.01
Lactobacillus crispatus NR_041800.1 1518 95 1388 91.44 12.59 29.9 0.1 47770 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 12.59 27.53 2.19 0.34
Lacticaseibacillus casei NR_041893.1 1517 4 337 22.21 0.53 21.7 0.75 1423732 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 0.53 1.11 2.08 0.01
Lactobacillus gasseri NR_041920.1 1572 2 1263 80.34 0.8 26.4 0.0 324831 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.8 0.4 0.49 0.01
Enterococcus faecium NR_042054.1 1551 1 511 32.95 0.33 35.3 1.0 1352 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 0.33 0.47 1.43 0.0
Lactobacillus gallinarum NR_042111.1 1546 11 1484 95.99 2.94 13.3 0.46 52242 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 2.94 2.58 0.88 0.04
Lactobacillus helveticus NR_042439.1 1554 14 1525 98.13 3.26 17.1 0.43 585520 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 3.26 1.55 0.47 0.05
Streptococcus salivarius NR_042776.1 1546 1 49 3.17 0.03 28.9 0.0 1304 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus 0.03 0.18 5.53 0.0
Streptococcus thermophilus NR_042778.1 1539 25 1511 98.18 9.94 32.4 11.0 1308 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus 9.94 3.73 0.38 0.09
Lactobacillus acidophilus NR_043182.1 1478 4063 1478 100.0 1089.44 32.5 22.2 1579 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 1089.44 1052.97 0.97 14.74
Lacticaseibacillus rhamnosus NR_043408.1 1521 3 1455 95.66 1.7 20.3 0.67 47715 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 1.7 0.54 0.32 0.01
Cupriavidus metallidurans NR_074704.1 1527 14 1486 97.32 4.99 35.2 15.4 266264 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus 4.99 4.83 0.97 0.05
Lactobacillus delbrueckii NR_075019.1 1561 5 1001 64.13 0.87 32.9 1.2 390333 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.87 0.91 1.05 0.02
Enterococcus hirae NR_075022.1 1563 4 1200 76.78 1.09 39.4 1.0 768486 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 1.09 0.97 0.89 0.01
Limosilactobacillus reuteri NR_075036.1 1569 4966 1545 98.47 1706.17 33.3 8.24 557436 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 1706.17 613.13 0.36 18.01
Lactobacillus gasseri NR_075051.2 1573 4 1254 79.72 1.7 26.6 0.0 324831 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 1.7 1.22 0.72 0.01
Lactiplantibacillus plantarum NR_104573.1 1527 10 966 63.26 3.0 27.2 0.1 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 3.0 3.35 1.11 0.04
Limosilactobacillus fermentum NR_104927.1 1502 3 912 60.72 0.75 20.3 4.0 1613 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 0.75 0.69 0.92 0.01
Enterococcus durans NR_113257.1 1482 1 136 9.18 0.09 32.3 0.0 53345 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 0.09 0.29 3.15 0.0
Lactobacillus gallinarum NR_113261.1 1486 1 202 13.59 0.14 13.0 1.0 52242 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.14 0.34 2.52 0.0
Lacticaseibacillus rhamnosus NR_113332.1 1495 47 1495 100.0 9.99 31.9 23.7 47715 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 9.99 10.56 1.06 0.17
Lacticaseibacillus casei NR_113333.1 1495 1 806 53.91 0.54 8.14 0.0 1582 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 0.54 0.5 0.92 0.0
Limosilactobacillus fermentum NR_113335.1 1501 2 80 5.33 0.1 28.1 1.0 1613 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 0.1 0.44 4.24 0.01
Lacticaseibacillus paracasei NR_113337.1 1495 1 266 17.79 0.18 23.1 1.0 1597 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 0.18 0.38 2.15 0.0
Lactiplantibacillus plantarum NR_113338.1 1492 7 1478 99.06 2.32 38.2 0.14 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 2.32 2.2 0.95 0.03
Lactobacillus delbrueckii NR_113387.1 1556 3 68 4.37 0.12 28.9 0.67 1050107 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.12 0.57 4.73 0.01
Lactobacillus acidophilus NR_113638.1 1489 228 1489 100.0 117.63 28.8 1.58 1579 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 117.63 24.83 0.21 0.83
Lactobacillus delbrueckii NR_113639.1 1489 2 1480 99.4 1.9 33.5 2.0 1585 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 1.9 0.32 0.17 0.01
Limosilactobacillus reuteri NR_113820.1 1501 2484 1501 100.0 1697.17 35.0 12.3 1598 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 1697.17 118.94 0.07 9.01
Lactococcus lactis NR_113960.1 1472 1 1281 87.02 0.87 13.9 0.0 1358 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 0.87 0.34 0.39 0.0
Enterococcus hirae NR_114452.1 1507 1 148 9.82 0.1 34.1 1.0 1354 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 0.1 0.3 3.03 0.0
Lactobacillus gallinarum NR_114722.1 1533 15 314 20.48 1.78 23.4 0.27 52242 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 1.78 4.26 2.39 0.05
Enterococcus faecium NR_114742.1 1533 9 1503 98.04 3.01 36.0 4.22 1352 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 3.01 2.81 0.93 0.03
Lacticaseibacillus casei NR_115322.1 1528 6 812 53.14 1.13 30.0 9.0 1582 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 1.13 1.21 1.07 0.02
Lacticaseibacillus casei NR_115534.1 1522 13 533 35.02 2.04 35.8 0.08 1423732 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 2.04 3.85 1.89 0.05
Lactiplantibacillus plantarum NR_115605.1 1519 20 1506 99.14 4.71 32.7 0.6 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 4.71 2.96 0.63 0.07
Lactococcus cremoris NR_116443.1 1541 1 192 12.46 0.12 38.6 0.0 542833 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 0.12 0.33 2.65 0.0
Lactobacillus helveticus NR_117060.1 1516 6 341 22.49 0.55 18.4 0.17 585520 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.55 1.36 2.45 0.02
Lactobacillus gallinarum NR_117061.1 1518 18 1033 68.05 2.7 29.1 1.0 52242 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 2.7 5.2 1.93 0.07
Lactobacillus acidophilus NR_117062.1 1531 2459 1515 98.95 1070.16 33.5 9.34 1579 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 1070.16 649.31 0.61 8.92
Lactobacillus crispatus NR_117063.1 1516 114 1420 93.67 16.39 30.8 0.87 47770 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 16.39 30.55 1.86 0.41
Lactobacillus gasseri NR_117573.1 1529 3 974 63.7 1.07 18.8 0.0 1596 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 1.07 1.06 0.99 0.01
Lactobacillus acidophilus NR_117812.1 1453 182 1453 100.0 109.78 30.0 9.46 1579 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 109.78 23.15 0.21 0.66
Lacticaseibacillus paracasei NR_117987.1 1441 1 324 22.48 0.22 34.3 2.0 1597 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 0.22 0.42 1.86 0.0
Streptococcus thermophilus NR_118998.1 1540 11 468 30.39 1.94 30.7 0.82 1308 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus 1.94 3.44 1.78 0.04
Limosilactobacillus reuteri NR_119069.1 1571 4828 1548 98.54 868.88 32.3 3.08 557436 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 868.88 931.16 1.07 17.51
Lactobacillus crispatus NR_119274.1 1557 72 1480 95.05 9.39 28.1 0.44 47770 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 9.39 19.36 2.06 0.26
Lactobacillus psittaci NR_125811.1 1421 12 1416 99.65 9.71 27.8 32.2 116089 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 9.71 2.86 0.3 0.04
Lactiplantibacillus plajomi NR_136785.1 1492 6 659 44.17 0.81 21.2 0.67 1457217 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 0.81 1.42 1.75 0.02
Cupriavidus agavae NR_174193.1 1524 8 1494 98.03 7.13 38.0 53.0 1001822 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus 7.13 1.18 0.17 0.03
Rhodopseudomonas telluris NR_178241.1 1484 2 1440 97.04 1.15 36.4 36.0 644215 Bacteria Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Rhodopseudomonas 1.15 0.43 0.38 0.01
Lactobacillus paragasseri NR_179257.1 1495 1 861 57.59 0.58 8.74 1.0 2107999 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.58 0.49 0.86 0.0
Lacticaseibacillus chiayiensis NR_179712.1 1536 18 389 25.33 1.98 33.1 0.11 2100821 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 1.98 4.8 2.42 0.07
Limosilactobacillus balticus NR_181344.1 1569 3810 1548 98.66 1079.21 30.4 1.58 2759747 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 1079.21 533.8 0.49 13.82
Limosilactobacillus agrestis NR_181345.1 1569 3000 1540 98.15 569.17 29.8 0.73 2759748 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 569.17 459.58 0.81 10.88

Only taxa present in the abundance table above the abundance_threshold parameter appear in the table.

species reference ref length number of reads covbases % coverage mean depth mean baseq mean MAPQ taxid superkingdom kingdom phylum class order family genus mean sd depth CV % reads
Aquabacterium citratiphilum NR_024871.1 1418 2 260 18.34 0.36 38.4 59.0 70582 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales unclassified Burkholderiales family Aquabacterium 0.36 0.77 2.11 0.01
Lactiplantibacillus paraplantarum NR_025447.1 1502 253 1502 100.0 138.76 32.6 2.58 60520 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 138.76 32.67 0.24 0.85
Lacticaseibacillus paracasei NR_025880.1 1522 1615 1518 99.74 501.69 34.8 2.71 1597 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 501.69 264.75 0.53 5.42
Limosilactobacillus reuteri NR_025911.1 1535 1 134 8.73 0.09 13.6 1.0 1598 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 0.09 0.28 3.23 0.0
Ligilactobacillus salivarius NR_028725.2 1542 4 572 37.09 0.61 32.9 12.0 1624 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus 0.61 0.97 1.59 0.01
Lentilactobacillus parakefiri NR_029039.1 1396 3 1396 100.0 2.51 41.1 20.7 152332 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus 2.51 0.5 0.2 0.01
Lactobacillus delbrueckii NR_029106.1 1515 1 1475 97.36 0.97 39.0 1.0 249265 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.97 0.16 0.16 0.0
Lactiplantibacillus pentosus NR_029133.1 1519 4078 1516 99.8 1340.49 34.8 0.16 1589 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 1340.49 503.83 0.38 13.69
Afipia broomeae NR_029200.1 1401 2 1344 95.93 1.89 32.4 60.0 56946 Bacteria Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Afipia 1.89 0.42 0.22 0.01
Enterococcus durans NR_036922.1 1534 10 1504 98.04 3.19 35.6 10.3 53345 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 3.19 3.24 1.02 0.03
Lacticaseibacillus zeae NR_037122.1 1522 442 1514 99.47 86.43 33.1 0.22 57037 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 86.43 127.37 1.47 1.48
Bifidobacterium animalis NR_040867.1 1529 8 1498 97.97 3.27 35.3 30.5 302911 Bacteria Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium 3.27 1.17 0.36 0.03
Lactococcus cremoris NR_040954.1 1499 94 1458 97.26 21.72 35.0 0.02 1359 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 21.72 30.39 1.4 0.32
Lactococcus lactis NR_040955.1 1499 295 1489 99.33 100.99 33.5 0.46 1358 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 100.99 47.21 0.47 0.99
Lactococcus lactis NR_040956.1 1499 102 1491 99.47 28.23 31.0 0.63 203404 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 28.23 25.93 0.92 0.34
Lacticaseibacillus paracasei NR_041054.1 1497 39 1496 99.93 9.8 29.6 0.8 113557 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 9.8 9.81 1.0 0.13
Lentilactobacillus buchneri NR_041293.1 1542 899 1533 99.42 265.57 33.9 36.1 1581 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus 265.57 176.31 0.66 3.02
Lentilactobacillus sunkii NR_041656.1 1567 129 1537 98.09 26.8 34.4 0.33 481719 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus 26.8 36.56 1.36 0.43
Lentilactobacillus kisonensis NR_041658.1 1565 80 1537 98.21 17.48 32.2 0.5 481722 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus 17.48 22.1 1.26 0.27
Lentilactobacillus rapi NR_041659.1 1566 18 1537 98.15 7.84 35.2 11.8 481723 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus 7.84 2.16 0.28 0.06
Lactobacillus crispatus NR_041800.1 1518 30 322 21.21 3.51 34.3 0.03 47770 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 3.51 8.64 2.46 0.1
Lacticaseibacillus casei NR_041893.1 1517 28 1517 100.0 10.74 29.6 2.29 1423732 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 10.74 4.44 0.41 0.09
Lactobacillus gasseri NR_041920.1 1572 4 431 27.42 0.42 40.4 0.0 324831 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.42 0.73 1.74 0.01
Lactobacillus gallinarum NR_042111.1 1546 12 1515 97.99 7.09 38.0 4.75 52242 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 7.09 1.6 0.23 0.04
Lactiplantibacillus plantarum NR_042394.1 1474 248 1474 100.0 151.67 29.4 4.58 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 151.67 13.48 0.09 0.83
Lactobacillus helveticus NR_042439.1 1554 36 1134 72.97 6.05 32.3 4.44 585520 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 6.05 8.49 1.4 0.12
Latilactobacillus sakei NR_042443.1 1561 255 1539 98.59 48.81 33.4 6.15 214326 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Latilactobacillus 48.81 42.48 0.87 0.86
Lactobacillus delbrueckii NR_042728.1 1505 1 1333 88.57 0.89 8.79 0.0 888027 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.89 0.32 0.36 0.0
Streptococcus salivarius NR_042776.1 1546 38 1506 97.41 7.84 35.0 1.21 1304 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus 7.84 6.17 0.79 0.13
Streptococcus vestibularis NR_042777.1 1538 12 1501 97.59 3.17 28.5 0.92 889206 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus 3.17 2.58 0.81 0.04
Streptococcus thermophilus NR_042778.1 1539 359 1511 98.18 131.45 33.1 12.8 1308 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus 131.45 51.42 0.39 1.2
Lactobacillus acidophilus NR_043182.1 1478 682 1478 100.0 179.52 33.1 21.5 1579 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 179.52 169.36 0.94 2.29
Lacticaseibacillus rhamnosus NR_043408.1 1521 76 1511 99.34 19.56 28.5 0.59 47715 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 19.56 11.78 0.6 0.26
Bifidobacterium longum NR_043437.1 1515 2 710 46.86 0.47 31.4 0.5 1682 Bacteria Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium 0.47 0.5 1.06 0.01
Bifidobacterium animalis NR_043438.1 1529 1 400 26.16 0.26 42.3 1.0 28025 Bacteria Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium 0.26 0.44 1.68 0.0
Cupriavidus metallidurans NR_074704.1 1527 2 281 18.4 0.24 28.8 5.5 266264 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus 0.24 0.54 2.26 0.01
Lactobacillus delbrueckii NR_075019.1 1561 34 1523 97.57 8.25 34.4 6.94 390333 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 8.25 7.05 0.85 0.11
Enterococcus hirae NR_075022.1 1563 10 1494 95.59 2.31 29.8 2.3 768486 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 2.31 1.97 0.85 0.03
Limosilactobacillus reuteri NR_075036.1 1569 8 1190 75.84 2.19 35.0 10.8 557436 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 2.19 2.19 1.0 0.03
Lactobacillus gasseri NR_075051.2 1573 3 1501 95.42 1.21 25.9 0.0 324831 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 1.21 0.51 0.42 0.01
Latilactobacillus sakei NR_104208.1 1414 6 719 50.85 1.67 27.2 2.67 214325 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Latilactobacillus 1.67 1.85 1.11 0.02
Lactiplantibacillus plantarum NR_104573.1 1527 1887 1516 99.28 514.96 33.2 0.21 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 514.96 536.73 1.04 6.33
Limosilactobacillus fermentum NR_104927.1 1502 2 438 29.16 0.47 31.1 11.0 1613 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 0.47 0.77 1.66 0.01
Enterococcus faecium NR_112039.1 1523 1 205 13.46 0.13 17.0 0.0 1352 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 0.13 0.34 2.54 0.0
Lactiplantibacillus plantarum NR_112690.1 1454 159 1454 100.0 113.42 29.5 5.96 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 113.41 14.82 0.13 0.53
Lentilactobacillus parakefiri NR_112757.1 1497 17 1497 100.0 8.42 33.3 2.65 152332 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus 8.42 5.54 0.66 0.06
Ligilactobacillus salivarius NR_112759.1 1486 2 199 13.39 0.13 19.8 3.5 1624 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus 0.13 0.34 2.54 0.01
Lactobacillus gallinarum NR_113261.1 1486 3 1404 94.48 1.07 35.7 0.33 52242 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 1.07 0.42 0.39 0.01
Lacticaseibacillus rhamnosus NR_113332.1 1495 1943 1495 100.0 594.06 34.4 30.6 47715 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 594.06 427.96 0.72 6.52
Lacticaseibacillus casei NR_113333.1 1495 6 1336 89.36 1.65 21.7 1.5 1582 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 1.65 1.48 0.9 0.02
Limosilactobacillus fermentum NR_113335.1 1501 2 1500 99.93 1.07 40.2 0.5 1613 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 1.07 0.26 0.24 0.01
Lacticaseibacillus paracasei NR_113337.1 1495 459 1495 100.0 91.02 33.1 0.42 1597 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 91.02 109.46 1.2 1.54
Lactiplantibacillus plantarum NR_113338.1 1492 2411 1492 100.0 568.5 34.6 0.21 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 568.5 593.81 1.04 8.09
Lactobacillus delbrueckii NR_113387.1 1556 14 1426 91.65 2.95 30.7 5.21 1050107 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 2.95 1.97 0.67 0.05
Lactobacillus acidophilus NR_113638.1 1489 30 1489 100.0 11.12 25.3 1.17 1579 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 11.12 4.36 0.39 0.1
Lactobacillus delbrueckii NR_113639.1 1489 3 1486 99.8 2.12 26.1 2.67 1585 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 2.12 0.57 0.27 0.01
Lentilactobacillus parakefiri NR_113819.1 1500 1 89 5.93 0.06 32.9 0.0 152332 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus 0.06 0.24 3.98 0.0
Limosilactobacillus reuteri NR_113820.1 1501 2 1429 95.2 1.31 17.0 1.0 1598 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 1.31 0.56 0.42 0.01
Latilactobacillus sakei NR_113821.1 1499 54 1499 100.0 35.09 35.4 6.93 1599 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Latilactobacillus 35.09 6.74 0.19 0.18
Lacticaseibacillus paracasei NR_113823.1 1497 54 1477 98.66 12.34 28.6 0.09 113557 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 12.34 15.42 1.25 0.18
Enterococcus faecium NR_113904.1 1485 1 115 7.74 0.08 39.9 0.0 1352 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 0.08 0.27 3.45 0.0
Lactococcus cremoris NR_113925.1 1466 8 1426 97.27 5.7 37.6 1.5 1359 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 5.7 2.06 0.36 0.03
Lactococcus lactis NR_113958.1 1472 29 1472 100.0 11.04 30.2 1.62 203404 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 11.04 4.08 0.37 0.1
Lactococcus lactis NR_113960.1 1472 211 1472 100.0 79.73 34.3 0.84 1358 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 79.73 58.03 0.73 0.71
Enterococcus hirae NR_114452.1 1507 2 185 12.28 0.23 29.4 1.0 1354 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 0.23 0.62 2.72 0.01
Lactobacillus gallinarum NR_114722.1 1533 10 241 15.72 0.99 27.1 0.2 52242 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.99 2.57 2.6 0.03
Enterococcus faecium NR_114742.1 1533 14 1508 98.37 5.18 33.4 5.86 1352 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 5.18 4.46 0.86 0.05
Enterococcus hirae NR_114743.1 1535 1 144 9.38 0.09 29.2 0.0 1354 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 0.09 0.29 3.11 0.0
Lactobacillus delbrueckii NR_115131.1 1513 1 460 30.4 0.3 36.3 0.0 390333 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.3 0.46 1.51 0.0
Latilactobacillus sakei NR_115172.1 1406 7 1406 100.0 5.39 39.0 7.14 214326 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Latilactobacillus 5.39 0.71 0.13 0.02
Lacticaseibacillus casei NR_115322.1 1528 42 791 51.77 6.29 22.9 3.74 1582 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 6.29 8.17 1.3 0.14
Lacticaseibacillus casei NR_115534.1 1522 453 1423 93.5 66.6 34.2 0.05 1423732 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 66.6 139.39 2.09 1.52
Lactiplantibacillus plantarum NR_115605.1 1519 4867 1519 100.0 1725.82 34.5 0.79 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 1725.82 715.96 0.41 16.33
Lactococcus cremoris NR_116443.1 1541 122 1509 97.92 36.56 33.7 2.46 542833 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 36.56 27.22 0.74 0.41
Lactobacillus helveticus NR_117060.1 1516 4 337 22.23 0.55 37.8 0.0 585520 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.55 1.16 2.13 0.01
Lactobacillus gallinarum NR_117061.1 1518 19 1490 98.16 4.96 33.8 0.16 52242 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 4.96 5.17 1.04 0.06
Lactobacillus acidophilus NR_117062.1 1531 425 1515 98.95 141.77 34.4 9.81 1579 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 141.77 131.16 0.93 1.43
Lactobacillus crispatus NR_117063.1 1516 29 1181 77.9 4.03 33.9 1.52 47770 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 4.03 8.43 2.09 0.1
Lactobacillus delbrueckii NR_117074.1 1514 1 591 39.04 0.39 38.9 0.0 1584 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.39 0.49 1.25 0.0
Lactobacillus delbrueckii NR_117075.1 1475 5 1324 89.76 2.96 38.6 1.0 390333 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 2.96 1.67 0.57 0.02
Bifidobacterium longum NR_117506.1 1477 1 426 28.84 0.29 17.8 1.0 216816 Bacteria Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium 0.29 0.45 1.57 0.0
Enterococcus lactis NR_117562.1 1437 1 1357 94.43 0.94 33.7 1.0 357441 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 0.94 0.23 0.24 0.0
Lactobacillus gasseri NR_117573.1 1529 3 463 30.28 0.48 34.8 0.0 1596 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.48 0.85 1.77 0.01
Lactobacillus acidophilus NR_117812.1 1453 37 1453 100.0 28.67 32.3 16.4 1579 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 28.67 5.62 0.2 0.12
Lactiplantibacillus plantarum NR_117813.1 1466 155 1460 99.59 90.81 29.3 10.1 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 90.81 16.38 0.18 0.52
Lacticaseibacillus paracasei NR_117987.1 1441 101 1441 100.0 56.43 33.3 21.3 1597 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 56.43 22.02 0.39 0.34
Streptococcus thermophilus NR_118998.1 1540 99 778 50.52 16.72 35.3 0.31 1308 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus 16.72 27.92 1.67 0.33
Limosilactobacillus reuteri NR_119069.1 1571 15 751 47.8 2.55 36.3 1.53 557436 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 2.55 3.44 1.35 0.05
Lactobacillus crispatus NR_119274.1 1557 38 913 58.64 4.64 28.5 1.24 47770 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 4.64 9.25 1.99 0.13
Lactobacillus psittaci NR_125811.1 1421 1 1276 89.8 0.9 9.2 40.0 116089 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.9 0.3 0.34 0.0
Lactiplantibacillus plajomi NR_136785.1 1492 1771 1492 100.0 274.01 31.0 1.89 1457217 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 274.01 441.66 1.61 5.94
Rhodopseudomonas telluris NR_178241.1 1484 1 1382 93.13 0.93 29.0 53.0 644215 Bacteria Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Rhodopseudomonas 0.93 0.25 0.27 0.0
Lactobacillus paragasseri NR_179257.1 1495 2 1083 72.44 0.72 23.3 1.0 2107999 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.72 0.45 0.62 0.01
Lactiplantibacillus daoliensis NR_179285.1 1441 6 1347 93.48 2.65 13.0 0.33 2559916 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 2.65 1.16 0.44 0.02
Lactobacillus paragasseri NR_179379.1 1511 1 1425 94.31 0.94 36.7 1.0 2107999 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.94 0.23 0.25 0.0
Lacticaseibacillus chiayiensis NR_179712.1 1536 378 1524 99.22 64.55 32.2 0.21 2100821 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 64.55 106.82 1.65 1.27
Limosilactobacillus balticus NR_181344.1 1569 12 1536 97.9 3.7 29.5 0.33 2759747 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 3.7 1.67 0.45 0.04
Limosilactobacillus agrestis NR_181345.1 1569 7 1535 97.83 1.74 38.9 2.57 2759748 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 1.74 1.24 0.71 0.02

Only taxa present in the abundance table above the abundance_threshold parameter appear in the table.

species reference ref length number of reads covbases % coverage mean depth mean baseq mean MAPQ taxid superkingdom kingdom phylum class order family genus mean sd depth CV % reads
Aquabacterium citratiphilum NR_024871.1 1418 5 1411 99.51 2.08 36.1 53.2 70582 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales unclassified Burkholderiales family Aquabacterium 2.08 1.47 0.71 0.01
Lactiplantibacillus paraplantarum NR_025447.1 1502 3 1475 98.2 1.28 28.3 0.33 60520 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 1.28 0.63 0.49 0.01
Lacticaseibacillus paracasei NR_025880.1 1522 62 1512 99.34 15.68 34.4 0.79 1597 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 15.68 16.98 1.08 0.14
Cupriavidus metallidurans NR_027607.1 1493 2 513 34.36 0.34 23.7 0.0 266264 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus 0.34 0.47 1.38 0.0
Ligilactobacillus salivarius NR_028725.2 1542 12 1523 98.77 4.58 26.8 13.0 1624 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus 4.58 3.13 0.68 0.03
Lactiplantibacillus pentosus NR_029133.1 1519 39 1516 99.8 9.7 34.7 0.26 1589 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 9.7 5.7 0.59 0.09
Enterococcus durans NR_036922.1 1534 6 1433 93.42 1.97 27.9 3.83 53345 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 1.97 1.58 0.8 0.01
Lacticaseibacillus zeae NR_037122.1 1522 23 1482 97.37 5.2 30.0 0.87 57037 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 5.2 7.16 1.38 0.05
Bifidobacterium animalis NR_040867.1 1529 13 1498 97.97 4.01 33.5 33.8 302911 Bacteria Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium 4.01 2.32 0.58 0.03
Lactococcus cremoris NR_040954.1 1499 1 577 38.49 0.38 36.1 0.0 1359 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 0.38 0.49 1.26 0.0
Lactococcus lactis NR_040955.1 1499 6 1489 99.33 3.37 30.8 0.0 1358 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 3.37 0.67 0.2 0.01
Lactococcus lactis NR_040956.1 1499 4 485 32.35 0.87 29.0 0.0 203404 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 0.87 1.4 1.61 0.01
Lentilactobacillus buchneri NR_041293.1 1542 2 1528 99.09 1.11 42.7 30.0 1581 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus 1.11 0.34 0.31 0.0
Lactobacillus crispatus NR_041800.1 1518 917 1513 99.67 110.17 32.0 0.07 47770 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 110.17 269.66 2.45 2.0
Lacticaseibacillus casei NR_041893.1 1517 3 544 35.86 0.57 20.1 0.67 1423732 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 0.57 0.85 1.49 0.01
Lactobacillus gasseri NR_041920.1 1572 7 860 54.71 0.94 36.3 0.14 324831 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.94 1.17 1.24 0.02
Enterococcus faecium NR_042054.1 1551 1 599 38.62 0.39 9.54 1.0 1352 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 0.39 0.49 1.26 0.0
Lactobacillus gallinarum NR_042111.1 1546 131 1514 97.93 17.27 22.9 0.27 52242 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 17.27 33.68 1.95 0.29
Lactiplantibacillus plantarum NR_042394.1 1474 1 79 5.36 0.05 41.6 1.0 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 0.05 0.23 4.2 0.0
Lactobacillus helveticus NR_042439.1 1554 41 561 36.1 3.42 25.2 0.49 585520 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 3.42 7.33 2.15 0.09
Latilactobacillus sakei NR_042443.1 1561 1 200 12.81 0.13 23.5 1.0 214326 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Latilactobacillus 0.13 0.33 2.61 0.0
Lactobacillus delbrueckii NR_042728.1 1505 1 419 27.84 0.28 9.3 1.0 888027 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.28 0.45 1.61 0.0
Streptococcus salivarius NR_042776.1 1546 5 1460 94.44 1.41 25.3 0.2 1304 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus 1.41 0.89 0.63 0.01
Streptococcus vestibularis NR_042777.1 1538 1 78 5.07 0.05 34.1 0.0 889206 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus 0.05 0.22 4.33 0.0
Streptococcus thermophilus NR_042778.1 1539 30 1510 98.12 13.31 32.1 13.0 1308 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus 13.31 3.63 0.27 0.07
Lactobacillus acidophilus NR_043182.1 1478 21080 1478 100.0 5490.02 32.6 23.1 1579 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 5490.02 5526.12 1.01 46.09
Lactobacillus delbrueckii NR_043183.1 1518 1 147 9.68 0.1 9.18 0.0 1584 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.1 0.3 3.05 0.0
Lacticaseibacillus rhamnosus NR_043408.1 1521 4 1511 99.34 2.06 31.8 0.75 47715 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 2.06 0.48 0.23 0.01
Lactobacillus taiwanensis NR_044507.1 1526 5 962 63.04 0.97 16.3 0.2 508451 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.97 1.17 1.21 0.01
Cupriavidus metallidurans NR_074704.1 1527 9 1328 86.97 2.05 32.8 12.9 266264 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus 2.05 2.4 1.17 0.02
Lactobacillus delbrueckii NR_075019.1 1561 8 1523 97.57 1.72 33.6 5.5 390333 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 1.72 1.15 0.67 0.02
Enterococcus hirae NR_075022.1 1563 8 648 41.46 1.19 37.1 0.88 768486 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 1.19 1.98 1.67 0.02
Limosilactobacillus reuteri NR_075036.1 1569 17 1538 98.02 5.1 35.3 1.47 557436 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 5.1 2.89 0.57 0.04
Lactobacillus gasseri NR_075051.2 1573 1 107 6.8 0.07 41.8 0.0 324831 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.07 0.25 3.7 0.0
Lactiplantibacillus plantarum NR_104573.1 1527 17 926 60.64 3.3 35.2 0.0 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 3.3 5.01 1.52 0.04
Limosilactobacillus fermentum NR_104927.1 1502 2 1456 96.94 1.24 27.5 15.0 1613 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 1.24 0.49 0.4 0.0
Enterococcus faecium NR_112039.1 1523 1 62 4.07 0.04 12.7 1.0 1352 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 0.04 0.2 4.85 0.0
Ligilactobacillus salivarius NR_112759.1 1486 1 1385 93.2 0.93 30.2 21.0 1624 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus 0.93 0.25 0.27 0.0
Lactobacillus gallinarum NR_113261.1 1486 6 1040 69.99 1.4 17.1 0.17 52242 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 1.4 1.11 0.8 0.01
Lacticaseibacillus rhamnosus NR_113332.1 1495 66 1495 100.0 15.9 34.4 28.0 47715 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 15.9 15.74 0.99 0.14
Limosilactobacillus fermentum NR_113335.1 1501 1 531 35.38 0.35 26.8 1.0 1613 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 0.35 0.48 1.35 0.0
Lacticaseibacillus paracasei NR_113337.1 1495 9 892 59.67 1.31 34.0 0.22 1597 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 1.31 1.98 1.51 0.02
Lactiplantibacillus plantarum NR_113338.1 1492 14 1343 90.01 4.24 32.9 0.0 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 4.24 3.93 0.93 0.03
Lactobacillus delbrueckii NR_113387.1 1556 24 183 11.76 1.05 26.7 0.96 1050107 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 1.05 4.46 4.25 0.05
Lactobacillus delbrueckii NR_113575.1 1489 1 1090 73.2 0.73 7.7 1.0 1584 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.73 0.44 0.61 0.0
Lactobacillus acidophilus NR_113638.1 1489 1330 1489 100.0 717.6 28.9 1.56 1579 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 717.6 190.08 0.26 2.91
Lactobacillus helveticus NR_113719.1 1487 4 776 52.19 0.77 25.0 0.25 1587 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.77 0.9 1.16 0.01
Limosilactobacillus reuteri NR_113820.1 1501 1 1394 92.87 0.93 40.7 39.0 1598 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 0.93 0.26 0.28 0.0
Cupriavidus metallidurans NR_114128.1 1457 4 1456 99.93 2.85 38.2 9.75 119219 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus 2.85 0.97 0.34 0.01
Enterococcus hirae NR_114452.1 1507 1 62 4.11 0.04 37.0 0.0 1354 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 0.04 0.2 4.83 0.0
Lactobacillus gallinarum NR_114722.1 1533 107 1520 99.15 13.66 24.9 0.56 52242 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 13.66 29.04 2.13 0.23
Enterococcus faecium NR_114742.1 1533 13 1510 98.5 6.69 35.7 5.85 1352 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 6.69 3.56 0.53 0.03
Lacticaseibacillus casei NR_115322.1 1528 4 293 19.18 0.5 36.1 6.0 1582 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 0.5 1.14 2.29 0.01
Lacticaseibacillus casei NR_115534.1 1522 31 610 40.08 4.58 34.4 0.06 1423732 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 4.58 9.25 2.02 0.07
Lactiplantibacillus plantarum NR_115605.1 1519 24 1509 99.34 7.51 37.2 0.25 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 7.51 4.11 0.55 0.05
Lactococcus cremoris NR_116443.1 1541 2 1027 66.64 0.75 41.0 0.0 542833 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 0.75 0.6 0.8 0.0
Lactobacillus helveticus NR_117060.1 1516 23 322 21.24 2.09 23.6 0.13 585520 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 2.09 5.41 2.59 0.05
Lactobacillus gallinarum NR_117061.1 1518 126 1428 94.07 17.37 23.5 0.31 52242 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 17.37 34.59 1.99 0.28
Lactobacillus acidophilus NR_117062.1 1531 15505 1515 98.95 6823.65 34.2 9.16 1579 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 6823.65 4018.92 0.59 33.9
Lactobacillus crispatus NR_117063.1 1516 923 1422 93.8 109.44 32.7 0.1 47770 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 109.44 272.12 2.49 2.02
Lactobacillus gasseri NR_117573.1 1529 4 1448 94.7 1.6 31.5 0.25 1596 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 1.6 0.94 0.58 0.01
Lactobacillus acidophilus NR_117812.1 1453 832 1453 100.0 534.28 28.0 8.18 1579 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 534.28 70.1 0.13 1.82
Lactobacillus delbrueckii NR_118877.1 1488 1 726 48.79 0.49 8.7 1.0 1584 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.49 0.5 1.02 0.0
Streptococcus thermophilus NR_118998.1 1540 25 500 32.47 4.6 36.2 0.88 1308 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus 4.6 8.25 1.79 0.05
Limosilactobacillus reuteri NR_119069.1 1571 4 868 55.25 0.92 35.5 7.0 557436 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 0.92 1.07 1.16 0.01
Lactobacillus crispatus NR_119274.1 1557 877 1526 98.01 103.89 31.7 0.09 47770 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 103.89 247.62 2.38 1.92
Lactobacillus psittaci NR_125811.1 1421 2 946 66.57 0.82 7.9 28.5 116089 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.82 0.68 0.82 0.0
Lactiplantibacillus plajomi NR_136785.1 1492 5 229 15.35 0.45 30.2 4.6 1457217 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 0.45 1.24 2.73 0.01
Cupriavidus agavae NR_174193.1 1524 8 1494 98.03 5.36 30.2 35.6 1001822 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus 5.36 2.33 0.44 0.02
Lactobacillus paragasseri NR_179257.1 1495 1 602 40.27 0.4 14.0 1.0 2107999 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.4 0.49 1.22 0.0
Lactobacillus paragasseri NR_179379.1 1511 2 975 64.53 0.65 37.5 4.5 2107999 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.65 0.48 0.74 0.0
Lacticaseibacillus chiayiensis NR_179712.1 1536 24 1457 94.86 3.5 28.4 0.17 2100821 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 3.5 5.88 1.68 0.05
Limosilactobacillus balticus NR_181344.1 1569 6 939 59.85 0.98 35.3 0.17 2759747 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 0.98 1.08 1.11 0.01
Limosilactobacillus agrestis NR_181345.1 1569 9 1536 97.9 2.79 33.6 0.22 2759748 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 2.79 1.63 0.58 0.02

Only taxa present in the abundance table above the abundance_threshold parameter appear in the table.

species reference ref length number of reads covbases % coverage mean depth mean baseq mean MAPQ taxid superkingdom kingdom phylum class order family genus mean sd depth CV % reads
Aquabacterium citratiphilum NR_024871.1 1418 2 1412 99.58 1.32 39.8 59.5 70582 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales unclassified Burkholderiales family Aquabacterium 1.32 0.47 0.36 0.02
Lactiplantibacillus paraplantarum NR_025447.1 1502 1 873 58.12 0.58 43.5 1.0 60520 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 0.58 0.49 0.85 0.01
Lacticaseibacillus paracasei NR_025880.1 1522 188 1512 99.34 42.73 33.4 0.43 1597 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 42.73 52.86 1.24 1.43
Ligilactobacillus salivarius NR_028725.2 1542 6 1512 98.05 1.9 26.6 17.3 1624 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus 1.9 0.62 0.33 0.05
Lactobacillus delbrueckii NR_029106.1 1515 1 286 18.88 0.19 27.5 1.0 249265 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.19 0.39 2.07 0.01
Lactiplantibacillus pentosus NR_029133.1 1519 20 1327 87.36 3.58 33.2 0.25 1589 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 3.58 3.24 0.91 0.15
Enterococcus durans NR_036922.1 1534 5 1502 97.91 2.5 34.3 0.8 53345 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 2.5 0.86 0.35 0.04
Lacticaseibacillus zeae NR_037122.1 1522 384 1520 99.87 193.14 34.4 13.2 57037 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 193.14 34.96 0.18 2.91
Lactococcus cremoris NR_040954.1 1499 2 432 28.82 0.53 36.2 0.0 1359 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 0.53 0.86 1.61 0.02
Lactococcus lactis NR_040955.1 1499 3 862 57.5 0.74 26.3 0.33 1358 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 0.74 0.72 0.98 0.02
Lactococcus lactis NR_040956.1 1499 2 690 46.03 0.52 27.1 0.0 203404 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 0.52 0.6 1.16 0.02
Lacticaseibacillus paracasei NR_041054.1 1497 2 1440 96.19 1.22 16.2 36.0 113557 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 1.22 0.5 0.41 0.02
Lentilactobacillus buchneri NR_041293.1 1542 1 484 31.39 0.31 24.4 45.0 1581 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus 0.31 0.46 1.48 0.01
Lactobacillus crispatus NR_041800.1 1518 1 225 14.82 0.15 36.8 0.0 47770 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.15 0.36 2.4 0.01
Lacticaseibacillus casei NR_041893.1 1517 35 1517 100.0 23.42 25.3 1.74 1423732 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 23.42 6.05 0.26 0.27
Lactobacillus gasseri NR_041920.1 1572 2613 1537 97.77 506.64 31.1 0.03 324831 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 506.64 474.32 0.94 19.82
Lactiplantibacillus plantarum NR_042394.1 1474 1 1465 99.39 0.99 36.5 1.0 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 0.99 0.08 0.08 0.01
Lactobacillus helveticus NR_042439.1 1554 1 119 7.66 0.08 33.6 0.0 585520 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.08 0.27 3.47 0.01
Latilactobacillus sakei NR_042443.1 1561 2 194 12.43 0.18 26.1 10.5 214326 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Latilactobacillus 0.18 0.51 2.83 0.02
Streptococcus salivarius NR_042776.1 1546 2 1430 92.5 0.93 39.0 0.5 1304 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus 0.93 0.26 0.29 0.02
Streptococcus thermophilus NR_042778.1 1539 25 1511 98.18 11.04 29.9 7.4 1308 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus 11.04 2.48 0.23 0.19
Lactobacillus acidophilus NR_043182.1 1478 28 1382 93.5 6.1 29.4 23.4 1579 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 6.1 7.97 1.31 0.21
Lacticaseibacillus rhamnosus NR_043408.1 1521 7 1511 99.34 3.17 32.9 0.57 47715 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 3.17 1.67 0.52 0.05
Bifidobacterium longum NR_043437.1 1515 3 1414 93.33 1.15 20.2 15.7 1682 Bacteria Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium 1.15 0.51 0.44 0.02
Lactobacillus taiwanensis NR_044507.1 1526 431 1524 99.87 65.31 29.3 0.04 508451 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 65.31 120.83 1.85 3.27
Cupriavidus metallidurans NR_074704.1 1527 10 1490 97.58 3.78 30.1 16.2 266264 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus 3.78 2.89 0.77 0.08
Lactobacillus delbrueckii NR_075019.1 1561 5 347 22.23 0.35 29.8 12.2 390333 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.35 0.85 2.45 0.04
Enterococcus hirae NR_075022.1 1563 4 294 18.81 0.59 35.9 0.75 768486 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 0.59 1.26 2.13 0.03
Limosilactobacillus reuteri NR_075036.1 1569 3 358 22.82 0.31 16.4 0.33 557436 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 0.31 0.61 1.98 0.02
Lactobacillus gasseri NR_075051.2 1573 2628 1549 98.47 518.51 30.8 0.03 324831 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 518.51 468.82 0.9 19.94
Lactiplantibacillus plantarum NR_104573.1 1527 12 740 48.46 2.44 38.7 0.0 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 2.44 3.73 1.53 0.09
Limosilactobacillus fermentum NR_104927.1 1502 2 927 61.72 0.62 41.4 20.0 1613 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 0.62 0.49 0.79 0.02
Ligilactobacillus salivarius NR_112759.1 1486 1 1465 98.59 0.99 41.5 1.0 1624 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus 0.99 0.12 0.12 0.01
Lactobacillus gallinarum NR_113261.1 1486 1 771 51.88 0.52 6.47 0.0 52242 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.52 0.5 0.96 0.01
Lacticaseibacillus rhamnosus NR_113332.1 1495 62 1495 100.0 20.28 30.9 22.3 47715 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 20.28 9.58 0.47 0.47
Lacticaseibacillus casei NR_113333.1 1495 15 1495 100.0 7.85 27.5 1.8 1582 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 7.85 4.32 0.55 0.11
Lacticaseibacillus paracasei NR_113337.1 1495 10 1494 99.93 3.53 17.1 0.2 1597 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 3.53 1.52 0.43 0.08
Lactiplantibacillus plantarum NR_113338.1 1492 2 270 18.1 0.25 36.5 0.0 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 0.25 0.58 2.28 0.02
Lactobacillus delbrueckii NR_113387.1 1556 6 574 36.89 0.53 20.8 1.0 1050107 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.53 1.03 1.94 0.05
Lactobacillus acidophilus NR_113638.1 1489 2 1368 91.87 1.49 13.5 0.0 1579 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 1.49 0.64 0.43 0.02
Lactobacillus delbrueckii NR_113639.1 1489 1 132 8.87 0.09 13.6 1.0 1585 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.09 0.28 3.21 0.01
Limosilactobacillus reuteri NR_113820.1 1501 3 1380 91.94 1.34 20.4 0.67 1598 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 1.34 0.62 0.46 0.02
Lacticaseibacillus paracasei NR_113823.1 1497 1 1319 88.11 0.88 10.3 0.0 113557 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 0.88 0.32 0.37 0.01
Lactococcus lactis NR_113958.1 1472 1 186 12.64 0.13 27.4 0.0 203404 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 0.13 0.33 2.63 0.01
Lactococcus lactis NR_113960.1 1472 1 545 37.02 0.37 39.7 31.0 1358 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 0.37 0.48 1.3 0.01
Enterococcus faecium NR_114742.1 1533 10 1298 84.67 3.18 36.8 3.9 1352 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 3.18 3.36 1.06 0.08
Lacticaseibacillus casei NR_115322.1 1528 577 1521 99.54 71.69 33.2 3.85 1582 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 71.69 148.18 2.07 4.38
Lacticaseibacillus casei NR_115534.1 1522 326 1408 92.51 93.36 34.6 0.56 1423732 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 93.36 107.57 1.15 2.47
Lactiplantibacillus plantarum NR_115605.1 1519 22 1509 99.34 5.66 35.9 0.18 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 5.66 3.69 0.65 0.17
Lactococcus cremoris NR_116443.1 1541 4 855 55.48 1.07 33.8 0.0 542833 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 1.07 1.28 1.19 0.03
Lactobacillus helveticus NR_117060.1 1516 1 74 4.88 0.05 36.3 0.0 585520 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.05 0.22 4.41 0.01
Lactobacillus acidophilus NR_117062.1 1531 18 1507 98.43 6.39 33.5 7.72 1579 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 6.39 5.79 0.91 0.14
Lactobacillus crispatus NR_117063.1 1516 1 156 10.29 0.1 39.8 0.0 47770 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.1 0.3 2.95 0.01
Bifidobacterium longum NR_117506.1 1477 3 1459 98.78 1.56 31.4 8.33 216816 Bacteria Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium 1.56 0.52 0.33 0.02
Lactobacillus gasseri NR_117573.1 1529 974 1513 98.95 220.22 30.7 0.54 1596 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 220.22 278.45 1.26 7.39
Lactobacillus acidophilus NR_117812.1 1453 3 1431 98.49 2.15 32.1 0.67 1579 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 2.15 0.52 0.24 0.02
Lactiplantibacillus plantarum NR_117813.1 1466 1 70 4.77 0.05 42.1 0.0 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 0.05 0.21 4.47 0.01
Lacticaseibacillus paracasei NR_117987.1 1441 6 1292 89.66 3.18 24.2 16.2 1597 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 3.18 1.81 0.57 0.05
Streptococcus thermophilus NR_118998.1 1540 17 432 28.05 2.91 35.4 0.82 1308 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus 2.91 5.58 1.92 0.13
Limosilactobacillus reuteri NR_119069.1 1571 3 472 30.04 0.43 19.8 0.67 557436 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 0.43 0.71 1.65 0.02
Lactobacillus crispatus NR_119274.1 1557 6 1255 80.6 1.27 16.8 0.17 47770 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 1.27 1.39 1.09 0.05
Lactobacillus psittaci NR_125811.1 1421 1 286 20.13 0.2 9.38 0.0 116089 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.2 0.4 1.99 0.01
Lactiplantibacillus plajomi NR_136785.1 1492 7 654 43.83 1.13 26.8 2.57 1457217 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 1.13 1.77 1.57 0.05
Bifidobacterium longum NR_145535.1 1494 5 670 44.85 0.95 28.3 1.8 1931217 Bacteria Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium 0.95 1.09 1.15 0.04
Cupriavidus agavae NR_174193.1 1524 16 1490 97.77 8.87 31.1 25.8 1001822 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus 8.87 2.69 0.3 0.12
Lactobacillus paragasseri NR_179257.1 1495 554 1495 100.0 371.32 31.6 3.62 2107999 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 371.32 65.58 0.18 4.2
Lactobacillus paragasseri NR_179379.1 1511 2036 1511 100.0 1291.77 34.1 6.02 2107999 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 1291.77 77.87 0.06 15.45
Lacticaseibacillus chiayiensis NR_179712.1 1536 299 1519 98.89 80.24 32.9 4.57 2100821 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 80.24 59.24 0.74 2.27
Limosilactobacillus balticus NR_181344.1 1569 6 1537 97.96 2.3 29.2 0.17 2759747 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 2.3 0.7 0.3 0.05
Limosilactobacillus agrestis NR_181345.1 1569 1 149 9.5 0.09 41.0 0.0 2759748 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 0.09 0.29 3.09 0.01

Only taxa present in the abundance table above the abundance_threshold parameter appear in the table.

species reference ref length number of reads covbases % coverage mean depth mean baseq mean MAPQ taxid superkingdom kingdom phylum class order family genus mean sd depth CV % reads
Aquabacterium citratiphilum NR_024871.1 1418 1 279 19.68 0.2 38.2 60.0 70582 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales unclassified Burkholderiales family Aquabacterium 0.2 0.4 2.02 0.0
Lacticaseibacillus paracasei NR_025880.1 1522 1523 1522 100.0 439.93 34.7 3.11 1597 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 439.93 515.78 1.17 4.64
Cupriavidus metallidurans NR_027607.1 1493 1 254 17.01 0.17 33.0 0.0 266264 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus 0.17 0.38 2.21 0.0
Ligilactobacillus salivarius NR_028725.2 1542 6 965 62.58 1.38 37.9 17.7 1624 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus 1.38 1.29 0.94 0.02
Lactobacillus delbrueckii NR_029106.1 1515 1 437 28.84 0.29 40.9 12.0 249265 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.29 0.45 1.57 0.0
Lactiplantibacillus pentosus NR_029133.1 1519 26 1509 99.34 6.77 35.5 0.35 1589 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 6.77 5.44 0.8 0.08
Enterococcus durans NR_036922.1 1534 10 1501 97.85 2.62 35.3 0.7 53345 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 2.62 1.72 0.66 0.03
Enterococcus hirae NR_037082.1 1535 3 1270 82.74 0.93 12.3 1.0 1354 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 0.93 0.52 0.56 0.01
Lacticaseibacillus zeae NR_037122.1 1522 656 1515 99.54 121.23 30.8 0.23 57037 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 121.23 183.88 1.52 2.0
Bifidobacterium animalis NR_040867.1 1529 8 1494 97.71 2.79 34.6 53.6 302911 Bacteria Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium 2.79 1.12 0.4 0.02
Lactococcus cremoris NR_040954.1 1499 3 571 38.09 1.09 34.4 0.0 1359 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 1.09 1.41 1.29 0.01
Lactococcus lactis NR_040955.1 1499 3 431 28.75 0.36 31.8 0.0 1358 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 0.36 0.62 1.7 0.01
Lactococcus lactis NR_040956.1 1499 3 1302 86.86 0.98 36.9 0.0 203404 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 0.98 0.5 0.5 0.01
Lacticaseibacillus paracasei NR_041054.1 1497 4 725 48.43 0.91 32.5 0.0 113557 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 0.91 1.02 1.13 0.01
Lentilactobacillus sunkii NR_041656.1 1567 3 89 5.68 0.12 36.2 0.33 481719 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus 0.12 0.54 4.53 0.01
Lentilactobacillus kisonensis NR_041658.1 1565 1 49 3.13 0.03 38.4 0.0 481722 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus 0.03 0.17 5.56 0.0
Lentilactobacillus rapi NR_041659.1 1566 1 47 3.0 0.03 28.4 0.0 481723 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus 0.03 0.17 5.68 0.0
Lactobacillus crispatus NR_041800.1 1518 119 1476 97.23 15.0 30.6 0.2 47770 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 15.0 34.06 2.27 0.36
Lacticaseibacillus casei NR_041893.1 1517 58 1517 100.0 21.18 22.3 1.53 1423732 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 21.18 9.89 0.47 0.18
Lactobacillus gasseri NR_041920.1 1572 10 914 58.14 2.1 32.3 0.0 324831 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 2.1 1.88 0.9 0.03
Enterococcus faecium NR_042054.1 1551 4 182 11.73 0.38 25.2 1.75 1352 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 0.38 1.09 2.87 0.01
Lactobacillus gallinarum NR_042111.1 1546 17 1472 95.21 3.05 21.5 0.41 52242 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 3.05 3.31 1.08 0.05
Lactobacillus helveticus NR_042439.1 1554 14 1519 97.75 3.94 22.4 1.29 585520 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 3.94 2.08 0.53 0.04
Latilactobacillus sakei NR_042443.1 1561 1 199 12.75 0.13 41.8 14.0 214326 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Latilactobacillus 0.13 0.33 2.62 0.0
Streptococcus salivarius NR_042776.1 1546 681 1523 98.51 127.8 27.7 0.35 1304 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus 127.8 184.97 1.45 2.07
Streptococcus vestibularis NR_042777.1 1538 184 1507 97.98 33.39 26.8 0.75 889206 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus 33.39 28.71 0.86 0.56
Streptococcus thermophilus NR_042778.1 1539 8381 1516 98.51 3322.21 33.7 17.0 1308 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus 3322.21 1469.67 0.44 25.51
Lactobacillus acidophilus NR_043182.1 1478 4080 1478 100.0 1103.21 32.7 22.2 1579 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 1103.21 1056.99 0.96 12.42
Lacticaseibacillus rhamnosus NR_043408.1 1521 221 1511 99.34 54.53 26.7 1.17 47715 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 54.53 32.02 0.59 0.67
Bifidobacterium longum NR_043437.1 1515 1 299 19.74 0.2 19.7 1.0 1682 Bacteria Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium 0.2 0.4 2.02 0.0
Bifidobacterium animalis NR_043438.1 1529 2 1199 78.42 0.85 37.2 9.0 28025 Bacteria Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium 0.85 0.51 0.6 0.01
Lactobacillus taiwanensis NR_044507.1 1526 2 211 13.83 0.25 25.3 0.0 508451 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.25 0.63 2.57 0.01
Cupriavidus metallidurans NR_074704.1 1527 4 477 31.24 0.95 31.7 10.0 266264 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus 0.95 1.49 1.56 0.01
Lactobacillus delbrueckii NR_075019.1 1561 4 1506 96.48 1.48 35.2 0.75 390333 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 1.48 0.76 0.52 0.01
Enterococcus hirae NR_075022.1 1563 7 460 29.43 0.84 30.0 2.43 768486 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 0.84 1.4 1.67 0.02
Limosilactobacillus reuteri NR_075036.1 1569 7 1454 92.67 1.61 29.0 2.71 557436 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 1.61 1.16 0.72 0.02
Lactobacillus gasseri NR_075051.2 1573 5 805 51.18 1.1 35.1 0.0 324831 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 1.1 1.27 1.15 0.02
Lactiplantibacillus plantarum NR_104573.1 1527 13 1191 78.0 3.53 35.1 0.0 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 3.53 3.86 1.1 0.04
Limosilactobacillus fermentum NR_104927.1 1502 2 351 23.37 0.23 40.3 0.5 1613 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 0.23 0.42 1.81 0.01
Enterococcus faecium NR_112039.1 1523 3 188 12.34 0.33 11.6 1.0 1352 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 0.33 0.89 2.74 0.01
Lactiplantibacillus plantarum NR_112690.1 1454 1 1402 96.42 0.96 36.5 1.0 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 0.96 0.19 0.19 0.0
Ligilactobacillus salivarius NR_112759.1 1486 1 428 28.8 0.29 23.2 1.0 1624 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus 0.29 0.45 1.57 0.0
Enterococcus hirae NR_113256.1 1482 1 128 8.64 0.09 15.8 0.0 1354 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 0.09 0.28 3.25 0.0
Lactobacillus gallinarum NR_113261.1 1486 1 153 10.3 0.1 13.2 1.0 52242 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.1 0.3 2.95 0.0
Lacticaseibacillus rhamnosus NR_113332.1 1495 8714 1495 100.0 2794.45 33.7 32.5 47715 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 2794.45 1999.6 0.72 26.53
Lacticaseibacillus casei NR_113333.1 1495 12 1393 93.18 4.25 16.3 0.33 1582 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 4.25 3.47 0.82 0.04
Lacticaseibacillus paracasei NR_113337.1 1495 46 1495 100.0 16.59 28.5 0.22 1597 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 16.59 11.89 0.72 0.14
Lactiplantibacillus plantarum NR_113338.1 1492 11 1486 99.6 2.53 34.7 0.18 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 2.53 2.76 1.09 0.03
Lactobacillus delbrueckii NR_113387.1 1556 15 68 4.37 0.49 36.2 0.33 1050107 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.49 2.61 5.29 0.05
Lactobacillus acidophilus NR_113638.1 1489 191 1489 100.0 94.2 28.1 1.81 1579 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 94.2 16.67 0.18 0.58
Limosilactobacillus reuteri NR_113820.1 1501 1 1365 90.94 0.91 21.1 1.0 1598 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 0.91 0.29 0.32 0.0
Lacticaseibacillus paracasei NR_113823.1 1497 4 1394 93.12 1.94 9.44 1.0 113557 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 1.94 0.83 0.43 0.01
Lactococcus lactis NR_113958.1 1472 1 246 16.71 0.17 25.3 0.0 203404 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 0.17 0.37 2.23 0.0
Lactococcus lactis NR_113960.1 1472 1 427 29.01 0.29 41.7 0.0 1358 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 0.29 0.45 1.56 0.0
Enterococcus hirae NR_114452.1 1507 2 192 12.74 0.24 31.5 0.0 1354 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 0.24 0.63 2.67 0.01
Lactobacillus gallinarum NR_114722.1 1533 9 220 14.35 1.01 24.0 0.44 52242 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 1.01 2.6 2.57 0.03
Enterococcus faecium NR_114742.1 1533 14 1509 98.43 4.72 29.1 3.21 1352 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 4.72 3.18 0.67 0.04
Enterococcus hirae NR_114743.1 1535 3 180 11.73 0.29 25.5 0.0 1354 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 0.29 0.83 2.89 0.01
Lactobacillus delbrueckii NR_115131.1 1513 1 374 24.72 0.25 36.2 0.0 390333 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.25 0.43 1.75 0.0
Lacticaseibacillus casei NR_115322.1 1528 68 1528 100.0 13.83 16.1 5.9 1582 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 13.83 10.94 0.79 0.21
Lacticaseibacillus casei NR_115534.1 1522 624 1511 99.28 93.02 32.4 0.08 1423732 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 93.02 185.95 2.0 1.9
Lactiplantibacillus plantarum NR_115605.1 1519 24 1517 99.87 7.51 32.8 1.0 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 7.51 3.45 0.46 0.07
Lactococcus cremoris NR_116443.1 1541 4 952 61.78 0.84 13.8 0.0 542833 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 0.84 0.81 0.97 0.01
Lactobacillus helveticus NR_117060.1 1516 3 815 53.76 0.61 15.2 0.0 585520 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.61 0.62 1.02 0.01
Lactobacillus gallinarum NR_117061.1 1518 18 1012 66.67 2.56 21.8 0.39 52242 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 2.56 4.69 1.83 0.05
Lactobacillus acidophilus NR_117062.1 1531 1704 1512 98.76 677.66 33.4 8.64 1579 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 677.66 452.83 0.67 5.19
Lactobacillus crispatus NR_117063.1 1516 108 1196 78.89 12.81 32.5 0.41 47770 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 12.81 31.23 2.44 0.33
Lactobacillus gasseri NR_117573.1 1529 2 547 35.78 0.67 40.9 0.5 1596 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.67 0.92 1.37 0.01
Lactobacillus acidophilus NR_117812.1 1453 198 1453 100.0 136.3 31.4 14.4 1579 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 136.3 22.84 0.17 0.6
Lacticaseibacillus paracasei NR_117987.1 1441 132 1436 99.65 71.95 30.6 15.0 1597 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 71.95 35.46 0.49 0.4
Streptococcus thermophilus NR_118998.1 1540 1400 1510 98.05 250.43 33.9 0.38 1308 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus 250.43 445.93 1.78 4.26
Limosilactobacillus reuteri NR_119069.1 1571 4 777 49.46 0.83 35.8 5.75 557436 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 0.83 0.9 1.09 0.01
Lactobacillus crispatus NR_119274.1 1557 112 1508 96.85 14.67 30.9 0.1 47770 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 14.67 29.68 2.02 0.34
Lactiplantibacillus plajomi NR_136785.1 1492 3 402 26.94 0.39 21.8 0.33 1457217 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 0.39 0.77 1.96 0.01
Cupriavidus agavae NR_174193.1 1524 4 1490 97.77 2.42 37.2 25.2 1001822 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus 2.42 0.9 0.37 0.01
Lactobacillus paragasseri NR_179379.1 1511 4 1511 100.0 2.59 38.6 2.75 2107999 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 2.59 0.52 0.2 0.01
Lacticaseibacillus chiayiensis NR_179712.1 1536 581 1526 99.35 97.04 30.8 0.33 2100821 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 97.04 155.92 1.61 1.77
Limosilactobacillus balticus NR_181344.1 1569 6 1499 95.54 1.99 31.0 0.67 2759747 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 1.99 0.93 0.47 0.02
Limosilactobacillus agrestis NR_181345.1 1569 4 501 31.93 0.46 32.6 0.0 2759748 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 0.46 0.72 1.58 0.01

Only taxa present in the abundance table above the abundance_threshold parameter appear in the table.

species reference ref length number of reads covbases % coverage mean depth mean baseq mean MAPQ taxid superkingdom kingdom phylum class order family genus mean sd depth CV % reads
Aquabacterium citratiphilum NR_024871.1 1418 8 1417 99.93 3.49 34.0 32.6 70582 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales unclassified Burkholderiales family Aquabacterium 3.49 2.16 0.62 0.02
Lactiplantibacillus paraplantarum NR_025447.1 1502 286 1502 100.0 122.74 28.3 0.86 60520 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 122.74 55.96 0.46 0.88
Lacticaseibacillus paracasei NR_025880.1 1522 62 1519 99.8 17.56 36.5 1.19 1597 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 17.56 12.63 0.72 0.19
Cupriavidus metallidurans NR_027607.1 1493 2 225 15.07 0.26 39.2 0.0 266264 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus 0.26 0.64 2.47 0.01
Ligilactobacillus salivarius NR_028725.2 1542 12 962 62.39 1.79 33.3 16.9 1624 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus 1.79 1.99 1.11 0.04
Lactiplantibacillus pentosus NR_029133.1 1519 8006 1519 100.0 2899.2 35.2 0.52 1589 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 2899.2 991.35 0.34 24.54
Enterococcus durans NR_036922.1 1534 4 568 37.03 0.78 37.8 7.0 53345 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 0.78 1.14 1.46 0.01
Lacticaseibacillus zeae NR_037122.1 1522 28 1021 67.08 4.49 31.7 0.11 57037 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 4.49 8.27 1.84 0.09
Lactococcus cremoris NR_040954.1 1499 3 1489 99.33 2.05 39.7 1.67 1359 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 2.05 0.33 0.16 0.01
Lactococcus lactis NR_040955.1 1499 3 1479 98.67 1.42 36.4 0.0 1358 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 1.42 0.74 0.52 0.01
Lactococcus lactis NR_040956.1 1499 4 856 57.1 1.46 33.8 0.0 203404 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 1.46 1.56 1.07 0.01
Lacticaseibacillus paracasei NR_041054.1 1497 2 1214 81.1 1.03 35.6 0.0 113557 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 1.03 0.64 0.62 0.01
Lentilactobacillus sunkii NR_041656.1 1567 5 482 30.76 0.54 21.2 0.6 481719 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus 0.54 0.9 1.67 0.02
Lentilactobacillus rapi NR_041659.1 1566 2 348 22.22 0.3 13.1 2.0 481723 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus 0.3 0.6 2.02 0.01
Lactobacillus crispatus NR_041800.1 1518 8 221 14.56 0.99 30.2 0.12 47770 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.99 2.51 2.53 0.02
Lacticaseibacillus casei NR_041893.1 1517 1 651 42.91 0.43 38.5 1.0 1423732 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 0.43 0.49 1.15 0.0
Lactobacillus gasseri NR_041920.1 1572 3 599 38.1 0.59 28.5 0.33 324831 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.59 0.87 1.47 0.01
Enterococcus faecium NR_042054.1 1551 1 177 11.41 0.11 13.5 1.0 1352 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 0.11 0.32 2.79 0.0
Lactobacillus gallinarum NR_042111.1 1546 6 1508 97.54 1.47 34.6 1.33 52242 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 1.47 1.21 0.83 0.02
Lactiplantibacillus plantarum NR_042394.1 1474 462 1474 100.0 264.32 29.1 4.38 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 264.32 26.49 0.1 1.42
Lactobacillus helveticus NR_042439.1 1554 7 1522 97.94 1.55 36.7 2.43 585520 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 1.55 1.02 0.66 0.02
Streptococcus salivarius NR_042776.1 1546 141 1507 97.48 29.54 27.9 0.93 1304 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus 29.54 32.96 1.12 0.43
Streptococcus vestibularis NR_042777.1 1538 28 1483 96.42 5.42 21.5 2.07 889206 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus 5.42 4.39 0.81 0.09
Streptococcus thermophilus NR_042778.1 1539 1957 1513 98.31 798.02 34.0 17.6 1308 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus 798.02 265.02 0.33 6.0
Lactobacillus acidophilus NR_043182.1 1478 417 1478 100.0 113.9 33.6 22.4 1579 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 113.9 106.41 0.93 1.28
Lacticaseibacillus rhamnosus NR_043408.1 1521 5 1511 99.34 3.18 35.8 0.8 47715 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 3.18 0.5 0.16 0.02
Cupriavidus metallidurans NR_074704.1 1527 16 733 48.0 3.2 31.4 13.9 266264 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus 3.2 5.06 1.58 0.05
Lactobacillus delbrueckii NR_075019.1 1561 9 1523 97.57 2.84 24.5 9.44 390333 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 2.84 1.54 0.54 0.03
Enterococcus hirae NR_075022.1 1563 5 646 41.33 0.92 35.7 9.6 768486 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 0.92 1.35 1.48 0.02
Limosilactobacillus reuteri NR_075036.1 1569 17 1537 97.96 2.74 35.6 0.82 557436 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 2.74 2.61 0.95 0.05
Lactobacillus gasseri NR_075051.2 1573 4 289 18.37 0.28 34.2 0.0 324831 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.28 0.62 2.25 0.01
Lactiplantibacillus plantarum NR_104573.1 1527 2860 1512 99.02 891.06 33.1 0.28 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 891.06 754.54 0.85 8.77
Limosilactobacillus fermentum NR_104927.1 1502 667 1502 100.0 318.08 34.5 15.8 1613 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 318.08 100.36 0.32 2.04
Lactiplantibacillus plantarum NR_112690.1 1454 240 1454 100.0 166.45 28.3 6.4 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 166.45 14.06 0.08 0.74
Ligilactobacillus salivarius NR_112759.1 1486 2 1264 85.06 1.38 32.0 9.5 1624 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus 1.38 0.73 0.53 0.01
Lactobacillus gallinarum NR_113261.1 1486 1 159 10.7 0.11 18.7 0.0 52242 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.11 0.31 2.89 0.0
Lacticaseibacillus rhamnosus NR_113332.1 1495 70 1495 100.0 15.7 35.3 25.2 47715 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 15.7 16.93 1.08 0.21
Limosilactobacillus fermentum NR_113335.1 1501 432 1501 100.0 84.29 31.0 7.92 1613 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 84.29 120.75 1.43 1.32
Lacticaseibacillus paracasei NR_113337.1 1495 11 1166 77.99 2.17 33.5 0.27 1597 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 2.17 2.49 1.15 0.03
Lactiplantibacillus plantarum NR_113338.1 1492 3259 1492 100.0 802.43 34.2 0.18 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 802.43 766.78 0.96 9.99
Lactobacillus delbrueckii NR_113387.1 1556 6 58 3.73 0.21 34.9 0.0 1050107 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.21 1.07 5.21 0.02
Lactobacillus acidophilus NR_113638.1 1489 40 1489 100.0 19.19 30.1 1.3 1579 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 19.19 7.55 0.39 0.12
Limosilactobacillus reuteri NR_113820.1 1501 1 547 36.44 0.36 16.0 1.0 1598 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 0.36 0.48 1.32 0.0
Enterococcus durans NR_113900.1 1485 1 246 16.57 0.17 22.2 0.0 53345 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 0.17 0.37 2.24 0.0
Enterococcus faecium NR_113903.1 1426 1 75 5.26 0.05 18.5 0.0 1352 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 0.05 0.22 4.24 0.0
Lactococcus lactis NR_113960.1 1472 2 1317 89.47 1.0 13.9 0.0 1358 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 1.0 0.46 0.46 0.01
Cupriavidus metallidurans NR_114128.1 1457 4 1426 97.87 2.05 27.7 4.5 119219 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus 2.05 1.13 0.55 0.01
Lactobacillus gallinarum NR_114722.1 1533 3 232 15.13 0.37 32.1 0.33 52242 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.37 0.92 2.45 0.01
Enterococcus faecium NR_114742.1 1533 16 752 49.05 4.57 35.2 1.69 1352 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 4.57 6.11 1.34 0.05
Enterococcus hirae NR_114743.1 1535 1 171 11.14 0.11 33.7 1.0 1354 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 0.11 0.31 2.82 0.0
Lacticaseibacillus casei NR_115322.1 1528 5 714 46.73 0.81 32.3 17.4 1582 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 0.81 0.95 1.18 0.02
Lacticaseibacillus casei NR_115534.1 1522 20 566 37.19 2.82 33.2 0.1 1423732 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 2.82 5.76 2.04 0.06
Lactiplantibacillus plantarum NR_115605.1 1519 5696 1517 99.87 2078.12 34.2 0.84 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 2078.12 762.25 0.37 17.46
Lactococcus cremoris NR_116443.1 1541 3 1498 97.21 1.55 29.3 0.33 542833 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 1.55 0.77 0.5 0.01
Lactobacillus helveticus NR_117060.1 1516 2 91 6.0 0.11 33.8 0.0 585520 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.11 0.44 4.06 0.01
Lactobacillus gallinarum NR_117061.1 1518 4 546 35.97 0.66 28.8 0.25 52242 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.66 1.1 1.67 0.01
Lactobacillus acidophilus NR_117062.1 1531 321 1512 98.76 135.67 33.6 8.99 1579 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 135.67 82.16 0.61 0.98
Lactobacillus crispatus NR_117063.1 1516 18 226 14.91 1.99 34.8 0.0 47770 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 1.99 5.18 2.61 0.06
Lactobacillus gasseri NR_117573.1 1529 6 669 43.75 1.04 23.9 0.0 1596 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 1.04 1.79 1.72 0.02
Lactobacillus acidophilus NR_117812.1 1453 32 1453 100.0 20.8 32.5 18.9 1579 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 20.8 3.37 0.16 0.1
Lactiplantibacillus plantarum NR_117813.1 1466 267 1466 100.0 154.83 27.1 9.24 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 154.83 30.02 0.19 0.82
Lacticaseibacillus paracasei NR_117987.1 1441 1 874 60.65 0.61 41.0 1.0 1597 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 0.61 0.49 0.81 0.0
Streptococcus thermophilus NR_118998.1 1540 438 853 55.39 76.89 35.5 0.33 1308 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus 76.89 142.64 1.86 1.34
Limosilactobacillus reuteri NR_119069.1 1571 9 679 43.22 1.26 34.6 1.78 557436 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 1.26 1.71 1.36 0.03
Lactobacillus crispatus NR_119274.1 1557 17 246 15.8 2.01 33.8 0.0 47770 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 2.01 5.02 2.5 0.05
Lactobacillus psittaci NR_125811.1 1421 1 201 14.14 0.14 8.79 1.0 116089 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.14 0.35 2.46 0.0
Lactiplantibacillus plajomi NR_136785.1 1492 2331 1492 100.0 294.51 30.7 1.24 1457217 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 294.51 572.3 1.94 7.15
Cupriavidus agavae NR_174193.1 1524 17 1494 98.03 11.3 36.0 36.8 1001822 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus 11.3 1.95 0.17 0.05
Lactiplantibacillus daoliensis NR_179285.1 1441 8 1436 99.65 4.96 16.5 1.25 2559916 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 4.96 1.48 0.3 0.02
Lactobacillus paragasseri NR_179379.1 1511 2 1406 93.05 1.3 38.7 3.5 2107999 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 1.3 0.59 0.45 0.01
Lacticaseibacillus chiayiensis NR_179712.1 1536 22 707 46.03 2.96 31.1 0.14 2100821 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 2.96 6.1 2.06 0.07
Limosilactobacillus balticus NR_181344.1 1569 12 1538 98.02 4.07 24.9 0.33 2759747 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 4.07 1.27 0.31 0.04
Limosilactobacillus agrestis NR_181345.1 1569 13 1535 97.83 2.84 34.6 1.77 2759748 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 2.84 1.79 0.63 0.04

Only taxa present in the abundance table above the abundance_threshold parameter appear in the table.

species reference ref length number of reads covbases % coverage mean depth mean baseq mean MAPQ taxid superkingdom kingdom phylum class order family genus mean sd depth CV % reads
Aquabacterium citratiphilum NR_024871.1 1418 9 1418 100.0 6.35 35.0 48.3 70582 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales unclassified Burkholderiales family Aquabacterium 6.35 1.17 0.18 0.1
Lactiplantibacillus paraplantarum NR_025447.1 1502 2 475 31.62 0.41 24.8 0.0 60520 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 0.41 0.66 1.6 0.02
Lacticaseibacillus paracasei NR_025880.1 1522 76 1512 99.34 22.36 33.1 2.39 1597 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 22.36 13.6 0.61 0.81
Ligilactobacillus salivarius NR_028725.2 1542 17 881 57.13 2.76 35.4 15.1 1624 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus 2.76 3.19 1.15 0.18
Lactiplantibacillus pentosus NR_029133.1 1519 41 1509 99.34 13.7 37.9 0.32 1589 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 13.7 4.88 0.36 0.44
Afipia broomeae NR_029200.1 1401 1 800 57.1 0.57 20.1 46.0 56946 Bacteria Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Afipia 0.57 0.49 0.87 0.01
Enterococcus durans NR_036922.1 1534 929 1513 98.63 260.83 33.0 7.87 53345 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 260.83 270.63 1.04 9.87
Enterococcus hirae NR_037082.1 1535 8 618 40.26 1.81 18.2 0.62 1354 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 1.81 2.71 1.5 0.09
Lacticaseibacillus zeae NR_037122.1 1522 20 360 23.65 2.79 35.3 0.05 57037 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 2.79 5.97 2.14 0.21
Lactococcus cremoris NR_040954.1 1499 154 1475 98.4 45.18 32.0 0.03 1359 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 45.18 48.79 1.08 1.64
Lactococcus lactis NR_040955.1 1499 363 1491 99.47 166.9 33.5 0.16 1358 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 166.91 39.74 0.24 3.86
Lactococcus lactis NR_040956.1 1499 345 1489 99.33 159.28 34.0 0.14 203404 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 159.28 37.93 0.24 3.67
Lacticaseibacillus paracasei NR_041054.1 1497 2 1252 83.63 1.03 15.5 0.5 113557 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 1.03 0.59 0.58 0.02
Lentilactobacillus sunkii NR_041656.1 1567 1 1484 94.7 0.95 33.0 0.0 481719 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus 0.95 0.22 0.24 0.01
Lentilactobacillus rapi NR_041659.1 1566 1 57 3.64 0.04 39.0 0.0 481723 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus 0.04 0.19 5.15 0.01
Lactobacillus crispatus NR_041800.1 1518 1 168 11.07 0.11 30.2 0.0 47770 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.11 0.31 2.83 0.01
Lacticaseibacillus casei NR_041893.1 1517 7 1517 100.0 4.92 30.6 11.9 1423732 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 4.92 0.98 0.2 0.07
Lactobacillus gasseri NR_041920.1 1572 11 1011 64.31 2.2 32.5 0.0 324831 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 2.2 2.2 1.0 0.12
Enterococcus faecium NR_042054.1 1551 53 1520 98.0 14.02 19.6 2.87 1352 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 14.02 12.03 0.86 0.56
Lactobacillus gallinarum NR_042111.1 1546 6 1511 97.74 4.0 26.8 3.67 52242 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 4.0 1.19 0.3 0.06
Lactiplantibacillus plantarum NR_042394.1 1474 5 1198 81.28 1.33 27.1 5.6 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 1.33 0.83 0.63 0.05
Lactobacillus helveticus NR_042439.1 1554 6 935 60.17 1.43 33.3 3.17 585520 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 1.43 1.8 1.26 0.06
Lactobacillus delbrueckii NR_042728.1 1505 1 204 13.55 0.14 11.6 1.0 888027 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.14 0.34 2.53 0.01
Streptococcus salivarius NR_042776.1 1546 11 1506 97.41 3.07 27.4 1.36 1304 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus 3.07 2.62 0.85 0.12
Streptococcus vestibularis NR_042777.1 1538 8 1118 72.69 1.58 20.1 0.0 889206 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus 1.58 1.62 1.03 0.09
Streptococcus thermophilus NR_042778.1 1539 254 1511 98.18 98.89 33.7 17.4 1308 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus 98.89 35.98 0.36 2.7
Lactobacillus acidophilus NR_043182.1 1478 58 1478 100.0 18.14 29.0 22.9 1579 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 18.14 13.83 0.76 0.62
Lacticaseibacillus rhamnosus NR_043408.1 1521 2 1439 94.61 1.07 11.5 1.0 47715 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 1.07 0.42 0.39 0.02
Lactobacillus taiwanensis NR_044507.1 1526 1 135 8.85 0.09 35.1 0.0 508451 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.09 0.28 3.21 0.01
Cupriavidus metallidurans NR_074704.1 1527 10 498 32.61 2.21 37.0 12.4 266264 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus 2.21 3.58 1.62 0.11
Lactobacillus delbrueckii NR_075019.1 1561 22 1526 97.76 6.1 34.1 8.5 390333 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 6.1 3.82 0.63 0.23
Enterococcus hirae NR_075022.1 1563 973 1519 97.18 149.5 33.4 2.25 768486 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 149.5 270.69 1.81 10.34
Limosilactobacillus reuteri NR_075036.1 1569 3 749 47.74 0.52 24.5 7.67 557436 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 0.52 0.58 1.11 0.03
Lactobacillus gasseri NR_075051.2 1573 10 1135 72.16 1.85 37.2 0.0 324831 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 1.85 2.02 1.09 0.11
Latilactobacillus sakei NR_104208.1 1414 1 124 8.77 0.09 28.2 60.0 214325 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Latilactobacillus 0.09 0.28 3.23 0.01
Lactiplantibacillus plantarum NR_104573.1 1527 22 843 55.21 4.8 34.1 0.0 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 4.8 7.04 1.47 0.23
Limosilactobacillus fermentum NR_104927.1 1502 69 1502 100.0 32.76 34.0 13.6 1613 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 32.76 15.04 0.46 0.73
Enterococcus faecium NR_112039.1 1523 8 1386 91.0 2.11 19.1 8.38 1352 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 2.11 1.95 0.92 0.09
Lactiplantibacillus plantarum NR_112690.1 1454 2 1428 98.21 1.91 27.3 22.5 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 1.91 0.34 0.18 0.02
Ligilactobacillus salivarius NR_112759.1 1486 5 1482 99.73 2.68 38.0 28.6 1624 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus 2.68 0.75 0.28 0.05
Enterococcus hirae NR_113256.1 1482 1 867 58.5 0.59 7.54 4.0 1354 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 0.59 0.49 0.84 0.01
Enterococcus durans NR_113257.1 1482 28 1469 99.12 11.32 24.2 0.21 53345 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 11.32 6.92 0.61 0.3
Lacticaseibacillus rhamnosus NR_113332.1 1495 86 1495 100.0 19.55 32.2 27.6 47715 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 19.55 22.76 1.16 0.91
Limosilactobacillus fermentum NR_113335.1 1501 68 1499 99.87 16.95 32.9 8.51 1613 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 16.95 17.51 1.03 0.72
Lacticaseibacillus paracasei NR_113337.1 1495 10 1478 98.86 2.29 31.8 0.2 1597 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 2.29 1.5 0.65 0.11
Lactiplantibacillus plantarum NR_113338.1 1492 14 1476 98.93 6.37 37.1 0.0 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 6.37 3.33 0.52 0.15
Lactobacillus delbrueckii NR_113387.1 1556 13 861 55.33 2.06 32.6 10.4 1050107 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 2.06 2.71 1.32 0.14
Lactobacillus delbrueckii NR_113639.1 1489 9 1489 100.0 7.25 26.5 2.89 1585 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 7.25 1.41 0.19 0.1
Enterococcus durans NR_113900.1 1485 38 1483 99.87 16.97 27.2 0.26 53345 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 16.97 9.76 0.58 0.4
Enterococcus faecium NR_113903.1 1426 42 1426 100.0 27.47 31.4 11.3 1352 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 27.47 10.22 0.37 0.45
Enterococcus faecium NR_113904.1 1485 75 1485 100.0 50.84 30.3 0.52 1352 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 50.84 16.15 0.32 0.8
Lactococcus cremoris NR_113925.1 1466 10 1465 99.93 6.0 29.8 6.0 1359 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 6.0 2.71 0.45 0.11
Lactococcus lactis NR_113958.1 1472 174 1472 100.0 67.32 31.3 0.01 203404 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 67.32 46.44 0.69 1.85
Lactococcus lactis NR_113960.1 1472 178 1472 100.0 81.45 32.1 0.02 1358 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 81.45 43.53 0.53 1.89
Enterococcus hirae NR_114452.1 1507 4 1247 82.75 1.64 16.5 0.25 1354 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 1.64 1.02 0.62 0.04
Enterococcus faecium NR_114742.1 1533 1727 1510 98.5 913.19 35.4 9.0 1352 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 913.19 332.23 0.36 18.35
Enterococcus hirae NR_114743.1 1535 8 1453 94.66 2.26 19.1 0.25 1354 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 2.26 2.19 0.97 0.09
Enterococcus hirae NR_114783.2 1550 6 887 57.23 1.36 17.4 4.5 1354 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 1.36 1.58 1.16 0.06
Lacticaseibacillus casei NR_115322.1 1528 16 1512 98.95 3.45 21.5 10.2 1582 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 3.45 4.01 1.16 0.17
Lacticaseibacillus casei NR_115534.1 1522 31 959 63.01 5.28 36.8 0.23 1423732 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 5.28 9.1 1.72 0.33
Lactiplantibacillus plantarum NR_115605.1 1519 56 1509 99.34 20.05 34.0 1.38 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 20.05 7.67 0.38 0.6
Enterococcus faecium NR_115764.1 1482 38 1481 99.93 17.98 25.5 1.63 1352 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 17.98 11.05 0.61 0.4
Lactococcus cremoris NR_116443.1 1541 166 1509 97.92 48.01 29.8 0.46 542833 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 48.01 35.03 0.73 1.76
Lactobacillus helveticus NR_117060.1 1516 3 223 14.71 0.38 33.4 0.33 585520 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.38 0.97 2.52 0.03
Lactobacillus gallinarum NR_117061.1 1518 1 234 15.42 0.15 30.2 0.0 52242 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.15 0.36 2.34 0.01
Lactobacillus acidophilus NR_117062.1 1531 53 1507 98.43 22.73 34.7 8.47 1579 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 22.73 14.54 0.64 0.56
Lactobacillus crispatus NR_117063.1 1516 2 299 19.72 0.24 31.5 0.0 47770 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.24 0.53 2.16 0.02
Lactobacillus delbrueckii NR_117074.1 1514 2 617 40.75 0.78 39.3 0.0 1584 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.78 0.96 1.22 0.02
Lactobacillus delbrueckii NR_117075.1 1475 1 1457 98.78 0.99 30.9 0.0 390333 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.99 0.11 0.11 0.01
Lactobacillus delbrueckii NR_117076.1 1445 1 176 12.18 0.12 16.6 1.0 888027 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.12 0.33 2.69 0.01
Enterococcus lactis NR_117562.1 1437 42 1432 99.65 29.92 28.5 8.12 357441 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 29.92 3.62 0.12 0.45
Lactobacillus gasseri NR_117573.1 1529 5 1479 96.73 1.38 32.7 0.2 1596 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 1.38 1.11 0.81 0.05
Lactobacillus acidophilus NR_117812.1 1453 2 1425 98.07 1.89 30.7 17.5 1579 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 1.89 0.37 0.2 0.02
Lactiplantibacillus plantarum NR_117813.1 1466 3 1433 97.75 2.17 26.2 5.67 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 2.17 0.88 0.4 0.03
Lacticaseibacillus paracasei NR_117987.1 1441 3 870 60.37 1.03 23.8 2.0 1597 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 1.03 0.98 0.95 0.03
Lactobacillus delbrueckii NR_118558.1 1423 1 1285 90.3 0.9 42.6 3.0 390333 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.9 0.3 0.33 0.01
Streptococcus thermophilus NR_118998.1 1540 65 1425 92.53 11.67 32.4 0.32 1308 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus 11.67 20.3 1.74 0.69
Limosilactobacillus reuteri NR_119069.1 1571 4 492 31.32 0.49 33.0 0.25 557436 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 0.49 0.85 1.74 0.04
Lactobacillus crispatus NR_119274.1 1557 3 178 11.43 0.29 37.1 0.0 47770 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.29 0.84 2.91 0.03
Lactiplantibacillus plajomi NR_136785.1 1492 15 488 32.71 1.91 30.9 4.4 1457217 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 1.91 3.75 1.96 0.16
Cupriavidus agavae NR_174193.1 1524 12 1490 97.77 7.62 32.3 40.2 1001822 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus 7.62 1.84 0.24 0.13
Lactobacillus paragasseri NR_179257.1 1495 1 457 30.57 0.31 12.3 5.0 2107999 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.31 0.46 1.51 0.01
Lactobacillus paragasseri NR_179379.1 1511 4 1510 99.93 2.65 30.7 2.75 2107999 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 2.65 0.65 0.25 0.04
Lacticaseibacillus chiayiensis NR_179712.1 1536 19 1519 98.89 4.57 32.4 0.53 2100821 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 4.57 4.25 0.93 0.2
Limosilactobacillus balticus NR_181344.1 1569 4 882 56.21 0.72 37.5 0.25 2759747 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 0.72 0.79 1.09 0.04
Limosilactobacillus agrestis NR_181345.1 1569 5 1042 66.41 0.92 28.0 0.4 2759748 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 0.92 0.83 0.9 0.05

Only taxa present in the abundance table above the abundance_threshold parameter appear in the table.

species reference ref length number of reads covbases % coverage mean depth mean baseq mean MAPQ taxid superkingdom kingdom phylum class order family genus mean sd depth CV % reads
Aquabacterium citratiphilum NR_024871.1 1418 3 1418 100.0 2.77 40.3 47.0 70582 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales unclassified Burkholderiales family Aquabacterium 2.77 0.43 0.15 0.01
Lactiplantibacillus paraplantarum NR_025447.1 1502 1 282 18.77 0.19 33.6 1.0 60520 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 0.19 0.39 2.08 0.0
Lacticaseibacillus paracasei NR_025880.1 1522 6672 1519 99.8 1836.89 35.1 3.13 1597 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 1836.89 2293.14 1.25 15.36
Ligilactobacillus salivarius NR_028725.2 1542 9 963 62.45 1.4 28.1 29.7 1624 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus 1.4 1.79 1.28 0.02
Lactiplantibacillus pentosus NR_029133.1 1519 23 1517 99.87 4.68 34.4 0.17 1589 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 4.68 3.68 0.79 0.05
Enterococcus durans NR_036922.1 1534 2 842 54.89 0.6 12.6 18.0 53345 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 0.6 0.58 0.97 0.0
Lacticaseibacillus zeae NR_037122.1 1522 2585 1519 99.8 397.66 31.1 0.07 57037 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 397.66 763.66 1.92 5.95
Bifidobacterium animalis NR_040867.1 1529 15 1498 97.97 5.21 30.2 43.2 302911 Bacteria Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium 5.21 2.69 0.52 0.03
Lactococcus cremoris NR_040954.1 1499 2 292 19.48 0.37 37.4 0.0 1359 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 0.37 0.77 2.06 0.0
Lactococcus lactis NR_040955.1 1499 3 687 45.83 0.61 28.6 0.0 1358 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 0.61 0.8 1.32 0.01
Lactococcus lactis NR_040956.1 1499 3 299 19.95 0.4 32.4 0.0 203404 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 0.4 0.88 2.23 0.01
Lacticaseibacillus paracasei NR_041054.1 1497 12 1461 97.6 4.84 13.5 4.33 113557 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 4.84 1.52 0.31 0.03
Lentilactobacillus buchneri NR_041293.1 1542 1 378 24.51 0.25 10.4 0.0 1581 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus 0.25 0.43 1.75 0.0
Lentilactobacillus kisonensis NR_041658.1 1565 2 1230 78.59 0.79 9.19 1.0 481722 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus 0.79 0.41 0.52 0.0
Lactobacillus crispatus NR_041800.1 1518 1 214 14.1 0.14 35.8 0.0 47770 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.14 0.35 2.47 0.0
Lacticaseibacillus casei NR_041893.1 1517 146 1517 100.0 40.88 17.4 0.52 1423732 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 40.88 29.5 0.72 0.34
Lactobacillus gasseri NR_041920.1 1572 6 1535 97.65 2.16 33.7 0.0 324831 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 2.16 0.8 0.37 0.01
Lactobacillus gallinarum NR_042111.1 1546 1 218 14.1 0.14 17.4 0.0 52242 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.14 0.35 2.47 0.0
Lactiplantibacillus plantarum NR_042394.1 1474 2 1414 95.93 1.3 15.3 0.5 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 1.3 0.54 0.42 0.0
Lactobacillus helveticus NR_042439.1 1554 4 482 31.02 0.63 29.3 2.25 585520 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.63 1.07 1.7 0.01
Latilactobacillus sakei NR_042443.1 1561 4 1445 92.57 1.51 17.7 0.75 214326 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Latilactobacillus 1.51 0.72 0.48 0.01
Lactobacillus delbrueckii NR_042728.1 1505 1 1251 83.12 0.83 8.16 42.0 888027 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.83 0.37 0.45 0.0
Streptococcus salivarius NR_042776.1 1546 3 1432 92.63 0.99 31.1 0.0 1304 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus 0.99 0.38 0.38 0.01
Streptococcus vestibularis NR_042777.1 1538 1 949 61.7 0.62 19.4 0.0 889206 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus 0.62 0.49 0.79 0.0
Streptococcus thermophilus NR_042778.1 1539 44 1514 98.38 17.96 35.2 9.64 1308 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus 17.96 6.59 0.37 0.1
Lactobacillus acidophilus NR_043182.1 1478 35 1472 99.59 11.12 26.6 18.8 1579 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 11.12 9.82 0.88 0.08
Lacticaseibacillus rhamnosus NR_043408.1 1521 621 1514 99.54 165.96 24.2 1.45 47715 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 165.96 85.29 0.51 1.43
Lactobacillus taiwanensis NR_044507.1 1526 3 198 12.98 0.34 24.7 0.33 508451 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.34 0.91 2.71 0.01
Cupriavidus metallidurans NR_074704.1 1527 7 783 51.28 1.31 35.3 6.14 266264 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus 1.31 1.93 1.47 0.02
Lactobacillus delbrueckii NR_075019.1 1561 2 600 38.44 0.58 36.6 3.5 390333 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.58 0.8 1.37 0.0
Enterococcus hirae NR_075022.1 1563 8 896 57.33 1.65 33.7 2.5 768486 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 1.65 2.45 1.49 0.02
Limosilactobacillus reuteri NR_075036.1 1569 11 1208 76.99 1.47 30.5 5.36 557436 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 1.47 1.41 0.96 0.03
Lactobacillus gasseri NR_075051.2 1573 4 426 27.08 0.39 37.0 0.0 324831 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.39 0.75 1.94 0.01
Lactiplantibacillus plantarum NR_104573.1 1527 29 1149 75.25 6.22 35.6 0.03 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 6.22 8.31 1.34 0.07
Limosilactobacillus fermentum NR_104927.1 1502 2 1496 99.6 1.13 41.3 22.5 1613 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 1.13 0.35 0.31 0.0
Ligilactobacillus salivarius NR_112759.1 1486 1 229 15.41 0.15 10.3 0.0 1624 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus 0.15 0.36 2.34 0.0
Lacticaseibacillus rhamnosus NR_113332.1 1495 26750 1495 100.0 9197.24 34.4 33.8 47715 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 9197.24 5565.89 0.61 61.57
Lacticaseibacillus casei NR_113333.1 1495 20 1327 88.76 4.93 17.3 1.5 1582 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 4.93 5.68 1.15 0.05
Lacticaseibacillus paracasei NR_113337.1 1495 145 1495 100.0 56.86 29.4 0.14 1597 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 56.86 48.58 0.85 0.33
Lactiplantibacillus plantarum NR_113338.1 1492 13 831 55.7 2.24 34.2 0.08 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 2.24 3.5 1.57 0.03
Lactobacillus delbrueckii NR_113387.1 1556 2 161 10.35 0.14 23.0 17.5 1050107 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.14 0.45 3.14 0.0
Lactobacillus acidophilus NR_113638.1 1489 3 538 36.13 0.76 36.0 2.67 1579 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.76 1.13 1.48 0.01
Lactobacillus helveticus NR_113719.1 1487 1 1003 67.45 0.67 35.0 1.0 1587 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.67 0.47 0.69 0.0
Lentilactobacillus parakefiri NR_113819.1 1500 1 336 22.4 0.22 12.7 1.0 152332 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus 0.22 0.42 1.86 0.0
Limosilactobacillus reuteri NR_113820.1 1501 1 812 54.1 0.54 39.0 21.0 1598 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 0.54 0.5 0.92 0.0
Lacticaseibacillus paracasei NR_113823.1 1497 14 1495 99.87 4.59 15.0 0.29 113557 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 4.59 1.7 0.37 0.03
Enterococcus durans NR_113900.1 1485 1 1305 87.88 0.88 30.0 1.0 53345 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 0.88 0.33 0.37 0.0
Lactococcus lactis NR_113958.1 1472 3 1472 100.0 2.11 39.2 0.0 203404 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 2.11 0.43 0.2 0.01
Lactococcus lactis NR_113960.1 1472 2 485 32.95 0.58 26.9 0.0 1358 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus 0.58 0.86 1.49 0.0
Enterococcus hirae NR_114452.1 1507 1 123 8.16 0.08 26.9 0.0 1354 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 0.08 0.27 3.35 0.0
Lactobacillus gallinarum NR_114722.1 1533 1 77 5.02 0.05 24.4 0.0 52242 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.05 0.22 4.35 0.0
Enterococcus faecium NR_114742.1 1533 11 1509 98.43 3.99 38.0 2.45 1352 Bacteria Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus 3.99 3.48 0.87 0.03
Lacticaseibacillus casei NR_115322.1 1528 192 1528 100.0 38.23 17.7 3.02 1582 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 38.23 32.11 0.84 0.44
Lacticaseibacillus casei NR_115534.1 1522 2503 1439 94.55 363.44 32.6 0.06 1423732 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 363.44 757.12 2.08 5.76
Lactiplantibacillus plantarum NR_115605.1 1519 26 1516 99.8 9.42 33.0 1.04 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 9.42 3.52 0.37 0.06
Ligilactobacillus salivarius NR_115884.1 1063 1 176 16.56 0.17 23.3 1.0 1624 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus 0.17 0.37 2.24 0.0
Lactobacillus gallinarum NR_117061.1 1518 2 663 43.68 0.69 16.1 0.0 52242 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.69 0.85 1.23 0.0
Lactobacillus acidophilus NR_117062.1 1531 43 1509 98.56 12.39 32.5 7.7 1579 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 12.39 12.11 0.98 0.1
Lactobacillus crispatus NR_117063.1 1516 4 285 18.8 0.5 30.5 0.25 47770 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.5 1.2 2.41 0.01
Lactobacillus gasseri NR_117573.1 1529 2 1390 90.91 1.12 14.7 0.0 1596 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 1.12 0.54 0.48 0.0
Lactobacillus acidophilus NR_117812.1 1453 1 160 11.01 0.11 36.8 0.0 1579 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.11 0.31 2.84 0.0
Lactiplantibacillus plantarum NR_117813.1 1466 2 1302 88.81 0.98 40.1 0.5 1590 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 0.98 0.45 0.46 0.0
Lacticaseibacillus paracasei NR_117987.1 1441 183 1405 97.5 98.65 23.8 11.3 1597 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 98.65 41.04 0.42 0.42
Streptococcus thermophilus NR_118998.1 1540 18 472 30.65 3.27 34.9 0.94 1308 Bacteria Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus 3.27 5.83 1.78 0.04
Limosilactobacillus reuteri NR_119069.1 1571 8 1449 92.23 1.67 25.1 0.5 557436 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 1.67 1.11 0.67 0.02
Lactobacillus crispatus NR_119274.1 1557 1 213 13.68 0.14 36.6 0.0 47770 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.14 0.34 2.51 0.0
Lactiplantibacillus plajomi NR_136785.1 1492 5 147 9.85 0.41 37.3 0.0 1457217 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus 0.41 1.31 3.21 0.01
Cupriavidus agavae NR_174193.1 1524 6 1490 97.77 4.01 30.4 21.2 1001822 Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus 4.01 1.29 0.32 0.01
Lactobacillus paragasseri NR_179379.1 1511 1 87 5.76 0.06 10.8 0.0 2107999 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus 0.06 0.23 4.05 0.0
Lacticaseibacillus chiayiensis NR_179712.1 1536 2408 1526 99.35 356.78 31.8 0.2 2100821 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus 356.78 698.28 1.96 5.54
Limosilactobacillus balticus NR_181344.1 1569 5 1175 74.89 0.89 35.9 0.6 2759747 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 0.89 0.67 0.76 0.01
Limosilactobacillus agrestis NR_181345.1 1569 11 1100 70.11 1.51 32.7 0.46 2759748 Bacteria Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus 1.51 1.64 1.09 0.03

Scatter plot showing, for each reference, the coverage (y-axis) and the number of mapped reads (x-axis). Hover the cursor over the points to show the reference name and species. Zoom into a specific region to distinguish between closest points.

Scatter plot showing, for each reference, the coverage (y-axis) and the number of mapped reads (x-axis). Hover the cursor over the points to show the reference name and species. Zoom into a specific region to distinguish between closest points.

Scatter plot showing, for each reference, the coverage (y-axis) and the number of mapped reads (x-axis). Hover the cursor over the points to show the reference name and species. Zoom into a specific region to distinguish between closest points.

Scatter plot showing, for each reference, the coverage (y-axis) and the number of mapped reads (x-axis). Hover the cursor over the points to show the reference name and species. Zoom into a specific region to distinguish between closest points.

Scatter plot showing, for each reference, the coverage (y-axis) and the number of mapped reads (x-axis). Hover the cursor over the points to show the reference name and species. Zoom into a specific region to distinguish between closest points.

Scatter plot showing, for each reference, the coverage (y-axis) and the number of mapped reads (x-axis). Hover the cursor over the points to show the reference name and species. Zoom into a specific region to distinguish between closest points.

Scatter plot showing, for each reference, the coverage (y-axis) and the number of mapped reads (x-axis). Hover the cursor over the points to show the reference name and species. Zoom into a specific region to distinguish between closest points.

Scatter plot showing, for each reference, the coverage (y-axis) and the number of mapped reads (x-axis). Hover the cursor over the points to show the reference name and species. Zoom into a specific region to distinguish between closest points.

Scatter plot showing, for each reference, the coverage (y-axis) and the number of mapped reads (x-axis). Hover the cursor over the points to show the reference name and species. Zoom into a specific region to distinguish between closest points.

Scatter plot showing, for each reference, the coverage (y-axis) and the number of mapped reads (x-axis). Hover the cursor over the points to show the reference name and species. Zoom into a specific region to distinguish between closest points.

Scatter plot showing, for each reference, the coverage (y-axis) and the number of mapped reads (x-axis). Hover the cursor over the points to show the reference name and species. Zoom into a specific region to distinguish between closest points.

Scatter plot showing, for each reference, the coverage (y-axis) and the number of mapped reads (x-axis). Hover the cursor over the points to show the reference name and species. Zoom into a specific region to distinguish between closest points.

Scatter plot showing, for each reference, the coverage (y-axis) and the number of mapped reads (x-axis). Hover the cursor over the points to show the reference name and species. Zoom into a specific region to distinguish between closest points.

To illustrate consistency of coverage between the reference sequences, each reference is divided into 100 evenly sized windows, and the average depth across all positions in the window is plotted in a cell in the heatmap. Only references with at least an averagesequencing depth > 1 across the entire reference sequence are included in the heatmap.

To illustrate consistency of coverage between the reference sequences, each reference is divided into 100 evenly sized windows, and the average depth across all positions in the window is plotted in a cell in the heatmap. Only references with at least an averagesequencing depth > 1 across the entire reference sequence are included in the heatmap.

To illustrate consistency of coverage between the reference sequences, each reference is divided into 100 evenly sized windows, and the average depth across all positions in the window is plotted in a cell in the heatmap. Only references with at least an averagesequencing depth > 1 across the entire reference sequence are included in the heatmap.

To illustrate consistency of coverage between the reference sequences, each reference is divided into 100 evenly sized windows, and the average depth across all positions in the window is plotted in a cell in the heatmap. Only references with at least an averagesequencing depth > 1 across the entire reference sequence are included in the heatmap.

To illustrate consistency of coverage between the reference sequences, each reference is divided into 100 evenly sized windows, and the average depth across all positions in the window is plotted in a cell in the heatmap. Only references with at least an averagesequencing depth > 1 across the entire reference sequence are included in the heatmap.

To illustrate consistency of coverage between the reference sequences, each reference is divided into 100 evenly sized windows, and the average depth across all positions in the window is plotted in a cell in the heatmap. Only references with at least an averagesequencing depth > 1 across the entire reference sequence are included in the heatmap.

To illustrate consistency of coverage between the reference sequences, each reference is divided into 100 evenly sized windows, and the average depth across all positions in the window is plotted in a cell in the heatmap. Only references with at least an averagesequencing depth > 1 across the entire reference sequence are included in the heatmap.

To illustrate consistency of coverage between the reference sequences, each reference is divided into 100 evenly sized windows, and the average depth across all positions in the window is plotted in a cell in the heatmap. Only references with at least an averagesequencing depth > 1 across the entire reference sequence are included in the heatmap.

To illustrate consistency of coverage between the reference sequences, each reference is divided into 100 evenly sized windows, and the average depth across all positions in the window is plotted in a cell in the heatmap. Only references with at least an averagesequencing depth > 1 across the entire reference sequence are included in the heatmap.

To illustrate consistency of coverage between the reference sequences, each reference is divided into 100 evenly sized windows, and the average depth across all positions in the window is plotted in a cell in the heatmap. Only references with at least an averagesequencing depth > 1 across the entire reference sequence are included in the heatmap.

To illustrate consistency of coverage between the reference sequences, each reference is divided into 100 evenly sized windows, and the average depth across all positions in the window is plotted in a cell in the heatmap. Only references with at least an averagesequencing depth > 1 across the entire reference sequence are included in the heatmap.

To illustrate consistency of coverage between the reference sequences, each reference is divided into 100 evenly sized windows, and the average depth across all positions in the window is plotted in a cell in the heatmap. Only references with at least an averagesequencing depth > 1 across the entire reference sequence are included in the heatmap.

To illustrate consistency of coverage between the reference sequences, each reference is divided into 100 evenly sized windows, and the average depth across all positions in the window is plotted in a cell in the heatmap. Only references with at least an averagesequencing depth > 1 across the entire reference sequence are included in the heatmap.

Software versions

Name Version
pysam 0.23.0
pandas 2.2.3
fastcat 0.20.0
minimap2 2.28-r1209
samtools 1.21
taxonkit v0.19.0
Kraken 2.1.3

Workflow parameters

Key Value
fastq None
bam /home/artem/katya_demux2/katya_demux
sample None
sample_sheet None
classifier minimap2
exclude_host None
max_len 2000
min_len 1200
min_read_qual None
threads 128
server_threads 2
kraken_clients 2
taxonomy None
reference None
ref2taxid None
database None
taxonomic_rank S
minimap2filter None
minimap2exclude False
keep_bam False
minimap2_by_reference True
min_percent_identity 95
min_ref_coverage 90
store_dir store_dir
out_dir /home/artem/katya_demux2/16s
include_read_assignments False
igv False
output_unclassified False
bracken_length None
bracken_threshold 10
port 8080
host localhost
external_kraken2 False
kraken2_memory_mapping False
kraken2_confidence 0
batch_size 0
real_time False
read_limit None
database_set ncbi_16s_18s
database_sets {'ncbi_16s_18s': {'reference': 'https://ont-exd-int-s3-euwst1-epi2me-labs.s3.amazonaws.com/wf-metagenomics/ncbi_16s_18s/ncbi_targeted_loci_16s_18s.fna', 'database': 'https://ont-exd-int-s3-euwst1-epi2me-labs.s3.amazonaws.com/wf-metagenomics/ncbi_16s_18s/ncbi_targeted_loci_kraken2.tar.gz', 'ref2taxid': 'https://ont-exd-int-s3-euwst1-epi2me-labs.s3.amazonaws.com/wf-metagenomics/ncbi_16s_18s/ref2taxid.targloci.tsv', 'taxonomy': 'https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump_archive/new_taxdump_2025-01-01.zip'}, 'ncbi_16s_18s_28s_ITS': {'reference': 'https://ont-exd-int-s3-euwst1-epi2me-labs.s3.amazonaws.com/wf-metagenomics/ncbi_16s_18s_28s_ITS/ncbi_16s_18s_28s_ITS.fna', 'database': 'https://ont-exd-int-s3-euwst1-epi2me-labs.s3.amazonaws.com/wf-metagenomics/ncbi_16s_18s_28s_ITS/ncbi_16s_18s_28s_ITS_kraken2.tar.gz', 'ref2taxid': 'https://ont-exd-int-s3-euwst1-epi2me-labs.s3.amazonaws.com/wf-metagenomics/ncbi_16s_18s_28s_ITS/ref2taxid.ncbi_16s_18s_28s_ITS.tsv', 'taxonomy': 'https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump_archive/new_taxdump_2025-01-01.zip'}, 'SILVA_138_1': {'database': None}}
abundance_threshold 1
n_taxa_barplot 9
amr False
amr_db resfinder
amr_minid 80
amr_mincov 80
analyse_unclassified False