2.25 4063 4063 U 0 unclassified 97.75 176381 373 R 1 root 97.54 176004 1 R1 131567 cellular organisms 97.51 175958 74 D 2 Bacteria 97.38 175717 67 D1 1783272 Terrabacteria group 64.14 115729 10 P 1239 Bacillota 64.13 115713 72 C 91061 Bacilli 64.06 115586 430 O 186826 Lactobacillales 40.69 73414 514 F 33958 Lactobacillaceae 26.80 48353 274 G 1578 Lactobacillus 26.56 47920 47631 S 1579 Lactobacillus acidophilus 0.09 162 162 S1 272621 Lactobacillus acidophilus NCFM 0.07 127 127 S1 1314884 Lactobacillus acidophilus La-14 0.06 107 84 S 1584 Lactobacillus delbrueckii 0.00 8 8 S1 29397 Lactobacillus delbrueckii subsp. lactis 0.00 6 4 S1 1585 Lactobacillus delbrueckii subsp. bulgaricus 0.00 1 1 S2 321956 Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 0.00 1 1 S2 390333 Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002 0.00 5 3 S1 83684 Lactobacillus delbrueckii subsp. delbrueckii 0.00 2 2 S2 1423823 Lactobacillus delbrueckii subsp. delbrueckii DSM 20074 = JCM 1012 0.00 3 0 S1 1537158 Lactobacillus delbrueckii subsp. jakobsenii 0.00 3 3 S2 1217420 Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 0.00 1 1 S1 249265 Lactobacillus delbrueckii subsp. indicus 0.02 32 29 S 1587 Lactobacillus helveticus 0.00 2 2 S1 405566 Lactobacillus helveticus DPC 4571 0.00 1 1 S1 880633 Lactobacillus helveticus R0052 0.00 8 4 S 1604 Lactobacillus amylovorus 0.00 3 3 S1 1423723 Lactobacillus amylovorus DSM 20531 0.00 1 1 S1 695562 Lactobacillus amylovorus GRL1118 0.00 3 3 S 33959 Lactobacillus johnsonii 0.00 3 3 S 267818 Lactobacillus kefiranofaciens 0.00 2 2 S 83683 Lactobacillus amylolyticus 0.00 1 1 G1 2620435 unclassified Lactobacillus 0.00 1 1 S 508451 Lactobacillus taiwanensis 0.00 1 1 S 303541 Lactobacillus apis 0.00 1 1 S 47770 Lactobacillus crispatus 9.54 17209 2001 G 2759736 Lacticaseibacillus 5.32 9598 9396 S 1582 Lacticaseibacillus casei 0.11 202 202 S1 1423732 Lacticaseibacillus casei DSM 20011 = JCM 1134 = ATCC 393 3.04 5477 5461 S 47715 Lacticaseibacillus rhamnosus 0.00 7 7 S1 1088720 Lacticaseibacillus rhamnosus ATCC 8530 0.00 6 6 S1 568704 Lacticaseibacillus rhamnosus Lc 705 0.00 2 2 S1 568703 Lacticaseibacillus rhamnosus GG 0.00 1 1 S1 1318634 Lacticaseibacillus rhamnosus LOCK908 0.06 102 90 S 1597 Lacticaseibacillus paracasei 0.00 7 7 S1 113557 Lacticaseibacillus paracasei subsp. tolerans 0.00 3 3 S1 321967 Lacticaseibacillus paracasei ATCC 334 0.00 2 2 S1 47714 Lacticaseibacillus paracasei subsp. paracasei 0.01 13 13 S 57037 Lacticaseibacillus zeae 0.01 10 10 S 2100821 Lacticaseibacillus chiayiensis 0.00 8 1 G1 2759744 unclassified Lacticaseibacillus 0.00 7 7 S 3068305 Lacticaseibacillus sp. NCIMB 15471 3.97 7162 630 G 2767842 Lactiplantibacillus 3.62 6524 6426 S 1590 Lactiplantibacillus plantarum 0.04 75 75 S1 337330 Lactiplantibacillus plantarum subsp. plantarum 0.00 7 7 S1 220668 Lactiplantibacillus plantarum WCFS1 0.00 4 4 S1 1284663 Lactiplantibacillus plantarum ZJ316 0.00 4 4 S1 1327988 Lactiplantibacillus plantarum 16 0.00 4 4 S1 1385856 Lactiplantibacillus plantarum 2025 0.00 3 3 S1 644042 Lactiplantibacillus plantarum JDM1 0.00 1 1 S1 889932 Lactiplantibacillus plantarum ST-III 0.00 3 1 S 1589 Lactiplantibacillus pentosus 0.00 2 2 S1 1136177 Lactiplantibacillus pentosus KCA1 0.00 3 3 S 60520 Lactiplantibacillus paraplantarum 0.00 2 2 S 271881 Lactiplantibacillus argentoratensis 0.04 75 0 G 2767887 Ligilactobacillus 0.04 74 74 S 1624 Ligilactobacillus salivarius 0.00 1 1 S 89059 Ligilactobacillus acidipiscis 0.03 63 0 G 2742598 Limosilactobacillus 0.02 38 34 S 97478 Limosilactobacillus mucosae 0.00 4 4 S1 1130798 Limosilactobacillus mucosae LM1 0.01 19 17 S 1613 Limosilactobacillus fermentum 0.00 1 1 S1 767453 Limosilactobacillus fermentum F-6 0.00 1 1 S1 1381124 Limosilactobacillus fermentum 3872 0.00 4 4 S 227942 Limosilactobacillus gastricus 0.00 2 2 S 1598 Limosilactobacillus reuteri 0.01 13 0 G 2767893 Lentilactobacillus 0.01 13 13 S 1581 Lentilactobacillus buchneri 0.00 6 0 G 1243 Leuconostoc 0.00 3 3 S 2766470 Leuconostoc falkenbergense 0.00 1 1 S 1245 Leuconostoc mesenteroides 0.00 1 1 S 33964 Leuconostoc citreum 0.00 1 1 S 33968 Leuconostoc pseudomesenteroides 0.00 5 1 G 1253 Pediococcus 0.00 4 4 S 51663 Pediococcus damnosus 0.00 5 0 G 46255 Weissella 0.00 3 3 S 1583 Weissella confusa 0.00 1 1 S 1249 Weissella paramesenteroides 0.00 1 1 S 1631871 Weissella jogaejeotgali 0.00 3 0 G 2767886 Levilactobacillus 0.00 3 3 S 1580 Levilactobacillus brevis 0.00 2 1 G 2767888 Liquorilactobacillus 0.00 1 0 S 82688 Liquorilactobacillus nagelii 0.00 1 1 S1 1122150 Liquorilactobacillus nagelii DSM 13675 0.00 2 0 G 2767885 Latilactobacillus 0.00 1 1 S 1599 Latilactobacillus sakei 0.00 1 1 S 28038 Latilactobacillus curvatus 0.00 1 0 G 2767892 Secundilactobacillus 0.00 1 1 S 240427 Secundilactobacillus paracollinoides 0.00 1 0 G 2767879 Companilactobacillus 0.00 1 0 S 1602 Companilactobacillus alimentarius 0.00 1 1 S1 1423720 Companilactobacillus alimentarius DSM 20249 23.11 41702 189 F 1300 Streptococcaceae 13.06 23567 857 G 1301 Streptococcus 12.56 22658 22275 S 1308 Streptococcus thermophilus 0.05 85 85 S1 1435981 Streptococcus thermophilus 1F8CT 0.04 80 80 S1 1433289 Streptococcus thermophilus M17PTZA496 0.04 64 64 S1 1435974 Streptococcus thermophilus TH982 0.03 55 55 S1 1435972 Streptococcus thermophilus TH985 0.02 32 32 S1 1051074 Streptococcus thermophilus JIM 8232 0.01 15 15 S1 1433288 Streptococcus thermophilus MTH17CL396 0.01 12 12 S1 1423145 Streptococcus thermophilus TH1436 0.01 11 11 S1 1408178 Streptococcus thermophilus ASCC 1275 0.00 7 7 S1 1436725 Streptococcus thermophilus TH1477 0.00 6 6 S1 264199 Streptococcus thermophilus LMG 18311 0.00 4 4 S1 322159 Streptococcus thermophilus LMD-9 0.00 4 4 S1 767463 Streptococcus thermophilus ND03 0.00 4 4 S1 1415776 Streptococcus thermophilus TH1435 0.00 3 3 S1 299768 Streptococcus thermophilus CNRZ1066 0.00 1 1 S1 1187956 Streptococcus thermophilus MN-ZLW-002 0.01 10 9 S 1304 Streptococcus salivarius 0.00 1 1 S1 1046629 Streptococcus salivarius 57.I 0.00 5 5 S 197614 Streptococcus pasteurianus 0.00 5 3 S 1307 Streptococcus suis 0.00 2 2 S1 1276647 Streptococcus suis TL13 0.00 5 5 S 1501662 Streptococcus parasuis 0.00 5 5 S 1314 Streptococcus pyogenes 0.00 3 3 S 1335 Streptococcus equinus 0.00 2 0 G1 119603 Streptococcus dysgalactiae group 0.00 2 2 S 1334 Streptococcus dysgalactiae 0.00 2 0 S 1311 Streptococcus agalactiae 0.00 1 1 S1 1203670 Streptococcus agalactiae GD201008-001 0.00 1 1 S1 1309807 Streptococcus agalactiae ILRI005 0.00 2 2 S 68892 Streptococcus infantis 0.00 2 2 S 28037 Streptococcus mitis 0.00 2 2 S 1348 Streptococcus parauberis 0.00 2 2 S 1343 Streptococcus vestibularis 0.00 1 1 S 1303 Streptococcus oralis 0.00 1 0 G1 671232 Streptococcus anginosus group 0.00 1 1 S 1328 Streptococcus anginosus 0.00 1 1 S 1349 Streptococcus uberis 0.00 1 0 G1 2608887 unclassified Streptococcus 0.00 1 1 S 2664091 Streptococcus sp. zg-86 0.00 1 1 S 1326 Streptococcus acidominimus 0.00 1 1 S 1305 Streptococcus sanguinis 0.00 1 1 S 1313 Streptococcus pneumoniae 9.95 17946 2585 G 1357 Lactococcus 8.44 15222 11012 S 1358 Lactococcus lactis 2.33 4210 3903 S1 1360 Lactococcus lactis subsp. lactis 0.11 195 195 S2 1046624 Lactococcus lactis subsp. lactis IO-1 0.04 65 65 S2 44688 Lactococcus lactis subsp. lactis bv. diacetylactis 0.01 24 24 S2 1117941 Lactococcus lactis subsp. lactis NCDO 2118 0.00 9 9 S2 929102 Lactococcus lactis subsp. lactis CV56 0.00 8 8 S2 272623 Lactococcus lactis subsp. lactis Il1403 0.00 6 6 S2 684738 Lactococcus lactis subsp. lactis KF147 0.04 81 73 S 1359 Lactococcus cremoris 0.00 8 0 S1 2816960 Lactococcus cremoris subsp. cremoris 0.00 4 4 S2 1449093 Lactococcus cremoris subsp. cremoris IBB477 0.00 2 2 S2 1104322 Lactococcus cremoris subsp. cremoris A76 0.00 1 1 S2 1111678 Lactococcus cremoris subsp. cremoris UC509.9 0.00 1 1 S2 1295826 Lactococcus cremoris subsp. cremoris KW2 0.02 35 35 S 1151742 Lactococcus taiwanensis 0.01 18 0 G1 2643510 unclassified Lactococcus 0.01 18 18 S 2879149 Lactococcus sp. NH2-7C 0.00 2 2 S 1363 Lactococcus garvieae 0.00 2 2 S 2592653 Lactococcus protaetiae 0.00 1 1 S 1366 Lactococcus raffinolactis 0.02 39 0 F 81852 Enterococcaceae 0.02 38 17 G 1350 Enterococcus 0.01 14 14 S 1351 Enterococcus faecalis 0.00 2 2 S 1352 Enterococcus faecium 0.00 2 2 S 37734 Enterococcus casseliflavus 0.00 2 2 S 357441 Enterococcus lactis 0.00 1 0 G1 2608891 unclassified Enterococcus 0.00 1 1 S 2060307 Enterococcus sp. FDAARGOS_375 0.00 1 1 G 2737 Vagococcus 0.00 1 0 F 186828 Carnobacteriaceae 0.00 1 0 G 2747 Carnobacterium 0.00 1 1 S 174587 Carnobacterium viridans 0.03 55 0 O 1385 Bacillales 0.02 42 0 F 186820 Listeriaceae 0.02 42 0 G 1637 Listeria 0.02 37 37 S 529731 Listeria marthii 0.00 5 5 S 1639 Listeria monocytogenes 0.00 7 0 F 186817 Bacillaceae 0.00 4 1 G 1386 Bacillus 0.00 2 0 G1 653685 Bacillus subtilis group 0.00 1 0 G2 653388 Bacillus mojavensis subgroup 0.00 1 1 S 260554 Bacillus halotolerans 0.00 1 0 G2 1938374 Bacillus amyloliquefaciens group 0.00 1 0 S 492670 Bacillus velezensis 0.00 1 1 S1 1458206 Bacillus velezensis NJN-6 0.00 1 0 G1 86661 Bacillus cereus group 0.00 1 1 S 1428 Bacillus thuringiensis 0.00 1 0 G 2837504 Heyndrickxia 0.00 1 1 S 1398 Heyndrickxia coagulans 0.00 1 0 G 1906945 Parageobacillus 0.00 1 0 S 1426 Parageobacillus thermoglucosidasius 0.00 1 1 S1 1136178 Parageobacillus thermoglucosidasius TNO-09.020 0.00 1 0 G 1276290 Caldibacillus 0.00 1 1 S 35841 Caldibacillus thermoamylovorans 0.00 2 0 F 90964 Staphylococcaceae 0.00 2 0 G 1279 Staphylococcus 0.00 1 1 S 1280 Staphylococcus aureus 0.00 1 0 G1 91994 unclassified Staphylococcus 0.00 1 1 S 2025492 Staphylococcus sp. M0911 0.00 2 0 F 186818 Planococcaceae 0.00 1 0 G 1569 Sporosarcina 0.00 1 1 S 633404 Sporosarcina thermotolerans 0.00 1 0 G 648800 Solibacillus 0.00 1 0 S 76853 Solibacillus silvestris 0.00 1 1 S1 1002809 Solibacillus silvestris StLB046 0.00 2 0 F 186822 Paenibacillaceae 0.00 1 0 G 44249 Paenibacillus 0.00 1 0 G1 185978 unclassified Paenibacillus 0.00 1 1 S 3039392 Paenibacillus sp. RC67 0.00 1 0 F1 85151 Aneurinibacillus group 0.00 1 1 G 55079 Aneurinibacillus 0.00 6 0 C 186801 Clostridia 0.00 6 0 O 186802 Eubacteriales 0.00 4 0 F 31979 Clostridiaceae 0.00 4 1 G 1485 Clostridium 0.00 2 1 S 1502 Clostridium perfringens 0.00 1 1 S1 107819 Clostridium perfringens D 0.00 1 1 S 1520 Clostridium beijerinckii 0.00 2 0 F 186804 Peptostreptococcaceae 0.00 2 0 G 1870884 Clostridioides 0.00 1 1 S 1496 Clostridioides difficile 0.00 1 1 G1 2635829 unclassified Clostridioides 33.21 59919 3 P 201174 Actinomycetota 33.20 59916 19 C 1760 Actinomycetes 33.17 59856 0 O 85004 Bifidobacteriales 33.17 59856 15 F 31953 Bifidobacteriaceae 33.16 59841 8472 G 1678 Bifidobacterium 18.89 34091 32685 S 216816 Bifidobacterium longum 0.43 770 695 S1 1679 Bifidobacterium longum subsp. longum 0.02 37 37 S2 722911 Bifidobacterium longum subsp. longum F8 0.01 17 17 S2 1300227 Bifidobacterium longum subsp. longum GT15 0.01 13 13 S2 1035817 Bifidobacterium longum subsp. longum KACC 91563 0.00 6 6 S2 890402 Bifidobacterium longum subsp. longum BBMN68 0.00 1 1 S2 565042 Bifidobacterium longum subsp. longum JCM 1217 0.00 1 1 S2 759350 Bifidobacterium longum subsp. longum JDM301 0.31 562 511 S1 1682 Bifidobacterium longum subsp. infantis 0.03 50 50 S2 565040 Bifidobacterium longum subsp. infantis 157F 0.00 1 1 S2 391904 Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 0.01 27 27 S1 205913 Bifidobacterium longum DJO10A 0.01 27 27 S1 1931217 Bifidobacterium longum subsp. suillum 0.01 19 19 S1 1322347 Bifidobacterium longum E18 0.00 1 1 S1 206672 Bifidobacterium longum NCC2705 9.25 16687 16062 S 1685 Bifidobacterium breve 0.10 188 188 S1 866777 Bifidobacterium breve ACS-071-V-Sch8b 0.08 153 153 S1 1385940 Bifidobacterium breve JCM 7019 0.08 149 149 S1 936351 Bifidobacterium breve S27 0.05 87 87 S1 1385938 Bifidobacterium breve 12L 0.02 34 34 S1 1385939 Bifidobacterium breve JCM 7017 0.01 11 11 S1 1385942 Bifidobacterium breve 689b 0.00 3 3 S1 1385941 Bifidobacterium breve NCFB 2258 0.24 431 402 S 1681 Bifidobacterium bifidum 0.01 16 16 S1 883062 Bifidobacterium bifidum S17 0.01 13 13 S1 702459 Bifidobacterium bifidum PRL2010 0.02 32 20 S 28025 Bifidobacterium animalis 0.01 10 3 S1 302911 Bifidobacterium animalis subsp. lactis 0.00 4 4 S2 1167629 Bifidobacterium animalis subsp. lactis ATCC 27673 0.00 1 1 S2 1168290 Bifidobacterium animalis subsp. lactis B420 0.00 1 1 S2 1281781 Bifidobacterium animalis subsp. lactis Bl12 0.00 1 1 S2 1316911 Bifidobacterium animalis subsp. lactis KLDS2.0603 0.00 2 2 S1 302912 Bifidobacterium animalis subsp. animalis 0.01 16 6 G1 2608897 unclassified Bifidobacterium 0.00 3 3 S 2983220 Bifidobacterium sp. ESL0728 0.00 2 2 S 2983214 Bifidobacterium sp. ESL0690 0.00 1 1 S 2922858 Bifidobacterium sp. TKU 0.00 1 1 S 2922859 Bifidobacterium sp. SKU 0.00 1 1 S 2983212 Bifidobacterium sp. ESL0682 0.00 1 1 S 2983229 Bifidobacterium sp. ESL0769 0.00 1 1 S 2983230 Bifidobacterium sp. ESL0775 0.01 13 13 S 1680 Bifidobacterium adolescentis 0.01 13 9 S 1686 Bifidobacterium catenulatum 0.00 3 3 S1 1447716 Bifidobacterium catenulatum PV20-2 0.00 1 1 S1 630129 Bifidobacterium catenulatum subsp. kashiwanohense 0.01 12 0 S 158787 Bifidobacterium scardovii 0.01 12 12 S1 1150461 Bifidobacterium scardovii JCM 12489 = DSM 13734 0.01 11 11 S 1689 Bifidobacterium dentium 0.01 10 10 S 2020965 Bifidobacterium imperatoris 0.00 9 6 S 1694 Bifidobacterium pseudolongum 0.00 2 0 S1 1690 Bifidobacterium pseudolongum subsp. globosum 0.00 2 2 S2 1410605 Bifidobacterium pseudolongum subsp. globosum DSM 20092 0.00 1 1 S1 1447715 Bifidobacterium pseudolongum PV8-2 0.00 7 7 S 28026 Bifidobacterium pseudocatenulatum 0.00 7 7 S 1683 Bifidobacterium angulatum 0.00 6 0 S 78448 Bifidobacterium pullorum 0.00 6 6 S1 78344 Bifidobacterium pullorum subsp. gallinarum 0.00 5 5 S 1684 Bifidobacterium asteroides 0.00 5 5 S 35760 Bifidobacterium choerinum 0.00 4 0 S 638619 Bifidobacterium actinocoloniiforme 0.00 4 4 S1 1437605 Bifidobacterium actinocoloniiforme DSM 22766 0.00 3 3 S 1765219 Bifidobacterium eulemuris 0.00 2 2 S 77635 Bifidobacterium subtile 0.00 2 2 S 762210 Bifidobacterium saguini 0.00 1 1 S 1603886 Bifidobacterium lemurum 0.00 1 1 S 33905 Bifidobacterium thermophilum 0.00 1 1 S 1687 Bifidobacterium coryneforme 0.01 18 0 O 85007 Mycobacteriales 0.01 16 0 F 85025 Nocardiaceae 0.01 16 0 G 1827 Rhodococcus 0.01 13 5 S 1828 Rhodococcus fascians 0.00 7 7 S1 1051973 Rhodococcus fascians D188 0.00 1 1 S1 1443893 Rhodococcus fascians A21d2 0.00 3 0 G1 192944 unclassified Rhodococcus (in: high G+C Gram-positive bacteria) 0.00 3 3 S 3047468 Rhodococcus sp. AH-ZY2 0.00 1 0 F 1653 Corynebacteriaceae 0.00 1 0 G 1716 Corynebacterium 0.00 1 0 S 234828 Corynebacterium caspium 0.00 1 1 S1 1121355 Corynebacterium caspium DSM 44850 0.00 1 0 F 1762 Mycobacteriaceae 0.00 1 0 G 670516 Mycobacteroides 0.00 1 0 S 36809 Mycobacteroides abscessus 0.00 1 1 S1 1185650 Mycobacteroides abscessus subsp. abscessus 0.00 9 0 O 85009 Propionibacteriales 0.00 9 0 F 31957 Propionibacteriaceae 0.00 9 1 G 1912216 Cutibacterium 0.00 8 8 S 1747 Cutibacterium acnes 0.00 8 0 O 85006 Micrococcales 0.00 4 1 F 85023 Microbacteriaceae 0.00 3 1 G 33882 Microbacterium 0.00 2 1 G1 2609290 unclassified Microbacterium 0.00 1 1 S 2567934 Microbacterium sp. 4R-513 0.00 3 0 F 1268 Micrococcaceae 0.00 2 0 G 32207 Rothia 0.00 2 2 S 37923 Rothia kristinae 0.00 1 1 G 1269 Micrococcus 0.00 1 0 F 85019 Brevibacteriaceae 0.00 1 1 G 1696 Brevibacterium 0.00 3 0 O 85011 Kitasatosporales 0.00 3 0 F 2062 Streptomycetaceae 0.00 3 0 G 1883 Streptomyces 0.00 1 1 S 83291 Streptomyces armeniacus 0.00 1 1 S 2174846 Streptomyces tirandamycinicus 0.00 1 0 G1 2593676 unclassified Streptomyces 0.00 1 1 S 1725411 Streptomyces sp. CdTB01 0.00 1 0 O 85008 Micromonosporales 0.00 1 0 F 28056 Micromonosporaceae 0.00 1 0 G 1873 Micromonospora 0.00 1 0 G1 2617518 unclassified Micromonospora 0.00 1 1 S 3061626 Micromonospora sp. HUAS LYJ1 0.00 1 0 O 2037 Actinomycetales 0.00 1 0 F 2049 Actinomycetaceae 0.00 1 0 G 1654 Actinomyces 0.00 1 1 S 544580 Actinomyces oris 0.00 1 0 O 85012 Streptosporangiales 0.00 1 0 F 83676 Nocardiopsaceae 0.00 1 0 G 2013 Nocardiopsis 0.00 1 1 S 163604 Nocardiopsis exhalans 0.00 2 0 P 544448 Mycoplasmatota 0.00 2 0 C 31969 Mollicutes 0.00 1 0 O 2085 Mycoplasmatales 0.00 1 0 F 2092 Mycoplasmataceae 0.00 1 0 G 295595 Candidatus Hepatoplasma 0.00 1 0 S 295596 Candidatus Hepatoplasma crinochetorum 0.00 1 1 S1 1427984 Candidatus Hepatoplasma crinochetorum Av 0.00 1 0 O 186329 Acholeplasmatales 0.00 1 0 F 2146 Acholeplasmataceae 0.00 1 0 G 33926 Candidatus Phytoplasma 0.00 1 0 G1 85630 16SrX (Apple proliferation group) 0.00 1 1 S 37692 Candidatus Phytoplasma mali 0.09 165 7 P 1224 Pseudomonadota 0.04 80 2 C 28216 Betaproteobacteria 0.04 77 6 O 80840 Burkholderiales 0.03 53 2 F 119060 Burkholderiaceae 0.02 43 11 G 106589 Cupriavidus 0.01 17 17 S 119219 Cupriavidus metallidurans 0.00 9 9 S 82633 Cupriavidus pauculus 0.00 3 0 G1 2640874 unclassified Cupriavidus 0.00 3 3 S 2839983 Cupriavidus sp. EM10 0.00 1 1 S 96344 Cupriavidus oxalaticus 0.00 1 1 S 106590 Cupriavidus necator 0.00 1 1 S 248026 Cupriavidus pinatubonensis 0.00 4 0 G 48736 Ralstonia 0.00 3 3 S 190721 Ralstonia insidiosa 0.00 1 1 S 2842456 Ralstonia wenshanensis 0.00 2 0 G 1822464 Paraburkholderia 0.00 1 1 S 311231 Paraburkholderia ginsengisoli 0.00 1 0 S 36873 Paraburkholderia xenovorans 0.00 1 1 S1 266265 Paraburkholderia xenovorans LB400 0.00 1 0 G 32008 Burkholderia 0.00 1 1 G1 87882 Burkholderia cepacia complex 0.00 1 1 G 1827195 Caballeronia 0.01 10 1 F 80864 Comamonadaceae 0.00 2 0 G 47420 Hydrogenophaga 0.00 2 0 G1 2610897 unclassified Hydrogenophaga 0.00 1 1 S 2565558 Hydrogenophaga sp. PAMC20947 0.00 1 1 S 2806262 Hydrogenophaga sp. YM1 0.00 2 2 G 80865 Delftia 0.00 1 0 G 12916 Acidovorax 0.00 1 1 G1 2684926 unclassified Acidovorax 0.00 1 0 G 364316 Verminephrobacter 0.00 1 0 S 364317 Verminephrobacter eiseniae 0.00 1 1 S1 391735 Verminephrobacter eiseniae EF01-2 0.00 1 0 G 352450 Simplicispira 0.00 1 1 S 2109915 Simplicispira suum 0.00 1 1 G 238749 Diaphorobacter 0.00 1 1 G 283 Comamonas 0.00 4 0 O1 224471 Burkholderiales genera incertae sedis 0.00 3 0 G 92793 Aquabacterium 0.00 3 3 S 1296669 Aquabacterium olei 0.00 1 0 G 318147 Paucibacter 0.00 1 0 G1 2642959 unclassified Paucibacter 0.00 1 1 S 3019553 Paucibacter sp. S2-9 0.00 2 1 F 75682 Oxalobacteraceae 0.00 1 1 G 29580 Janthinobacterium 0.00 2 0 F 2975441 Sphaerotilaceae 0.00 1 0 G 36862 Ideonella 0.00 1 1 S 36863 Ideonella dechloratans 0.00 1 0 G 391952 Aquincola 0.00 1 1 S 391953 Aquincola tertiaricarbonis 0.00 1 0 O 206351 Neisseriales 0.00 1 0 F 1499392 Chromobacteriaceae 0.00 1 0 G 400060 Paludibacterium 0.00 1 1 S 1225769 Paludibacterium paludis 0.04 68 3 C 28211 Alphaproteobacteria 0.03 53 1 O 356 Hyphomicrobiales 0.02 30 1 F 41294 Nitrobacteraceae 0.01 23 6 G 374 Bradyrhizobium 0.01 14 2 G1 2631580 unclassified Bradyrhizobium 0.00 3 3 S 2057741 Bradyrhizobium sp. SK17 0.00 2 2 S 2782659 Bradyrhizobium sp. 191 0.00 1 1 S 3049772 Bradyrhizobium sp. NP1 0.00 1 1 S 3039159 Bradyrhizobium sp. CB82 0.00 1 1 S 288000 Bradyrhizobium sp. BTAi1 0.00 1 1 S 439387 Bradyrhizobium sp. CIAT3101 0.00 1 1 S 3039154 Bradyrhizobium sp. CB1717 0.00 1 1 S 858422 Bradyrhizobium sp. CCBAU 051011 0.00 1 1 S 2976823 Bradyrhizobium sp. CB1024 0.00 1 1 S 29448 Bradyrhizobium elkanii 0.00 1 1 S 1404367 Bradyrhizobium symbiodeficiens 0.00 1 1 S 255045 Bradyrhizobium canariense 0.00 3 0 G 1073 Rhodopseudomonas 0.00 2 1 S 1076 Rhodopseudomonas palustris 0.00 1 1 S1 316058 Rhodopseudomonas palustris HaA2 0.00 1 0 G1 2638247 unclassified Rhodopseudomonas 0.00 1 1 S 340268 Rhodopseudomonas sp. SK50-23 0.00 2 0 G 1395974 Tardiphaga 0.00 2 1 G1 2631404 unclassified Tardiphaga 0.00 1 1 S 1404741 Tardiphaga sp. 37S4 0.00 1 0 G 1033 Afipia 0.00 1 1 S 290 [Pseudomonas] carboxydohydrogena 0.01 21 0 F 69277 Phyllobacteriaceae 0.01 21 0 G 68287 Mesorhizobium 0.01 19 19 S 2725666 Mesorhizobium terrae 0.00 2 0 G1 325217 unclassified Mesorhizobium 0.00 1 1 S 2589903 Mesorhizobium sp. B2-8-5 0.00 1 1 S 2493680 Mesorhizobium sp. M1A.F.Ca.IN.022.06.1.1 0.00 1 0 F 119045 Methylobacteriaceae 0.00 1 0 G 2282523 Methylorubrum 0.00 1 0 G1 2648467 unclassified Methylorubrum 0.00 1 1 S 2897334 Methylorubrum sp. B1-46 0.01 11 0 O 204457 Sphingomonadales 0.01 10 0 F 41297 Sphingomonadaceae 0.01 10 0 G 13687 Sphingomonas 0.00 8 0 G1 196159 unclassified Sphingomonas 0.00 7 7 S 3014784 Sphingomonas sp. NIBR02145 0.00 1 1 S 399176 Sphingomonas sp. R1 0.00 1 1 S 1813879 Sphingomonas panacisoli 0.00 1 1 S 152682 Sphingomonas melonis 0.00 1 0 F 335929 Erythrobacteraceae 0.00 1 0 G 1295327 Croceicoccus 0.00 1 1 G1 2629967 unclassified Croceicoccus 0.00 1 0 O 204441 Rhodospirillales 0.00 1 0 F 2066434 Geminicoccaceae 0.00 1 0 G 171436 Tistrella 0.00 1 0 S 171437 Tistrella mobilis 0.00 1 1 S1 1110502 Tistrella mobilis KA081020-065 0.01 10 0 C 1236 Gammaproteobacteria 0.00 4 0 O 91347 Enterobacterales 0.00 4 0 F 543 Enterobacteriaceae 0.00 2 0 G 158483 Cedecea 0.00 2 2 S 158822 Cedecea neteri 0.00 1 0 F1 2890311 Klebsiella/Raoultella group 0.00 1 0 G 570 Klebsiella 0.00 1 1 S 573 Klebsiella pneumoniae 0.00 1 0 G 561 Escherichia 0.00 1 1 S 562 Escherichia coli 0.00 2 0 O 2887326 Moraxellales 0.00 2 0 F 468 Moraxellaceae 0.00 2 0 G 469 Acinetobacter 0.00 2 2 S 40215 Acinetobacter junii 0.00 1 0 O 72274 Pseudomonadales 0.00 1 0 F 135621 Pseudomonadaceae 0.00 1 0 G 286 Pseudomonas 0.00 1 0 G1 136849 Pseudomonas syringae group 0.00 1 0 S 251699 Pseudomonas syringae group genomosp. 7 0.00 1 1 S1 251654 Pseudomonas syringae pv. helianthi 0.00 1 0 C1 118884 Gammaproteobacteria incertae sedis 0.00 1 0 C2 32036 sulfur-oxidizing symbionts 0.00 1 0 S 113267 Bathymodiolus septemdierum thioautotrophic gill symbiont 0.00 1 1 S1 1303921 endosymbiont of Bathymodiolus septemdierum str. Myojin knoll 0.00 1 0 O 135622 Alteromonadales 0.00 1 0 F 267890 Shewanellaceae 0.00 1 0 G 22 Shewanella 0.00 1 0 G1 196818 unclassified Shewanella 0.00 1 1 S 94122 Shewanella sp. ANA-3 0.00 1 0 O 135625 Pasteurellales 0.00 1 0 F 712 Pasteurellaceae 0.00 1 0 G 745 Pasteurella 0.00 1 0 S 747 Pasteurella multocida 0.00 1 0 S1 44283 Pasteurella multocida subsp. multocida 0.00 1 1 S2 1147130 Pasteurella multocida subsp. multocida str. HB03 0.00 1 0 D1 2323 Bacteria incertae sedis 0.00 1 0 D2 1783234 Bacteria candidate phyla 0.00 1 0 P 67810 Candidatus Bipolaricaulota 0.00 1 0 G 2250122 Candidatus Bipolaricaulis 0.00 1 1 S 2026885 Candidatus Bipolaricaulis anaerobius 0.00 1 0 D1 1783257 PVC group 0.00 1 0 P 204428 Chlamydiota 0.00 1 0 C 204429 Chlamydiia 0.00 1 0 O 51291 Chlamydiales 0.00 1 0 F 809 Chlamydiaceae 0.00 1 0 F1 1113537 Chlamydia/Chlamydophila group 0.00 1 0 G 810 Chlamydia 0.00 1 1 S 813 Chlamydia trachomatis 0.02 44 0 D 2759 Eukaryota 0.02 44 0 D1 33154 Opisthokonta 0.02 44 0 K 33208 Metazoa 0.02 44 0 K1 6072 Eumetazoa 0.02 44 0 K2 33213 Bilateria 0.02 44 0 K3 33511 Deuterostomia 0.02 44 0 P 7711 Chordata 0.02 44 0 P1 89593 Craniata 0.02 44 0 P2 7742 Vertebrata 0.02 44 0 P3 7776 Gnathostomata 0.02 44 0 P4 117570 Teleostomi 0.02 44 0 P5 117571 Euteleostomi 0.02 44 0 P6 8287 Sarcopterygii 0.02 44 0 P7 1338369 Dipnotetrapodomorpha 0.02 44 0 P8 32523 Tetrapoda 0.02 44 0 P9 32524 Amniota 0.02 44 0 C 40674 Mammalia 0.02 44 0 C1 32525 Theria 0.02 44 0 C2 9347 Eutheria 0.02 44 0 C3 1437010 Boreoeutheria 0.02 44 0 C4 314146 Euarchontoglires 0.02 44 0 O 9443 Primates 0.02 44 0 O1 376913 Haplorrhini 0.02 44 0 O2 314293 Simiiformes 0.02 44 0 O3 9526 Catarrhini 0.02 44 0 O4 314295 Hominoidea 0.02 44 0 F 9604 Hominidae 0.02 44 0 F1 207598 Homininae 0.02 44 0 G 9605 Homo 0.02 44 44 S 9606 Homo sapiens 0.00 1 0 D 2157 Archaea 0.00 1 0 P 28890 Euryarchaeota 0.00 1 0 P1 2290931 Stenosarchaea group 0.00 1 0 C 183963 Halobacteria 0.00 1 0 O 2235 Halobacteriales 0.00 1 0 F 1963268 Haloarculaceae 0.00 1 0 G 63743 Natronomonas 0.00 1 1 S 2961939 Natronomonas marina 0.00 4 0 D 10239 Viruses 0.00 4 0 D1 2731341 Duplodnaviria 0.00 4 0 K 2731360 Heunggongvirae 0.00 4 0 P 2731618 Uroviricota 0.00 4 0 C 2731619 Caudoviricetes 0.00 2 0 C1 2788787 unclassified Caudoviricetes 0.00 2 2 S 35241 Lactococcus phage Tuc2009 0.00 1 1 G 2843470 Vedamuthuvirus 0.00 1 0 G 2843349 Ashduovirus 0.00 1 0 S 2845128 Ashduovirus A2 0.00 1 1 S1 51369 Lactobacillus phage A2