Read summary
Samples summary
Lineages
Sunburst
This visualization can be useful to interactively explore the taxonomic composition of the sample. It shows hierarchical data: each layer represents a taxonomic rank. The color indicates the abundance of that taxon in comparison with the total number of reads. Zooming into an specific taxon is possible by clicking on it.
Taxonomy
Barplot of the 9 most abundant taxa at the phylum rank. Any remaining taxa have been collapsed under the 'Other' category to facilitate the visualization. The y-axis indicates the relative abundance of each taxon in percentages for each sample.
Barplot of the 9 most abundant taxa at the class rank. Any remaining taxa have been collapsed under the 'Other' category to facilitate the visualization. The y-axis indicates the relative abundance of each taxon in percentages for each sample.
Barplot of the 9 most abundant taxa at the order rank. Any remaining taxa have been collapsed under the 'Other' category to facilitate the visualization. The y-axis indicates the relative abundance of each taxon in percentages for each sample.
Barplot of the 9 most abundant taxa at the family rank. Any remaining taxa have been collapsed under the 'Other' category to facilitate the visualization. The y-axis indicates the relative abundance of each taxon in percentages for each sample.
Barplot of the 9 most abundant taxa at the genus rank. Any remaining taxa have been collapsed under the 'Other' category to facilitate the visualization. The y-axis indicates the relative abundance of each taxon in percentages for each sample.
Barplot of the 9 most abundant taxa at the species rank. Any remaining taxa have been collapsed under the 'Other' category to facilitate the visualization. The y-axis indicates the relative abundance of each taxon in percentages for each sample.
Abundances
Abundance table for the phylum rank.
Only taxa whose global abundance are above the
abundance_threshold parameter will appear in the table.
| phylum | bc06 | total | superkingdom | kingdom | tax |
|---|---|---|---|---|---|
| Euryarchaeota | 1 | 1 | Archaea | Archaea_none | Archaea;Archaea_none;Euryarchaeota |
| Actinomycetota | 59923 | 59923 | Bacteria | Bacteria_none | Bacteria;Bacteria_none;Actinomycetota |
| Bacillota | 116192 | 116192 | Bacteria | Bacteria_none | Bacteria;Bacteria_none;Bacillota |
| Candidatus Bipolaricaulota | 1 | 1 | Bacteria | Bacteria_none | Bacteria;Bacteria_none;Candidatus Bipolaricaulota |
| Chlamydiota | 1 | 1 | Bacteria | Bacteria_none | Bacteria;Bacteria_none;Chlamydiota |
| Mycoplasmatota | 2 | 2 | Bacteria | Bacteria_none | Bacteria;Bacteria_none;Mycoplasmatota |
| Pseudomonadota | 139 | 139 | Bacteria | Bacteria_none | Bacteria;Bacteria_none;Pseudomonadota |
| Chordata | 44 | 44 | Eukaryota | Metazoa | Eukaryota;Metazoa;Chordata |
| Unknown | 4063 | 4063 | Unclassified | Unknown | Unclassified;Unknown;Unknown |
| Uroviricota | 3 | 3 | Viruses | Heunggongvirae | Viruses;Heunggongvirae;Uroviricota |
Abundance table for the class rank.
Only taxa whose global abundance are above the
abundance_threshold parameter will appear in the table.
| class | bc06 | total | superkingdom | kingdom | phylum | tax |
|---|---|---|---|---|---|---|
| Halobacteria | 1 | 1 | Archaea | Archaea_none | Euryarchaeota | Archaea;Archaea_none;Euryarchaeota;Halobacteria |
| Actinomycetes | 59923 | 59923 | Bacteria | Bacteria_none | Actinomycetota | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes |
| Bacilli | 116188 | 116188 | Bacteria | Bacteria_none | Bacillota | Bacteria;Bacteria_none;Bacillota;Bacilli |
| Clostridia | 4 | 4 | Bacteria | Bacteria_none | Bacillota | Bacteria;Bacteria_none;Bacillota;Clostridia |
| Candidatus Bipolaricaulota_Incertae_sedis | 1 | 1 | Bacteria | Bacteria_none | Candidatus Bipolaricaulota | Bacteria;Bacteria_none;Candidatus Bipolaricaulota;Candidatus Bipolaricaulota_Incertae_sedis |
| Chlamydiia | 1 | 1 | Bacteria | Bacteria_none | Chlamydiota | Bacteria;Bacteria_none;Chlamydiota;Chlamydiia |
| Mollicutes | 2 | 2 | Bacteria | Bacteria_none | Mycoplasmatota | Bacteria;Bacteria_none;Mycoplasmatota;Mollicutes |
| Alphaproteobacteria | 58 | 58 | Bacteria | Bacteria_none | Pseudomonadota | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria |
| Betaproteobacteria | 67 | 67 | Bacteria | Bacteria_none | Pseudomonadota | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria |
| Gammaproteobacteria | 14 | 14 | Bacteria | Bacteria_none | Pseudomonadota | Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria |
| Mammalia | 44 | 44 | Eukaryota | Metazoa | Chordata | Eukaryota;Metazoa;Chordata;Mammalia |
| Unknown | 4063 | 4063 | Unclassified | Unknown | Unknown | Unclassified;Unknown;Unknown;Unknown |
| Caudoviricetes | 3 | 3 | Viruses | Heunggongvirae | Uroviricota | Viruses;Heunggongvirae;Uroviricota;Caudoviricetes |
Abundance table for the order rank.
Only taxa whose global abundance are above the
abundance_threshold parameter will appear in the table.
| order | bc06 | total | superkingdom | kingdom | phylum | class | tax |
|---|---|---|---|---|---|---|---|
| Halobacteriales | 1 | 1 | Archaea | Archaea_none | Euryarchaeota | Halobacteria | Archaea;Archaea_none;Euryarchaeota;Halobacteria;Halobacteriales |
| Actinomycetales | 1 | 1 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Actinomycetales |
| Bifidobacteriales | 59888 | 59888 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales |
| Kitasatosporales | 3 | 3 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Kitasatosporales |
| Micrococcales | 6 | 6 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Micrococcales |
| Mycobacteriales | 15 | 15 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Mycobacteriales |
| Propionibacteriales | 9 | 9 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Propionibacteriales |
| Streptosporangiales | 1 | 1 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Streptosporangiales |
| Bacillales | 53 | 53 | Bacteria | Bacteria_none | Bacillota | Bacilli | Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales |
| Lactobacillales | 116135 | 116135 | Bacteria | Bacteria_none | Bacillota | Bacilli | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales |
| Eubacteriales | 4 | 4 | Bacteria | Bacteria_none | Bacillota | Clostridia | Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales |
| Candidatus Bipolaricaulota_Incertae_sedis_Incertae_sedis | 1 | 1 | Bacteria | Bacteria_none | Candidatus Bipolaricaulota | Candidatus Bipolaricaulota_Incertae_sedis | Bacteria;Bacteria_none;Candidatus Bipolaricaulota;Candidatus Bipolaricaulota_Incertae_sedis;Candidatus Bipolaricaulota_Incertae_sedis_Incertae_sedis |
| Chlamydiales | 1 | 1 | Bacteria | Bacteria_none | Chlamydiota | Chlamydiia | Bacteria;Bacteria_none;Chlamydiota;Chlamydiia;Chlamydiales |
| Acholeplasmatales | 1 | 1 | Bacteria | Bacteria_none | Mycoplasmatota | Mollicutes | Bacteria;Bacteria_none;Mycoplasmatota;Mollicutes;Acholeplasmatales |
| Mycoplasmatales | 1 | 1 | Bacteria | Bacteria_none | Mycoplasmatota | Mollicutes | Bacteria;Bacteria_none;Mycoplasmatota;Mollicutes;Mycoplasmatales |
| Hyphomicrobiales | 47 | 47 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales |
| Rhodospirillales | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Rhodospirillales |
| Sphingomonadales | 10 | 10 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Sphingomonadales |
| Burkholderiales | 66 | 66 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales |
| Neisseriales | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Neisseriales |
| Alteromonadales | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Gammaproteobacteria | Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Alteromonadales |
| Enterobacterales | 7 | 7 | Bacteria | Bacteria_none | Pseudomonadota | Gammaproteobacteria | Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Enterobacterales |
| Gammaproteobacteria_Incertae_sedis | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Gammaproteobacteria | Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Gammaproteobacteria_Incertae_sedis |
| Moraxellales | 2 | 2 | Bacteria | Bacteria_none | Pseudomonadota | Gammaproteobacteria | Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Moraxellales |
| Pasteurellales | 2 | 2 | Bacteria | Bacteria_none | Pseudomonadota | Gammaproteobacteria | Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Pasteurellales |
| Pseudomonadales | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Gammaproteobacteria | Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Pseudomonadales |
| Primates | 44 | 44 | Eukaryota | Metazoa | Chordata | Mammalia | Eukaryota;Metazoa;Chordata;Mammalia;Primates |
| Unknown | 4063 | 4063 | Unclassified | Unknown | Unknown | Unknown | Unclassified;Unknown;Unknown;Unknown;Unknown |
| Caudoviricetes_Incertae_sedis | 3 | 3 | Viruses | Heunggongvirae | Uroviricota | Caudoviricetes | Viruses;Heunggongvirae;Uroviricota;Caudoviricetes;Caudoviricetes_Incertae_sedis |
Abundance table for the family rank.
Only taxa whose global abundance are above the
abundance_threshold parameter will appear in the table.
| family | bc06 | total | superkingdom | kingdom | phylum | class | order | tax |
|---|---|---|---|---|---|---|---|---|
| Haloarculaceae | 1 | 1 | Archaea | Archaea_none | Euryarchaeota | Halobacteria | Halobacteriales | Archaea;Archaea_none;Euryarchaeota;Halobacteria;Halobacteriales;Haloarculaceae |
| Actinomycetaceae | 1 | 1 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Actinomycetales | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae |
| Bifidobacteriaceae | 59888 | 59888 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bifidobacteriales | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae |
| Streptomycetaceae | 3 | 3 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Kitasatosporales | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Kitasatosporales;Streptomycetaceae |
| Microbacteriaceae | 4 | 4 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Micrococcales | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Micrococcales;Microbacteriaceae |
| Micrococcaceae | 2 | 2 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Micrococcales | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Micrococcales;Micrococcaceae |
| Corynebacteriaceae | 1 | 1 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Mycobacteriales | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Mycobacteriales;Corynebacteriaceae |
| Mycobacteriaceae | 1 | 1 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Mycobacteriales | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae |
| Nocardiaceae | 13 | 13 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Mycobacteriales | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Mycobacteriales;Nocardiaceae |
| Propionibacteriaceae | 9 | 9 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Propionibacteriales | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae |
| Nocardiopsaceae | 1 | 1 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Streptosporangiales | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Streptosporangiales;Nocardiopsaceae |
| Bacillaceae | 7 | 7 | Bacteria | Bacteria_none | Bacillota | Bacilli | Bacillales | Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Bacillaceae |
| Listeriaceae | 42 | 42 | Bacteria | Bacteria_none | Bacillota | Bacilli | Bacillales | Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Listeriaceae |
| Planococcaceae | 2 | 2 | Bacteria | Bacteria_none | Bacillota | Bacilli | Bacillales | Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Planococcaceae |
| Staphylococcaceae | 2 | 2 | Bacteria | Bacteria_none | Bacillota | Bacilli | Bacillales | Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Staphylococcaceae |
| Carnobacteriaceae | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae |
| Enterococcaceae | 36 | 36 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Enterococcaceae |
| Lactobacillaceae | 73758 | 73758 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae |
| Streptococcaceae | 42340 | 42340 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae |
| Clostridiaceae | 3 | 3 | Bacteria | Bacteria_none | Bacillota | Clostridia | Eubacteriales | Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Clostridiaceae |
| Peptostreptococcaceae | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Clostridia | Eubacteriales | Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Peptostreptococcaceae |
| Candidatus Bipolaricaulota_Incertae_sedis_Incertae_sedis_Incertae_sedis | 1 | 1 | Bacteria | Bacteria_none | Candidatus Bipolaricaulota | Candidatus Bipolaricaulota_Incertae_sedis | Candidatus Bipolaricaulota_Incertae_sedis_Incertae_sedis | Bacteria;Bacteria_none;Candidatus Bipolaricaulota;Candidatus Bipolaricaulota_Incertae_sedis;Candidatus Bipolaricaulota_Incertae_sedis_Incertae_sedis;Candidatus Bipolaricaulota_Incertae_sedis_Incertae_sedis_Incertae_sedis |
| Chlamydiaceae | 1 | 1 | Bacteria | Bacteria_none | Chlamydiota | Chlamydiia | Chlamydiales | Bacteria;Bacteria_none;Chlamydiota;Chlamydiia;Chlamydiales;Chlamydiaceae |
| Acholeplasmataceae | 1 | 1 | Bacteria | Bacteria_none | Mycoplasmatota | Mollicutes | Acholeplasmatales | Bacteria;Bacteria_none;Mycoplasmatota;Mollicutes;Acholeplasmatales;Acholeplasmataceae |
| Mycoplasmataceae | 1 | 1 | Bacteria | Bacteria_none | Mycoplasmatota | Mollicutes | Mycoplasmatales | Bacteria;Bacteria_none;Mycoplasmatota;Mollicutes;Mycoplasmatales;Mycoplasmataceae |
| Methylobacteriaceae | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Hyphomicrobiales | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Methylobacteriaceae |
| Nitrobacteraceae | 24 | 24 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Hyphomicrobiales | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Nitrobacteraceae |
| Phyllobacteriaceae | 22 | 22 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Hyphomicrobiales | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Phyllobacteriaceae |
| Geminicoccaceae | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Rhodospirillales | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Rhodospirillales;Geminicoccaceae |
| Sphingomonadaceae | 10 | 10 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Sphingomonadales | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae |
| Burkholderiaceae | 57 | 57 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Burkholderiaceae |
| Burkholderiales_Incertae_sedis | 3 | 3 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Burkholderiales_Incertae_sedis |
| Comamonadaceae | 4 | 4 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Comamonadaceae |
| Sphaerotilaceae | 2 | 2 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Sphaerotilaceae |
| Chromobacteriaceae | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Neisseriales | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Neisseriales;Chromobacteriaceae |
| Shewanellaceae | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Gammaproteobacteria | Alteromonadales | Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Alteromonadales;Shewanellaceae |
| Enterobacteriaceae | 7 | 7 | Bacteria | Bacteria_none | Pseudomonadota | Gammaproteobacteria | Enterobacterales | Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae |
| Gammaproteobacteria_Incertae_sedis_Incertae_sedis | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Gammaproteobacteria | Gammaproteobacteria_Incertae_sedis | Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Gammaproteobacteria_Incertae_sedis;Gammaproteobacteria_Incertae_sedis_Incertae_sedis |
| Moraxellaceae | 2 | 2 | Bacteria | Bacteria_none | Pseudomonadota | Gammaproteobacteria | Moraxellales | Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Moraxellales;Moraxellaceae |
| Pasteurellaceae | 2 | 2 | Bacteria | Bacteria_none | Pseudomonadota | Gammaproteobacteria | Pasteurellales | Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Pasteurellales;Pasteurellaceae |
| Pseudomonadaceae | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Gammaproteobacteria | Pseudomonadales | Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae |
| Hominidae | 44 | 44 | Eukaryota | Metazoa | Chordata | Mammalia | Primates | Eukaryota;Metazoa;Chordata;Mammalia;Primates;Hominidae |
| Unknown | 4063 | 4063 | Unclassified | Unknown | Unknown | Unknown | Unknown | Unclassified;Unknown;Unknown;Unknown;Unknown;Unknown |
| Caudoviricetes_Incertae_sedis_Incertae_sedis | 3 | 3 | Viruses | Heunggongvirae | Uroviricota | Caudoviricetes | Caudoviricetes_Incertae_sedis | Viruses;Heunggongvirae;Uroviricota;Caudoviricetes;Caudoviricetes_Incertae_sedis;Caudoviricetes_Incertae_sedis_Incertae_sedis |
Abundance table for the genus rank.
Only taxa whose global abundance are above the
abundance_threshold parameter will appear in the table.
| genus | bc06 | total | superkingdom | kingdom | phylum | class | order | family | tax |
|---|---|---|---|---|---|---|---|---|---|
| Natronomonas | 1 | 1 | Archaea | Archaea_none | Euryarchaeota | Halobacteria | Halobacteriales | Haloarculaceae | Archaea;Archaea_none;Euryarchaeota;Halobacteria;Halobacteriales;Haloarculaceae;Natronomonas |
| Actinomyces | 1 | 1 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Actinomycetales | Actinomycetaceae | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Actinomyces |
| Bifidobacterium | 59888 | 59888 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bifidobacteriales | Bifidobacteriaceae | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium |
| Streptomyces | 3 | 3 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Kitasatosporales | Streptomycetaceae | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Kitasatosporales;Streptomycetaceae;Streptomyces |
| Microbacterium | 4 | 4 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Micrococcales | Microbacteriaceae | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Micrococcales;Microbacteriaceae;Microbacterium |
| Rothia | 2 | 2 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Micrococcales | Micrococcaceae | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Micrococcales;Micrococcaceae;Rothia |
| Corynebacterium | 1 | 1 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Mycobacteriales | Corynebacteriaceae | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Mycobacteriales;Corynebacteriaceae;Corynebacterium |
| Mycobacteroides | 1 | 1 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Mycobacteriales | Mycobacteriaceae | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Mycobacteroides |
| Rhodococcus | 13 | 13 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Mycobacteriales | Nocardiaceae | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Mycobacteriales;Nocardiaceae;Rhodococcus |
| Cutibacterium | 9 | 9 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Propionibacteriales | Propionibacteriaceae | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Cutibacterium |
| Nocardiopsis | 1 | 1 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Streptosporangiales | Nocardiopsaceae | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Streptosporangiales;Nocardiopsaceae;Nocardiopsis |
| Bacillus | 4 | 4 | Bacteria | Bacteria_none | Bacillota | Bacilli | Bacillales | Bacillaceae | Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus |
| Caldibacillus | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Bacillales | Bacillaceae | Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Bacillaceae;Caldibacillus |
| Parageobacillus | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Bacillales | Bacillaceae | Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Bacillaceae;Parageobacillus |
| Weizmannia | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Bacillales | Bacillaceae | Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Bacillaceae;Weizmannia |
| Listeria | 42 | 42 | Bacteria | Bacteria_none | Bacillota | Bacilli | Bacillales | Listeriaceae | Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Listeriaceae;Listeria |
| Solibacillus | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Bacillales | Planococcaceae | Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Planococcaceae;Solibacillus |
| Sporosarcina | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Bacillales | Planococcaceae | Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Planococcaceae;Sporosarcina |
| Staphylococcus | 2 | 2 | Bacteria | Bacteria_none | Bacillota | Bacilli | Bacillales | Staphylococcaceae | Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Staphylococcaceae;Staphylococcus |
| Carnobacterium | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Carnobacteriaceae | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Carnobacterium |
| Enterococcus | 36 | 36 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Enterococcaceae | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus |
| Companilactobacillus | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus |
| Lacticaseibacillus | 17785 | 17785 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus |
| Lactiplantibacillus | 7309 | 7309 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus |
| Lactobacillus | 48488 | 48488 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus |
| Latilactobacillus | 2 | 2 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus |
| Lentilactobacillus | 13 | 13 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus |
| Leuconostoc | 6 | 6 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc |
| Levilactobacillus | 3 | 3 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus |
| Ligilactobacillus | 75 | 75 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Ligilactobacillus |
| Limosilactobacillus | 63 | 63 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus |
| Liquorilactobacillus | 2 | 2 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus |
| Pediococcus | 5 | 5 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus |
| Secundilactobacillus | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Secundilactobacillus |
| Weissella | 5 | 5 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella |
| Lactococcus | 18606 | 18606 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus |
| Streptococcus | 23734 | 23734 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus |
| Clostridium | 3 | 3 | Bacteria | Bacteria_none | Bacillota | Clostridia | Eubacteriales | Clostridiaceae | Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium |
| Clostridioides | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Clostridia | Eubacteriales | Peptostreptococcaceae | Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Peptostreptococcaceae;Clostridioides |
| Candidatus Bipolaricaulis | 1 | 1 | Bacteria | Bacteria_none | Candidatus Bipolaricaulota | Candidatus Bipolaricaulota_Incertae_sedis | Candidatus Bipolaricaulota_Incertae_sedis_Incertae_sedis | Candidatus Bipolaricaulota_Incertae_sedis_Incertae_sedis_Incertae_sedis | Bacteria;Bacteria_none;Candidatus Bipolaricaulota;Candidatus Bipolaricaulota_Incertae_sedis;Candidatus Bipolaricaulota_Incertae_sedis_Incertae_sedis;Candidatus Bipolaricaulota_Incertae_sedis_Incertae_sedis_Incertae_sedis;Candidatus Bipolaricaulis |
| Chlamydia | 1 | 1 | Bacteria | Bacteria_none | Chlamydiota | Chlamydiia | Chlamydiales | Chlamydiaceae | Bacteria;Bacteria_none;Chlamydiota;Chlamydiia;Chlamydiales;Chlamydiaceae;Chlamydia |
| Candidatus Phytoplasma | 1 | 1 | Bacteria | Bacteria_none | Mycoplasmatota | Mollicutes | Acholeplasmatales | Acholeplasmataceae | Bacteria;Bacteria_none;Mycoplasmatota;Mollicutes;Acholeplasmatales;Acholeplasmataceae;Candidatus Phytoplasma |
| Candidatus Hepatoplasma | 1 | 1 | Bacteria | Bacteria_none | Mycoplasmatota | Mollicutes | Mycoplasmatales | Mycoplasmataceae | Bacteria;Bacteria_none;Mycoplasmatota;Mollicutes;Mycoplasmatales;Mycoplasmataceae;Candidatus Hepatoplasma |
| Methylorubrum | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Hyphomicrobiales | Methylobacteriaceae | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Methylobacteriaceae;Methylorubrum |
| Afipia | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Hyphomicrobiales | Nitrobacteraceae | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Nitrobacteraceae;Afipia |
| Bradyrhizobium | 18 | 18 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Hyphomicrobiales | Nitrobacteraceae | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Nitrobacteraceae;Bradyrhizobium |
| Rhodopseudomonas | 3 | 3 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Hyphomicrobiales | Nitrobacteraceae | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Nitrobacteraceae;Rhodopseudomonas |
| Tardiphaga | 2 | 2 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Hyphomicrobiales | Nitrobacteraceae | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Nitrobacteraceae;Tardiphaga |
| Mesorhizobium | 22 | 22 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Hyphomicrobiales | Phyllobacteriaceae | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Phyllobacteriaceae;Mesorhizobium |
| Tistrella | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Rhodospirillales | Geminicoccaceae | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Rhodospirillales;Geminicoccaceae;Tistrella |
| Sphingomonas | 10 | 10 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Sphingomonadales | Sphingomonadaceae | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Sphingomonas |
| Cupriavidus | 50 | 50 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Burkholderiaceae | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Cupriavidus |
| Paraburkholderia | 2 | 2 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Burkholderiaceae | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Paraburkholderia |
| Ralstonia | 5 | 5 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Burkholderiaceae | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Ralstonia |
| Aquabacterium | 3 | 3 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Burkholderiales_Incertae_sedis | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Burkholderiales_Incertae_sedis;Aquabacterium |
| Hydrogenophaga | 2 | 2 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Comamonadaceae | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Comamonadaceae;Hydrogenophaga |
| Simplicispira | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Comamonadaceae | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Comamonadaceae;Simplicispira |
| Verminephrobacter | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Comamonadaceae | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Comamonadaceae;Verminephrobacter |
| Aquincola | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Sphaerotilaceae | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Sphaerotilaceae;Aquincola |
| Ideonella | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Sphaerotilaceae | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Sphaerotilaceae;Ideonella |
| Paludibacterium | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Neisseriales | Chromobacteriaceae | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Neisseriales;Chromobacteriaceae;Paludibacterium |
| Shewanella | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Gammaproteobacteria | Alteromonadales | Shewanellaceae | Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Alteromonadales;Shewanellaceae;Shewanella |
| Cedecea | 2 | 2 | Bacteria | Bacteria_none | Pseudomonadota | Gammaproteobacteria | Enterobacterales | Enterobacteriaceae | Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Cedecea |
| Escherichia | 4 | 4 | Bacteria | Bacteria_none | Pseudomonadota | Gammaproteobacteria | Enterobacterales | Enterobacteriaceae | Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia |
| Klebsiella | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Gammaproteobacteria | Enterobacterales | Enterobacteriaceae | Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella |
| Gammaproteobacteria_Incertae_sedis_Incertae_sedis_Incertae_sedis | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Gammaproteobacteria | Gammaproteobacteria_Incertae_sedis | Gammaproteobacteria_Incertae_sedis_Incertae_sedis | Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Gammaproteobacteria_Incertae_sedis;Gammaproteobacteria_Incertae_sedis_Incertae_sedis;Gammaproteobacteria_Incertae_sedis_Incertae_sedis_Incertae_sedis |
| Acinetobacter | 2 | 2 | Bacteria | Bacteria_none | Pseudomonadota | Gammaproteobacteria | Moraxellales | Moraxellaceae | Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Moraxellales;Moraxellaceae;Acinetobacter |
| Pasteurella | 2 | 2 | Bacteria | Bacteria_none | Pseudomonadota | Gammaproteobacteria | Pasteurellales | Pasteurellaceae | Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Pasteurellales;Pasteurellaceae;Pasteurella |
| Pseudomonas | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Gammaproteobacteria | Pseudomonadales | Pseudomonadaceae | Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas |
| Homo | 44 | 44 | Eukaryota | Metazoa | Chordata | Mammalia | Primates | Hominidae | Eukaryota;Metazoa;Chordata;Mammalia;Primates;Hominidae;Homo |
| Unknown | 4063 | 4063 | Unclassified | Unknown | Unknown | Unknown | Unknown | Unknown | Unclassified;Unknown;Unknown;Unknown;Unknown;Unknown;Unknown |
| Ashduovirus | 1 | 1 | Viruses | Heunggongvirae | Uroviricota | Caudoviricetes | Caudoviricetes_Incertae_sedis | Caudoviricetes_Incertae_sedis_Incertae_sedis | Viruses;Heunggongvirae;Uroviricota;Caudoviricetes;Caudoviricetes_Incertae_sedis;Caudoviricetes_Incertae_sedis_Incertae_sedis;Ashduovirus |
| Caudoviricetes_Incertae_sedis_Incertae_sedis_Incertae_sedis | 2 | 2 | Viruses | Heunggongvirae | Uroviricota | Caudoviricetes | Caudoviricetes_Incertae_sedis | Caudoviricetes_Incertae_sedis_Incertae_sedis | Viruses;Heunggongvirae;Uroviricota;Caudoviricetes;Caudoviricetes_Incertae_sedis;Caudoviricetes_Incertae_sedis_Incertae_sedis;Caudoviricetes_Incertae_sedis_Incertae_sedis_Incertae_sedis |
Abundance table for the species rank.
Only taxa whose global abundance are above the
abundance_threshold parameter will appear in the table.
| species | bc06 | total | superkingdom | kingdom | phylum | class | order | family | genus | tax |
|---|---|---|---|---|---|---|---|---|---|---|
| Natronomonas sp. ZY43 | 1 | 1 | Archaea | Archaea_none | Euryarchaeota | Halobacteria | Halobacteriales | Haloarculaceae | Natronomonas | Archaea;Archaea_none;Euryarchaeota;Halobacteria;Halobacteriales;Haloarculaceae;Natronomonas;Natronomonas sp. ZY43 |
| Actinomyces oris | 1 | 1 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Actinomycetales | Actinomycetaceae | Actinomyces | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Actinomyces;Actinomyces oris |
| Bifidobacterium actinocoloniiforme | 4 | 4 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bifidobacteriales | Bifidobacteriaceae | Bifidobacterium | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium actinocoloniiforme |
| Bifidobacterium adolescentis | 14 | 14 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bifidobacteriales | Bifidobacteriaceae | Bifidobacterium | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium adolescentis |
| Bifidobacterium angulatum | 7 | 7 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bifidobacteriales | Bifidobacteriaceae | Bifidobacterium | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium angulatum |
| Bifidobacterium animalis | 553 | 553 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bifidobacteriales | Bifidobacteriaceae | Bifidobacterium | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium animalis |
| Bifidobacterium asteroides | 5 | 5 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bifidobacteriales | Bifidobacteriaceae | Bifidobacterium | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium asteroides |
| Bifidobacterium bifidum | 556 | 556 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bifidobacteriales | Bifidobacteriaceae | Bifidobacterium | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium bifidum |
| Bifidobacterium breve | 18110 | 18110 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bifidobacteriales | Bifidobacteriaceae | Bifidobacterium | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium breve |
| Bifidobacterium catenulatum | 13 | 13 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bifidobacteriales | Bifidobacteriaceae | Bifidobacterium | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium catenulatum |
| Bifidobacterium choerinum | 5 | 5 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bifidobacteriales | Bifidobacteriaceae | Bifidobacterium | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium choerinum |
| Bifidobacterium coryneforme | 1 | 1 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bifidobacteriales | Bifidobacteriaceae | Bifidobacterium | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium coryneforme |
| Bifidobacterium dentium | 11 | 11 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bifidobacteriales | Bifidobacteriaceae | Bifidobacterium | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium dentium |
| Bifidobacterium eulemuris | 3 | 3 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bifidobacteriales | Bifidobacteriaceae | Bifidobacterium | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium eulemuris |
| Bifidobacterium imperatoris | 10 | 10 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bifidobacteriales | Bifidobacteriaceae | Bifidobacterium | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium imperatoris |
| Bifidobacterium lemurum | 1 | 1 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bifidobacteriales | Bifidobacteriaceae | Bifidobacterium | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium lemurum |
| Bifidobacterium longum | 37331 | 37331 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bifidobacteriales | Bifidobacteriaceae | Bifidobacterium | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium longum |
| Bifidobacterium pseudocatenulatum | 7 | 7 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bifidobacteriales | Bifidobacteriaceae | Bifidobacterium | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium pseudocatenulatum |
| Bifidobacterium pseudolongum | 9 | 9 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bifidobacteriales | Bifidobacteriaceae | Bifidobacterium | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium pseudolongum |
| Bifidobacterium pullorum | 6 | 6 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bifidobacteriales | Bifidobacteriaceae | Bifidobacterium | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium pullorum |
| Bifidobacterium saguini | 2 | 2 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bifidobacteriales | Bifidobacteriaceae | Bifidobacterium | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium saguini |
| Bifidobacterium scardovii | 12 | 12 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bifidobacteriales | Bifidobacteriaceae | Bifidobacterium | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium scardovii |
| Bifidobacterium sp. SKU | 2120 | 2120 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bifidobacteriales | Bifidobacteriaceae | Bifidobacterium | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium sp. SKU |
| Bifidobacterium sp. TKU | 1105 | 1105 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bifidobacteriales | Bifidobacteriaceae | Bifidobacterium | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium sp. TKU |
| Bifidobacterium subtile | 2 | 2 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bifidobacteriales | Bifidobacteriaceae | Bifidobacterium | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium subtile |
| Bifidobacterium thermophilum | 1 | 1 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bifidobacteriales | Bifidobacteriaceae | Bifidobacterium | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium thermophilum |
| Streptomyces armeniacus | 1 | 1 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Kitasatosporales | Streptomycetaceae | Streptomyces | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Kitasatosporales;Streptomycetaceae;Streptomyces;Streptomyces armeniacus |
| Streptomyces sp. CdTB01 | 1 | 1 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Kitasatosporales | Streptomycetaceae | Streptomyces | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Kitasatosporales;Streptomycetaceae;Streptomyces;Streptomyces sp. CdTB01 |
| Streptomyces tirandamycinicus | 1 | 1 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Kitasatosporales | Streptomycetaceae | Streptomyces | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Kitasatosporales;Streptomycetaceae;Streptomyces;Streptomyces tirandamycinicus |
| Microbacterium sp. 4R-513 | 4 | 4 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Micrococcales | Microbacteriaceae | Microbacterium | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Micrococcales;Microbacteriaceae;Microbacterium;Microbacterium sp. 4R-513 |
| Rothia kristinae | 2 | 2 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Micrococcales | Micrococcaceae | Rothia | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Micrococcales;Micrococcaceae;Rothia;Rothia kristinae |
| Corynebacterium caspium | 1 | 1 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Mycobacteriales | Corynebacteriaceae | Corynebacterium | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Mycobacteriales;Corynebacteriaceae;Corynebacterium;Corynebacterium caspium |
| Mycobacteroides abscessus | 1 | 1 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Mycobacteriales | Mycobacteriaceae | Mycobacteroides | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Mycobacteroides;Mycobacteroides abscessus |
| Rhodococcus fascians | 13 | 13 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Mycobacteriales | Nocardiaceae | Rhodococcus | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Mycobacteriales;Nocardiaceae;Rhodococcus;Rhodococcus fascians |
| Cutibacterium acnes | 9 | 9 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Propionibacteriales | Propionibacteriaceae | Cutibacterium | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Cutibacterium;Cutibacterium acnes |
| Nocardiopsis exhalans | 1 | 1 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Streptosporangiales | Nocardiopsaceae | Nocardiopsis | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Streptosporangiales;Nocardiopsaceae;Nocardiopsis;Nocardiopsis exhalans |
| Bacillus halotolerans | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Bacillales | Bacillaceae | Bacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus;Bacillus halotolerans |
| Bacillus thuringiensis | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Bacillales | Bacillaceae | Bacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus;Bacillus thuringiensis |
| Bacillus velezensis | 2 | 2 | Bacteria | Bacteria_none | Bacillota | Bacilli | Bacillales | Bacillaceae | Bacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus;Bacillus velezensis |
| Caldibacillus thermoamylovorans | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Bacillales | Bacillaceae | Caldibacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Bacillaceae;Caldibacillus;Caldibacillus thermoamylovorans |
| Parageobacillus thermoglucosidasius | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Bacillales | Bacillaceae | Parageobacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Bacillaceae;Parageobacillus;Parageobacillus thermoglucosidasius |
| Weizmannia coagulans | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Bacillales | Bacillaceae | Weizmannia | Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Bacillaceae;Weizmannia;Weizmannia coagulans |
| Listeria marthii | 37 | 37 | Bacteria | Bacteria_none | Bacillota | Bacilli | Bacillales | Listeriaceae | Listeria | Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Listeriaceae;Listeria;Listeria marthii |
| Listeria monocytogenes | 5 | 5 | Bacteria | Bacteria_none | Bacillota | Bacilli | Bacillales | Listeriaceae | Listeria | Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Listeriaceae;Listeria;Listeria monocytogenes |
| Solibacillus silvestris | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Bacillales | Planococcaceae | Solibacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Planococcaceae;Solibacillus;Solibacillus silvestris |
| Sporosarcina thermotolerans | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Bacillales | Planococcaceae | Sporosarcina | Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Planococcaceae;Sporosarcina;Sporosarcina thermotolerans |
| Staphylococcus aureus | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Bacillales | Staphylococcaceae | Staphylococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Staphylococcaceae;Staphylococcus;Staphylococcus aureus |
| Staphylococcus sp. M0911 | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Bacillales | Staphylococcaceae | Staphylococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Staphylococcaceae;Staphylococcus;Staphylococcus sp. M0911 |
| Carnobacterium viridans | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Carnobacteriaceae | Carnobacterium | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Carnobacterium;Carnobacterium viridans |
| Enterococcus casseliflavus | 2 | 2 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Enterococcaceae | Enterococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus casseliflavus |
| Enterococcus faecalis | 16 | 16 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Enterococcaceae | Enterococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus faecalis |
| Enterococcus faecium | 2 | 2 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Enterococcaceae | Enterococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus faecium |
| Enterococcus lactis | 15 | 15 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Enterococcaceae | Enterococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus lactis |
| Enterococcus sp. FDAARGOS_375 | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Enterococcaceae | Enterococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus sp. FDAARGOS_375 |
| Companilactobacillus alimentarius | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Companilactobacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus;Companilactobacillus alimentarius |
| Lacticaseibacillus casei | 12119 | 12119 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Lacticaseibacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus;Lacticaseibacillus casei |
| Lacticaseibacillus chiayiensis | 10 | 10 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Lacticaseibacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus;Lacticaseibacillus chiayiensis |
| Lacticaseibacillus paracasei | 104 | 104 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Lacticaseibacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus;Lacticaseibacillus paracasei |
| Lacticaseibacillus rhamnosus | 5539 | 5539 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Lacticaseibacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus;Lacticaseibacillus rhamnosus |
| Lacticaseibacillus zeae | 13 | 13 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Lacticaseibacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus;Lacticaseibacillus zeae |
| Lactiplantibacillus argentoratensis | 2 | 2 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Lactiplantibacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus;Lactiplantibacillus argentoratensis |
| Lactiplantibacillus paraplantarum | 3 | 3 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Lactiplantibacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus;Lactiplantibacillus paraplantarum |
| Lactiplantibacillus pentosus | 3 | 3 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Lactiplantibacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus;Lactiplantibacillus pentosus |
| Lactiplantibacillus plantarum | 7301 | 7301 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Lactiplantibacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus;Lactiplantibacillus plantarum |
| Lactobacillus acidophilus | 48329 | 48329 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Lactobacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus acidophilus |
| Lactobacillus amylolyticus | 2 | 2 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Lactobacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus amylolyticus |
| Lactobacillus amylovorus | 8 | 8 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Lactobacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus amylovorus |
| Lactobacillus apis | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Lactobacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus apis |
| Lactobacillus crispatus | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Lactobacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus crispatus |
| Lactobacillus delbrueckii | 107 | 107 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Lactobacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus delbrueckii |
| Lactobacillus helveticus | 33 | 33 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Lactobacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus helveticus |
| Lactobacillus johnsonii | 3 | 3 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Lactobacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus johnsonii |
| Lactobacillus kefiranofaciens | 3 | 3 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Lactobacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus kefiranofaciens |
| Lactobacillus taiwanensis | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Lactobacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus taiwanensis |
| Latilactobacillus curvatus | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Latilactobacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus;Latilactobacillus curvatus |
| Latilactobacillus sakei | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Latilactobacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus;Latilactobacillus sakei |
| Lentilactobacillus buchneri | 13 | 13 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Lentilactobacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus;Lentilactobacillus buchneri |
| Leuconostoc citreum | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Leuconostoc | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc;Leuconostoc citreum |
| Leuconostoc falkenbergense | 3 | 3 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Leuconostoc | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc;Leuconostoc falkenbergense |
| Leuconostoc mesenteroides | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Leuconostoc | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc;Leuconostoc mesenteroides |
| Leuconostoc pseudomesenteroides | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Leuconostoc | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc;Leuconostoc pseudomesenteroides |
| Levilactobacillus brevis | 3 | 3 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Levilactobacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus;Levilactobacillus brevis |
| Ligilactobacillus acidipiscis | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Ligilactobacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Ligilactobacillus;Ligilactobacillus acidipiscis |
| Ligilactobacillus salivarius | 74 | 74 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Ligilactobacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Ligilactobacillus;Ligilactobacillus salivarius |
| Limosilactobacillus fermentum | 19 | 19 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Limosilactobacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus;Limosilactobacillus fermentum |
| Limosilactobacillus gastricus | 4 | 4 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Limosilactobacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus;Limosilactobacillus gastricus |
| Limosilactobacillus mucosae | 38 | 38 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Limosilactobacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus;Limosilactobacillus mucosae |
| Limosilactobacillus reuteri | 2 | 2 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Limosilactobacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus;Limosilactobacillus reuteri |
| Liquorilactobacillus nagelii | 2 | 2 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Liquorilactobacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus;Liquorilactobacillus nagelii |
| Pediococcus damnosus | 5 | 5 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Pediococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus;Pediococcus damnosus |
| Secundilactobacillus paracollinoides | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Secundilactobacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Secundilactobacillus;Secundilactobacillus paracollinoides |
| Weissella confusa | 3 | 3 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Weissella | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella;Weissella confusa |
| Weissella jogaejeotgali | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Weissella | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella;Weissella jogaejeotgali |
| Weissella paramesenteroides | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Weissella | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella;Weissella paramesenteroides |
| Lactococcus cremoris | 92 | 92 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Lactococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus;Lactococcus cremoris |
| Lactococcus garvieae | 2 | 2 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Lactococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus;Lactococcus garvieae |
| Lactococcus lactis | 18455 | 18455 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Lactococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus;Lactococcus lactis |
| Lactococcus protaetiae | 2 | 2 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Lactococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus;Lactococcus protaetiae |
| Lactococcus raffinolactis | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Lactococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus;Lactococcus raffinolactis |
| Lactococcus sp. NH2-7C | 19 | 19 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Lactococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus;Lactococcus sp. NH2-7C |
| Lactococcus taiwanensis | 35 | 35 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Lactococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus;Lactococcus taiwanensis |
| Streptococcus acidominimus | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus acidominimus |
| Streptococcus agalactiae | 89 | 89 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus agalactiae |
| Streptococcus anginosus | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus anginosus |
| Streptococcus dysgalactiae | 2 | 2 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus dysgalactiae |
| Streptococcus equinus | 3 | 3 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus equinus |
| Streptococcus infantis | 2 | 2 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus infantis |
| Streptococcus mitis | 2 | 2 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus mitis |
| Streptococcus oralis | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus oralis |
| Streptococcus parasuis | 5 | 5 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus parasuis |
| Streptococcus parauberis | 2 | 2 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus parauberis |
| Streptococcus pasteurianus | 11 | 11 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus pasteurianus |
| Streptococcus pneumoniae | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus pneumoniae |
| Streptococcus pyogenes | 5 | 5 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus pyogenes |
| Streptococcus salivarius | 10 | 10 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus salivarius |
| Streptococcus sanguinis | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus sanguinis |
| Streptococcus sp. zg-86 | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus sp. zg-86 |
| Streptococcus suis | 5 | 5 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus suis |
| Streptococcus thermophilus | 23589 | 23589 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus thermophilus |
| Streptococcus uberis | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus uberis |
| Streptococcus vestibularis | 2 | 2 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus vestibularis |
| Clostridium beijerinckii | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Clostridia | Eubacteriales | Clostridiaceae | Clostridium | Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium beijerinckii |
| Clostridium perfringens | 2 | 2 | Bacteria | Bacteria_none | Bacillota | Clostridia | Eubacteriales | Clostridiaceae | Clostridium | Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium perfringens |
| Clostridioides difficile | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Clostridia | Eubacteriales | Peptostreptococcaceae | Clostridioides | Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Peptostreptococcaceae;Clostridioides;Clostridioides difficile |
| Candidatus Bipolaricaulis anaerobius | 1 | 1 | Bacteria | Bacteria_none | Candidatus Bipolaricaulota | Candidatus Bipolaricaulota_Incertae_sedis | Candidatus Bipolaricaulota_Incertae_sedis_Incertae_sedis | Candidatus Bipolaricaulota_Incertae_sedis_Incertae_sedis_Incertae_sedis | Candidatus Bipolaricaulis | Bacteria;Bacteria_none;Candidatus Bipolaricaulota;Candidatus Bipolaricaulota_Incertae_sedis;Candidatus Bipolaricaulota_Incertae_sedis_Incertae_sedis;Candidatus Bipolaricaulota_Incertae_sedis_Incertae_sedis_Incertae_sedis;Candidatus Bipolaricaulis;Candidatus Bipolaricaulis anaerobius |
| Chlamydia trachomatis | 1 | 1 | Bacteria | Bacteria_none | Chlamydiota | Chlamydiia | Chlamydiales | Chlamydiaceae | Chlamydia | Bacteria;Bacteria_none;Chlamydiota;Chlamydiia;Chlamydiales;Chlamydiaceae;Chlamydia;Chlamydia trachomatis |
| Candidatus Phytoplasma mali | 1 | 1 | Bacteria | Bacteria_none | Mycoplasmatota | Mollicutes | Acholeplasmatales | Acholeplasmataceae | Candidatus Phytoplasma | Bacteria;Bacteria_none;Mycoplasmatota;Mollicutes;Acholeplasmatales;Acholeplasmataceae;Candidatus Phytoplasma;Candidatus Phytoplasma mali |
| Candidatus Hepatoplasma crinochetorum | 1 | 1 | Bacteria | Bacteria_none | Mycoplasmatota | Mollicutes | Mycoplasmatales | Mycoplasmataceae | Candidatus Hepatoplasma | Bacteria;Bacteria_none;Mycoplasmatota;Mollicutes;Mycoplasmatales;Mycoplasmataceae;Candidatus Hepatoplasma;Candidatus Hepatoplasma crinochetorum |
| Methylorubrum sp. B1-46 | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Hyphomicrobiales | Methylobacteriaceae | Methylorubrum | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Methylobacteriaceae;Methylorubrum;Methylorubrum sp. B1-46 |
| [Pseudomonas] carboxydohydrogena | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Hyphomicrobiales | Nitrobacteraceae | Afipia | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Nitrobacteraceae;Afipia;[Pseudomonas] carboxydohydrogena |
| Bradyrhizobium canariense | 3 | 3 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Hyphomicrobiales | Nitrobacteraceae | Bradyrhizobium | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Nitrobacteraceae;Bradyrhizobium;Bradyrhizobium canariense |
| Bradyrhizobium elkanii | 2 | 2 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Hyphomicrobiales | Nitrobacteraceae | Bradyrhizobium | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Nitrobacteraceae;Bradyrhizobium;Bradyrhizobium elkanii |
| Bradyrhizobium sp. 191 | 3 | 3 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Hyphomicrobiales | Nitrobacteraceae | Bradyrhizobium | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Nitrobacteraceae;Bradyrhizobium;Bradyrhizobium sp. 191 |
| Bradyrhizobium sp. BTAi1 | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Hyphomicrobiales | Nitrobacteraceae | Bradyrhizobium | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Nitrobacteraceae;Bradyrhizobium;Bradyrhizobium sp. BTAi1 |
| Bradyrhizobium sp. CB1024 | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Hyphomicrobiales | Nitrobacteraceae | Bradyrhizobium | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Nitrobacteraceae;Bradyrhizobium;Bradyrhizobium sp. CB1024 |
| Bradyrhizobium sp. CCBAU 051011 | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Hyphomicrobiales | Nitrobacteraceae | Bradyrhizobium | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Nitrobacteraceae;Bradyrhizobium;Bradyrhizobium sp. CCBAU 051011 |
| Bradyrhizobium sp. CIAT3101 | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Hyphomicrobiales | Nitrobacteraceae | Bradyrhizobium | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Nitrobacteraceae;Bradyrhizobium;Bradyrhizobium sp. CIAT3101 |
| Bradyrhizobium sp. SK17 | 4 | 4 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Hyphomicrobiales | Nitrobacteraceae | Bradyrhizobium | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Nitrobacteraceae;Bradyrhizobium;Bradyrhizobium sp. SK17 |
| Bradyrhizobium symbiodeficiens | 2 | 2 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Hyphomicrobiales | Nitrobacteraceae | Bradyrhizobium | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Nitrobacteraceae;Bradyrhizobium;Bradyrhizobium symbiodeficiens |
| Rhodopseudomonas palustris | 2 | 2 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Hyphomicrobiales | Nitrobacteraceae | Rhodopseudomonas | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Nitrobacteraceae;Rhodopseudomonas;Rhodopseudomonas palustris |
| Rhodopseudomonas sp. SK50-23 | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Hyphomicrobiales | Nitrobacteraceae | Rhodopseudomonas | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Nitrobacteraceae;Rhodopseudomonas;Rhodopseudomonas sp. SK50-23 |
| Tardiphaga sp. 37S4 | 2 | 2 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Hyphomicrobiales | Nitrobacteraceae | Tardiphaga | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Nitrobacteraceae;Tardiphaga;Tardiphaga sp. 37S4 |
| Mesorhizobium sp. B2-8-5 | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Hyphomicrobiales | Phyllobacteriaceae | Mesorhizobium | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Phyllobacteriaceae;Mesorhizobium;Mesorhizobium sp. B2-8-5 |
| Mesorhizobium sp. M1A.F.Ca.IN.022.06.1.1 | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Hyphomicrobiales | Phyllobacteriaceae | Mesorhizobium | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Phyllobacteriaceae;Mesorhizobium;Mesorhizobium sp. M1A.F.Ca.IN.022.06.1.1 |
| Mesorhizobium terrae | 20 | 20 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Hyphomicrobiales | Phyllobacteriaceae | Mesorhizobium | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Phyllobacteriaceae;Mesorhizobium;Mesorhizobium terrae |
| Tistrella mobilis | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Rhodospirillales | Geminicoccaceae | Tistrella | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Rhodospirillales;Geminicoccaceae;Tistrella;Tistrella mobilis |
| Sphingomonas melonis | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Sphingomonadales | Sphingomonadaceae | Sphingomonas | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Sphingomonas;Sphingomonas melonis |
| Sphingomonas panacisoli | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Sphingomonadales | Sphingomonadaceae | Sphingomonas | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Sphingomonas;Sphingomonas panacisoli |
| Sphingomonas sp. NIBR 02145 | 7 | 7 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Sphingomonadales | Sphingomonadaceae | Sphingomonas | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Sphingomonas;Sphingomonas sp. NIBR 02145 |
| Sphingomonas sp. R1 | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Sphingomonadales | Sphingomonadaceae | Sphingomonas | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Sphingomonas;Sphingomonas sp. R1 |
| Cupriavidus metallidurans | 27 | 27 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Burkholderiaceae | Cupriavidus | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Cupriavidus;Cupriavidus metallidurans |
| Cupriavidus necator | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Burkholderiaceae | Cupriavidus | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Cupriavidus;Cupriavidus necator |
| Cupriavidus oxalaticus | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Burkholderiaceae | Cupriavidus | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Cupriavidus;Cupriavidus oxalaticus |
| Cupriavidus pauculus | 14 | 14 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Burkholderiaceae | Cupriavidus | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Cupriavidus;Cupriavidus pauculus |
| Cupriavidus pinatubonensis | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Burkholderiaceae | Cupriavidus | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Cupriavidus;Cupriavidus pinatubonensis |
| Cupriavidus sp. EM10 | 6 | 6 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Burkholderiaceae | Cupriavidus | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Cupriavidus;Cupriavidus sp. EM10 |
| Paraburkholderia ginsengisoli | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Burkholderiaceae | Paraburkholderia | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Paraburkholderia;Paraburkholderia ginsengisoli |
| Paraburkholderia xenovorans | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Burkholderiaceae | Paraburkholderia | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Paraburkholderia;Paraburkholderia xenovorans |
| Ralstonia insidiosa | 4 | 4 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Burkholderiaceae | Ralstonia | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Ralstonia;Ralstonia insidiosa |
| Ralstonia wenshanensis | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Burkholderiaceae | Ralstonia | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Ralstonia;Ralstonia wenshanensis |
| Aquabacterium olei | 3 | 3 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Burkholderiales_Incertae_sedis | Aquabacterium | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Burkholderiales_Incertae_sedis;Aquabacterium;Aquabacterium olei |
| Hydrogenophaga sp. PAMC20947 | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Comamonadaceae | Hydrogenophaga | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Comamonadaceae;Hydrogenophaga;Hydrogenophaga sp. PAMC20947 |
| Hydrogenophaga sp. YM1 | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Comamonadaceae | Hydrogenophaga | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Comamonadaceae;Hydrogenophaga;Hydrogenophaga sp. YM1 |
| Simplicispira suum | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Comamonadaceae | Simplicispira | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Comamonadaceae;Simplicispira;Simplicispira suum |
| Verminephrobacter eiseniae | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Comamonadaceae | Verminephrobacter | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Comamonadaceae;Verminephrobacter;Verminephrobacter eiseniae |
| Aquincola tertiaricarbonis | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Sphaerotilaceae | Aquincola | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Sphaerotilaceae;Aquincola;Aquincola tertiaricarbonis |
| Ideonella dechloratans | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Sphaerotilaceae | Ideonella | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Sphaerotilaceae;Ideonella;Ideonella dechloratans |
| Paludibacterium paludis | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Neisseriales | Chromobacteriaceae | Paludibacterium | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Neisseriales;Chromobacteriaceae;Paludibacterium;Paludibacterium paludis |
| Shewanella sp. ANA-3 | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Gammaproteobacteria | Alteromonadales | Shewanellaceae | Shewanella | Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Alteromonadales;Shewanellaceae;Shewanella;Shewanella sp. ANA-3 |
| Cedecea neteri | 2 | 2 | Bacteria | Bacteria_none | Pseudomonadota | Gammaproteobacteria | Enterobacterales | Enterobacteriaceae | Cedecea | Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Cedecea;Cedecea neteri |
| Escherichia coli | 4 | 4 | Bacteria | Bacteria_none | Pseudomonadota | Gammaproteobacteria | Enterobacterales | Enterobacteriaceae | Escherichia | Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia;Escherichia coli |
| Klebsiella pneumoniae | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Gammaproteobacteria | Enterobacterales | Enterobacteriaceae | Klebsiella | Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella;Klebsiella pneumoniae |
| Bathymodiolus septemdierum thioautotrophic gill symbiont | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Gammaproteobacteria | Gammaproteobacteria_Incertae_sedis | Gammaproteobacteria_Incertae_sedis_Incertae_sedis | Gammaproteobacteria_Incertae_sedis_Incertae_sedis_Incertae_sedis | Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Gammaproteobacteria_Incertae_sedis;Gammaproteobacteria_Incertae_sedis_Incertae_sedis;Gammaproteobacteria_Incertae_sedis_Incertae_sedis_Incertae_sedis;Bathymodiolus septemdierum thioautotrophic gill symbiont |
| Acinetobacter junii | 2 | 2 | Bacteria | Bacteria_none | Pseudomonadota | Gammaproteobacteria | Moraxellales | Moraxellaceae | Acinetobacter | Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Moraxellales;Moraxellaceae;Acinetobacter;Acinetobacter junii |
| Pasteurella multocida | 2 | 2 | Bacteria | Bacteria_none | Pseudomonadota | Gammaproteobacteria | Pasteurellales | Pasteurellaceae | Pasteurella | Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Pasteurellales;Pasteurellaceae;Pasteurella;Pasteurella multocida |
| Pseudomonas syringae group genomosp. 7 | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Gammaproteobacteria | Pseudomonadales | Pseudomonadaceae | Pseudomonas | Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas;Pseudomonas syringae group genomosp. 7 |
| Homo sapiens | 44 | 44 | Eukaryota | Metazoa | Chordata | Mammalia | Primates | Hominidae | Homo | Eukaryota;Metazoa;Chordata;Mammalia;Primates;Hominidae;Homo;Homo sapiens |
| Unknown | 4063 | 4063 | Unclassified | Unknown | Unknown | Unknown | Unknown | Unknown | Unknown | Unclassified;Unknown;Unknown;Unknown;Unknown;Unknown;Unknown;Unknown |
| Ashduovirus A2 | 1 | 1 | Viruses | Heunggongvirae | Uroviricota | Caudoviricetes | Caudoviricetes_Incertae_sedis | Caudoviricetes_Incertae_sedis_Incertae_sedis | Ashduovirus | Viruses;Heunggongvirae;Uroviricota;Caudoviricetes;Caudoviricetes_Incertae_sedis;Caudoviricetes_Incertae_sedis_Incertae_sedis;Ashduovirus;Ashduovirus A2 |
| Lactococcus phage Tuc2009 | 2 | 2 | Viruses | Heunggongvirae | Uroviricota | Caudoviricetes | Caudoviricetes_Incertae_sedis | Caudoviricetes_Incertae_sedis_Incertae_sedis | Caudoviricetes_Incertae_sedis_Incertae_sedis_Incertae_sedis | Viruses;Heunggongvirae;Uroviricota;Caudoviricetes;Caudoviricetes_Incertae_sedis;Caudoviricetes_Incertae_sedis_Incertae_sedis;Caudoviricetes_Incertae_sedis_Incertae_sedis_Incertae_sedis;Lactococcus phage Tuc2009 |
Rarefied abundance table for the phylum rank.
All samples have been randomly subsetted to have the same number of reads.
| phylum | bc06 | total | superkingdom | kingdom | tax |
|---|---|---|---|---|---|
| Euryarchaeota | 0 | 1 | Archaea | Archaea_none | Archaea;Archaea_none;Euryarchaeota |
| Actinomycetota | 56896 | 56922 | Bacteria | Bacteria_none | Bacteria;Bacteria_none;Actinomycetota |
| Bacillota | 110411 | 110399 | Bacteria | Bacteria_none | Bacteria;Bacteria_none;Bacillota |
| Candidatus Bipolaricaulota | 1 | 1 | Bacteria | Bacteria_none | Bacteria;Bacteria_none;Candidatus Bipolaricaulota |
| Chlamydiota | 1 | 1 | Bacteria | Bacteria_none | Bacteria;Bacteria_none;Chlamydiota |
| Mycoplasmatota | 2 | 2 | Bacteria | Bacteria_none | Bacteria;Bacteria_none;Mycoplasmatota |
| Pseudomonadota | 138 | 132 | Bacteria | Bacteria_none | Bacteria;Bacteria_none;Pseudomonadota |
| Chordata | 42 | 44 | Eukaryota | Metazoa | Eukaryota;Metazoa;Chordata |
| Unknown | 3856 | 3845 | Unclassified | Unknown | Unclassified;Unknown;Unknown |
| Uroviricota | 3 | 3 | Viruses | Heunggongvirae | Viruses;Heunggongvirae;Uroviricota |
Rarefied abundance table for the class rank.
All samples have been randomly subsetted to have the same number of reads.
| class | bc06 | total | superkingdom | kingdom | phylum | tax |
|---|---|---|---|---|---|---|
| Halobacteria | 1 | 1 | Archaea | Archaea_none | Euryarchaeota | Archaea;Archaea_none;Euryarchaeota;Halobacteria |
| Actinomycetes | 56992 | 56879 | Bacteria | Bacteria_none | Actinomycetota | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes |
| Bacilli | 110361 | 110425 | Bacteria | Bacteria_none | Bacillota | Bacteria;Bacteria_none;Bacillota;Bacilli |
| Clostridia | 4 | 4 | Bacteria | Bacteria_none | Bacillota | Bacteria;Bacteria_none;Bacillota;Clostridia |
| Candidatus Bipolaricaulota_Incertae_sedis | 1 | 1 | Bacteria | Bacteria_none | Candidatus Bipolaricaulota | Bacteria;Bacteria_none;Candidatus Bipolaricaulota;Candidatus Bipolaricaulota_Incertae_sedis |
| Chlamydiia | 1 | 1 | Bacteria | Bacteria_none | Chlamydiota | Bacteria;Bacteria_none;Chlamydiota;Chlamydiia |
| Mollicutes | 2 | 2 | Bacteria | Bacteria_none | Mycoplasmatota | Bacteria;Bacteria_none;Mycoplasmatota;Mollicutes |
| Alphaproteobacteria | 54 | 53 | Bacteria | Bacteria_none | Pseudomonadota | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria |
| Betaproteobacteria | 64 | 62 | Bacteria | Bacteria_none | Pseudomonadota | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria |
| Gammaproteobacteria | 14 | 14 | Bacteria | Bacteria_none | Pseudomonadota | Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria |
| Mammalia | 41 | 43 | Eukaryota | Metazoa | Chordata | Eukaryota;Metazoa;Chordata;Mammalia |
| Unknown | 3812 | 3862 | Unclassified | Unknown | Unknown | Unclassified;Unknown;Unknown;Unknown |
| Caudoviricetes | 3 | 3 | Viruses | Heunggongvirae | Uroviricota | Viruses;Heunggongvirae;Uroviricota;Caudoviricetes |
Rarefied abundance table for the order rank.
All samples have been randomly subsetted to have the same number of reads.
| order | bc06 | total | superkingdom | kingdom | phylum | class | tax |
|---|---|---|---|---|---|---|---|
| Halobacteriales | 1 | 1 | Archaea | Archaea_none | Euryarchaeota | Halobacteria | Archaea;Archaea_none;Euryarchaeota;Halobacteria;Halobacteriales |
| Actinomycetales | 1 | 1 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Actinomycetales |
| Bifidobacteriales | 56801 | 56889 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales |
| Kitasatosporales | 3 | 3 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Kitasatosporales |
| Micrococcales | 6 | 6 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Micrococcales |
| Mycobacteriales | 14 | 14 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Mycobacteriales |
| Propionibacteriales | 9 | 7 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Propionibacteriales |
| Streptosporangiales | 1 | 1 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Streptosporangiales |
| Bacillales | 49 | 51 | Bacteria | Bacteria_none | Bacillota | Bacilli | Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales |
| Lactobacillales | 110427 | 110344 | Bacteria | Bacteria_none | Bacillota | Bacilli | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales |
| Eubacteriales | 4 | 3 | Bacteria | Bacteria_none | Bacillota | Clostridia | Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales |
| Candidatus Bipolaricaulota_Incertae_sedis_Incertae_sedis | 1 | 1 | Bacteria | Bacteria_none | Candidatus Bipolaricaulota | Candidatus Bipolaricaulota_Incertae_sedis | Bacteria;Bacteria_none;Candidatus Bipolaricaulota;Candidatus Bipolaricaulota_Incertae_sedis;Candidatus Bipolaricaulota_Incertae_sedis_Incertae_sedis |
| Chlamydiales | 1 | 1 | Bacteria | Bacteria_none | Chlamydiota | Chlamydiia | Bacteria;Bacteria_none;Chlamydiota;Chlamydiia;Chlamydiales |
| Acholeplasmatales | 1 | 1 | Bacteria | Bacteria_none | Mycoplasmatota | Mollicutes | Bacteria;Bacteria_none;Mycoplasmatota;Mollicutes;Acholeplasmatales |
| Mycoplasmatales | 1 | 1 | Bacteria | Bacteria_none | Mycoplasmatota | Mollicutes | Bacteria;Bacteria_none;Mycoplasmatota;Mollicutes;Mycoplasmatales |
| Hyphomicrobiales | 43 | 43 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales |
| Rhodospirillales | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Rhodospirillales |
| Sphingomonadales | 10 | 8 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Sphingomonadales |
| Burkholderiales | 62 | 64 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales |
| Neisseriales | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Neisseriales |
| Alteromonadales | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Gammaproteobacteria | Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Alteromonadales |
| Enterobacterales | 6 | 6 | Bacteria | Bacteria_none | Pseudomonadota | Gammaproteobacteria | Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Enterobacterales |
| Gammaproteobacteria_Incertae_sedis | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Gammaproteobacteria | Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Gammaproteobacteria_Incertae_sedis |
| Moraxellales | 2 | 2 | Bacteria | Bacteria_none | Pseudomonadota | Gammaproteobacteria | Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Moraxellales |
| Pasteurellales | 2 | 2 | Bacteria | Bacteria_none | Pseudomonadota | Gammaproteobacteria | Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Pasteurellales |
| Pseudomonadales | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Gammaproteobacteria | Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Pseudomonadales |
| Primates | 43 | 42 | Eukaryota | Metazoa | Chordata | Mammalia | Eukaryota;Metazoa;Chordata;Mammalia;Primates |
| Unknown | 3855 | 3851 | Unclassified | Unknown | Unknown | Unknown | Unclassified;Unknown;Unknown;Unknown;Unknown |
| Caudoviricetes_Incertae_sedis | 2 | 3 | Viruses | Heunggongvirae | Uroviricota | Caudoviricetes | Viruses;Heunggongvirae;Uroviricota;Caudoviricetes;Caudoviricetes_Incertae_sedis |
Rarefied abundance table for the family rank.
All samples have been randomly subsetted to have the same number of reads.
| family | bc06 | total | superkingdom | kingdom | phylum | class | order | tax |
|---|---|---|---|---|---|---|---|---|
| Haloarculaceae | 1 | 1 | Archaea | Archaea_none | Euryarchaeota | Halobacteria | Halobacteriales | Archaea;Archaea_none;Euryarchaeota;Halobacteria;Halobacteriales;Haloarculaceae |
| Actinomycetaceae | 1 | 1 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Actinomycetales | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae |
| Bifidobacteriaceae | 56860 | 56920 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bifidobacteriales | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae |
| Streptomycetaceae | 2 | 3 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Kitasatosporales | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Kitasatosporales;Streptomycetaceae |
| Microbacteriaceae | 3 | 4 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Micrococcales | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Micrococcales;Microbacteriaceae |
| Micrococcaceae | 2 | 2 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Micrococcales | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Micrococcales;Micrococcaceae |
| Corynebacteriaceae | 1 | 1 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Mycobacteriales | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Mycobacteriales;Corynebacteriaceae |
| Mycobacteriaceae | 1 | 1 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Mycobacteriales | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae |
| Nocardiaceae | 12 | 12 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Mycobacteriales | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Mycobacteriales;Nocardiaceae |
| Propionibacteriaceae | 8 | 8 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Propionibacteriales | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae |
| Nocardiopsaceae | 1 | 1 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Streptosporangiales | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Streptosporangiales;Nocardiopsaceae |
| Bacillaceae | 7 | 7 | Bacteria | Bacteria_none | Bacillota | Bacilli | Bacillales | Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Bacillaceae |
| Listeriaceae | 39 | 38 | Bacteria | Bacteria_none | Bacillota | Bacilli | Bacillales | Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Listeriaceae |
| Planococcaceae | 2 | 2 | Bacteria | Bacteria_none | Bacillota | Bacilli | Bacillales | Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Planococcaceae |
| Staphylococcaceae | 2 | 2 | Bacteria | Bacteria_none | Bacillota | Bacilli | Bacillales | Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Staphylococcaceae |
| Carnobacteriaceae | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae |
| Enterococcaceae | 32 | 35 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Enterococcaceae |
| Lactobacillaceae | 70072 | 69979 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae |
| Streptococcaceae | 40268 | 40309 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae |
| Clostridiaceae | 3 | 3 | Bacteria | Bacteria_none | Bacillota | Clostridia | Eubacteriales | Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Clostridiaceae |
| Peptostreptococcaceae | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Clostridia | Eubacteriales | Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Peptostreptococcaceae |
| Candidatus Bipolaricaulota_Incertae_sedis_Incertae_sedis_Incertae_sedis | 0 | 1 | Bacteria | Bacteria_none | Candidatus Bipolaricaulota | Candidatus Bipolaricaulota_Incertae_sedis | Candidatus Bipolaricaulota_Incertae_sedis_Incertae_sedis | Bacteria;Bacteria_none;Candidatus Bipolaricaulota;Candidatus Bipolaricaulota_Incertae_sedis;Candidatus Bipolaricaulota_Incertae_sedis_Incertae_sedis;Candidatus Bipolaricaulota_Incertae_sedis_Incertae_sedis_Incertae_sedis |
| Chlamydiaceae | 1 | 1 | Bacteria | Bacteria_none | Chlamydiota | Chlamydiia | Chlamydiales | Bacteria;Bacteria_none;Chlamydiota;Chlamydiia;Chlamydiales;Chlamydiaceae |
| Acholeplasmataceae | 1 | 1 | Bacteria | Bacteria_none | Mycoplasmatota | Mollicutes | Acholeplasmatales | Bacteria;Bacteria_none;Mycoplasmatota;Mollicutes;Acholeplasmatales;Acholeplasmataceae |
| Mycoplasmataceae | 1 | 1 | Bacteria | Bacteria_none | Mycoplasmatota | Mollicutes | Mycoplasmatales | Bacteria;Bacteria_none;Mycoplasmatota;Mollicutes;Mycoplasmatales;Mycoplasmataceae |
| Methylobacteriaceae | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Hyphomicrobiales | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Methylobacteriaceae |
| Nitrobacteraceae | 23 | 22 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Hyphomicrobiales | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Nitrobacteraceae |
| Phyllobacteriaceae | 21 | 20 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Hyphomicrobiales | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Phyllobacteriaceae |
| Geminicoccaceae | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Rhodospirillales | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Rhodospirillales;Geminicoccaceae |
| Sphingomonadaceae | 10 | 10 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Sphingomonadales | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae |
| Burkholderiaceae | 55 | 56 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Burkholderiaceae |
| Burkholderiales_Incertae_sedis | 3 | 3 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Burkholderiales_Incertae_sedis |
| Comamonadaceae | 3 | 4 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Comamonadaceae |
| Sphaerotilaceae | 2 | 2 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Sphaerotilaceae |
| Chromobacteriaceae | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Neisseriales | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Neisseriales;Chromobacteriaceae |
| Shewanellaceae | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Gammaproteobacteria | Alteromonadales | Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Alteromonadales;Shewanellaceae |
| Enterobacteriaceae | 7 | 7 | Bacteria | Bacteria_none | Pseudomonadota | Gammaproteobacteria | Enterobacterales | Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae |
| Gammaproteobacteria_Incertae_sedis_Incertae_sedis | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Gammaproteobacteria | Gammaproteobacteria_Incertae_sedis | Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Gammaproteobacteria_Incertae_sedis;Gammaproteobacteria_Incertae_sedis_Incertae_sedis |
| Moraxellaceae | 2 | 2 | Bacteria | Bacteria_none | Pseudomonadota | Gammaproteobacteria | Moraxellales | Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Moraxellales;Moraxellaceae |
| Pasteurellaceae | 2 | 2 | Bacteria | Bacteria_none | Pseudomonadota | Gammaproteobacteria | Pasteurellales | Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Pasteurellales;Pasteurellaceae |
| Pseudomonadaceae | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Gammaproteobacteria | Pseudomonadales | Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae |
| Hominidae | 41 | 44 | Eukaryota | Metazoa | Chordata | Mammalia | Primates | Eukaryota;Metazoa;Chordata;Mammalia;Primates;Hominidae |
| Unknown | 3850 | 3834 | Unclassified | Unknown | Unknown | Unknown | Unknown | Unclassified;Unknown;Unknown;Unknown;Unknown;Unknown |
| Caudoviricetes_Incertae_sedis_Incertae_sedis | 3 | 3 | Viruses | Heunggongvirae | Uroviricota | Caudoviricetes | Caudoviricetes_Incertae_sedis | Viruses;Heunggongvirae;Uroviricota;Caudoviricetes;Caudoviricetes_Incertae_sedis;Caudoviricetes_Incertae_sedis_Incertae_sedis |
Rarefied abundance table for the genus rank.
All samples have been randomly subsetted to have the same number of reads.
| genus | bc06 | total | superkingdom | kingdom | phylum | class | order | family | tax |
|---|---|---|---|---|---|---|---|---|---|
| Natronomonas | 1 | 1 | Archaea | Archaea_none | Euryarchaeota | Halobacteria | Halobacteriales | Haloarculaceae | Archaea;Archaea_none;Euryarchaeota;Halobacteria;Halobacteriales;Haloarculaceae;Natronomonas |
| Actinomyces | 1 | 1 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Actinomycetales | Actinomycetaceae | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Actinomyces |
| Bifidobacterium | 56984 | 56970 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bifidobacteriales | Bifidobacteriaceae | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium |
| Streptomyces | 3 | 3 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Kitasatosporales | Streptomycetaceae | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Kitasatosporales;Streptomycetaceae;Streptomyces |
| Microbacterium | 4 | 4 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Micrococcales | Microbacteriaceae | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Micrococcales;Microbacteriaceae;Microbacterium |
| Rothia | 2 | 2 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Micrococcales | Micrococcaceae | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Micrococcales;Micrococcaceae;Rothia |
| Corynebacterium | 0 | 1 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Mycobacteriales | Corynebacteriaceae | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Mycobacteriales;Corynebacteriaceae;Corynebacterium |
| Mycobacteroides | 1 | 1 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Mycobacteriales | Mycobacteriaceae | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Mycobacteroides |
| Rhodococcus | 13 | 13 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Mycobacteriales | Nocardiaceae | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Mycobacteriales;Nocardiaceae;Rhodococcus |
| Cutibacterium | 9 | 9 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Propionibacteriales | Propionibacteriaceae | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Cutibacterium |
| Nocardiopsis | 1 | 0 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Streptosporangiales | Nocardiopsaceae | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Streptosporangiales;Nocardiopsaceae;Nocardiopsis |
| Bacillus | 4 | 4 | Bacteria | Bacteria_none | Bacillota | Bacilli | Bacillales | Bacillaceae | Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus |
| Caldibacillus | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Bacillales | Bacillaceae | Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Bacillaceae;Caldibacillus |
| Parageobacillus | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Bacillales | Bacillaceae | Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Bacillaceae;Parageobacillus |
| Weizmannia | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Bacillales | Bacillaceae | Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Bacillaceae;Weizmannia |
| Listeria | 38 | 41 | Bacteria | Bacteria_none | Bacillota | Bacilli | Bacillales | Listeriaceae | Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Listeriaceae;Listeria |
| Solibacillus | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Bacillales | Planococcaceae | Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Planococcaceae;Solibacillus |
| Sporosarcina | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Bacillales | Planococcaceae | Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Planococcaceae;Sporosarcina |
| Staphylococcus | 2 | 2 | Bacteria | Bacteria_none | Bacillota | Bacilli | Bacillales | Staphylococcaceae | Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Staphylococcaceae;Staphylococcus |
| Carnobacterium | 0 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Carnobacteriaceae | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Carnobacterium |
| Enterococcus | 34 | 35 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Enterococcaceae | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus |
| Companilactobacillus | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus |
| Lacticaseibacillus | 16914 | 16871 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus |
| Lactiplantibacillus | 6911 | 6910 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus |
| Lactobacillus | 46097 | 46095 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus |
| Latilactobacillus | 2 | 2 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus |
| Lentilactobacillus | 13 | 12 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus |
| Leuconostoc | 5 | 6 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc |
| Levilactobacillus | 3 | 3 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus |
| Ligilactobacillus | 71 | 73 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Ligilactobacillus |
| Limosilactobacillus | 62 | 62 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus |
| Liquorilactobacillus | 2 | 2 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus |
| Pediococcus | 4 | 5 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus |
| Secundilactobacillus | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Secundilactobacillus |
| Weissella | 5 | 5 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella |
| Lactococcus | 17659 | 17709 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus |
| Streptococcus | 22491 | 22468 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus |
| Clostridium | 2 | 2 | Bacteria | Bacteria_none | Bacillota | Clostridia | Eubacteriales | Clostridiaceae | Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium |
| Clostridioides | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Clostridia | Eubacteriales | Peptostreptococcaceae | Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Peptostreptococcaceae;Clostridioides |
| Candidatus Bipolaricaulis | 0 | 1 | Bacteria | Bacteria_none | Candidatus Bipolaricaulota | Candidatus Bipolaricaulota_Incertae_sedis | Candidatus Bipolaricaulota_Incertae_sedis_Incertae_sedis | Candidatus Bipolaricaulota_Incertae_sedis_Incertae_sedis_Incertae_sedis | Bacteria;Bacteria_none;Candidatus Bipolaricaulota;Candidatus Bipolaricaulota_Incertae_sedis;Candidatus Bipolaricaulota_Incertae_sedis_Incertae_sedis;Candidatus Bipolaricaulota_Incertae_sedis_Incertae_sedis_Incertae_sedis;Candidatus Bipolaricaulis |
| Chlamydia | 1 | 1 | Bacteria | Bacteria_none | Chlamydiota | Chlamydiia | Chlamydiales | Chlamydiaceae | Bacteria;Bacteria_none;Chlamydiota;Chlamydiia;Chlamydiales;Chlamydiaceae;Chlamydia |
| Candidatus Phytoplasma | 1 | 1 | Bacteria | Bacteria_none | Mycoplasmatota | Mollicutes | Acholeplasmatales | Acholeplasmataceae | Bacteria;Bacteria_none;Mycoplasmatota;Mollicutes;Acholeplasmatales;Acholeplasmataceae;Candidatus Phytoplasma |
| Candidatus Hepatoplasma | 1 | 0 | Bacteria | Bacteria_none | Mycoplasmatota | Mollicutes | Mycoplasmatales | Mycoplasmataceae | Bacteria;Bacteria_none;Mycoplasmatota;Mollicutes;Mycoplasmatales;Mycoplasmataceae;Candidatus Hepatoplasma |
| Methylorubrum | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Hyphomicrobiales | Methylobacteriaceae | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Methylobacteriaceae;Methylorubrum |
| Afipia | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Hyphomicrobiales | Nitrobacteraceae | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Nitrobacteraceae;Afipia |
| Bradyrhizobium | 17 | 16 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Hyphomicrobiales | Nitrobacteraceae | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Nitrobacteraceae;Bradyrhizobium |
| Rhodopseudomonas | 3 | 3 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Hyphomicrobiales | Nitrobacteraceae | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Nitrobacteraceae;Rhodopseudomonas |
| Tardiphaga | 2 | 2 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Hyphomicrobiales | Nitrobacteraceae | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Nitrobacteraceae;Tardiphaga |
| Mesorhizobium | 20 | 21 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Hyphomicrobiales | Phyllobacteriaceae | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Phyllobacteriaceae;Mesorhizobium |
| Tistrella | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Rhodospirillales | Geminicoccaceae | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Rhodospirillales;Geminicoccaceae;Tistrella |
| Sphingomonas | 9 | 10 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Sphingomonadales | Sphingomonadaceae | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Sphingomonas |
| Cupriavidus | 49 | 49 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Burkholderiaceae | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Cupriavidus |
| Paraburkholderia | 2 | 2 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Burkholderiaceae | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Paraburkholderia |
| Ralstonia | 5 | 5 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Burkholderiaceae | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Ralstonia |
| Aquabacterium | 3 | 2 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Burkholderiales_Incertae_sedis | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Burkholderiales_Incertae_sedis;Aquabacterium |
| Hydrogenophaga | 2 | 2 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Comamonadaceae | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Comamonadaceae;Hydrogenophaga |
| Simplicispira | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Comamonadaceae | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Comamonadaceae;Simplicispira |
| Verminephrobacter | 1 | 0 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Comamonadaceae | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Comamonadaceae;Verminephrobacter |
| Aquincola | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Sphaerotilaceae | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Sphaerotilaceae;Aquincola |
| Ideonella | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Sphaerotilaceae | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Sphaerotilaceae;Ideonella |
| Paludibacterium | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Neisseriales | Chromobacteriaceae | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Neisseriales;Chromobacteriaceae;Paludibacterium |
| Shewanella | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Gammaproteobacteria | Alteromonadales | Shewanellaceae | Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Alteromonadales;Shewanellaceae;Shewanella |
| Cedecea | 2 | 2 | Bacteria | Bacteria_none | Pseudomonadota | Gammaproteobacteria | Enterobacterales | Enterobacteriaceae | Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Cedecea |
| Escherichia | 4 | 4 | Bacteria | Bacteria_none | Pseudomonadota | Gammaproteobacteria | Enterobacterales | Enterobacteriaceae | Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia |
| Klebsiella | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Gammaproteobacteria | Enterobacterales | Enterobacteriaceae | Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella |
| Gammaproteobacteria_Incertae_sedis_Incertae_sedis_Incertae_sedis | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Gammaproteobacteria | Gammaproteobacteria_Incertae_sedis | Gammaproteobacteria_Incertae_sedis_Incertae_sedis | Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Gammaproteobacteria_Incertae_sedis;Gammaproteobacteria_Incertae_sedis_Incertae_sedis;Gammaproteobacteria_Incertae_sedis_Incertae_sedis_Incertae_sedis |
| Acinetobacter | 2 | 2 | Bacteria | Bacteria_none | Pseudomonadota | Gammaproteobacteria | Moraxellales | Moraxellaceae | Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Moraxellales;Moraxellaceae;Acinetobacter |
| Pasteurella | 2 | 2 | Bacteria | Bacteria_none | Pseudomonadota | Gammaproteobacteria | Pasteurellales | Pasteurellaceae | Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Pasteurellales;Pasteurellaceae;Pasteurella |
| Pseudomonas | 1 | 0 | Bacteria | Bacteria_none | Pseudomonadota | Gammaproteobacteria | Pseudomonadales | Pseudomonadaceae | Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas |
| Homo | 44 | 41 | Eukaryota | Metazoa | Chordata | Mammalia | Primates | Hominidae | Eukaryota;Metazoa;Chordata;Mammalia;Primates;Hominidae;Homo |
| Unknown | 3820 | 3850 | Unclassified | Unknown | Unknown | Unknown | Unknown | Unknown | Unclassified;Unknown;Unknown;Unknown;Unknown;Unknown;Unknown |
| Ashduovirus | 1 | 1 | Viruses | Heunggongvirae | Uroviricota | Caudoviricetes | Caudoviricetes_Incertae_sedis | Caudoviricetes_Incertae_sedis_Incertae_sedis | Viruses;Heunggongvirae;Uroviricota;Caudoviricetes;Caudoviricetes_Incertae_sedis;Caudoviricetes_Incertae_sedis_Incertae_sedis;Ashduovirus |
| Caudoviricetes_Incertae_sedis_Incertae_sedis_Incertae_sedis | 2 | 2 | Viruses | Heunggongvirae | Uroviricota | Caudoviricetes | Caudoviricetes_Incertae_sedis | Caudoviricetes_Incertae_sedis_Incertae_sedis | Viruses;Heunggongvirae;Uroviricota;Caudoviricetes;Caudoviricetes_Incertae_sedis;Caudoviricetes_Incertae_sedis_Incertae_sedis;Caudoviricetes_Incertae_sedis_Incertae_sedis_Incertae_sedis |
Rarefied abundance table for the species rank.
All samples have been randomly subsetted to have the same number of reads.
| species | bc06 | total | superkingdom | kingdom | phylum | class | order | family | genus | tax |
|---|---|---|---|---|---|---|---|---|---|---|
| Natronomonas sp. ZY43 | 0 | 1 | Archaea | Archaea_none | Euryarchaeota | Halobacteria | Halobacteriales | Haloarculaceae | Natronomonas | Archaea;Archaea_none;Euryarchaeota;Halobacteria;Halobacteriales;Haloarculaceae;Natronomonas;Natronomonas sp. ZY43 |
| Actinomyces oris | 1 | 1 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Actinomycetales | Actinomycetaceae | Actinomyces | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Actinomyces;Actinomyces oris |
| Bifidobacterium actinocoloniiforme | 4 | 4 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bifidobacteriales | Bifidobacteriaceae | Bifidobacterium | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium actinocoloniiforme |
| Bifidobacterium adolescentis | 14 | 14 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bifidobacteriales | Bifidobacteriaceae | Bifidobacterium | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium adolescentis |
| Bifidobacterium angulatum | 7 | 3 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bifidobacteriales | Bifidobacteriaceae | Bifidobacterium | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium angulatum |
| Bifidobacterium animalis | 525 | 523 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bifidobacteriales | Bifidobacteriaceae | Bifidobacterium | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium animalis |
| Bifidobacterium asteroides | 5 | 5 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bifidobacteriales | Bifidobacteriaceae | Bifidobacterium | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium asteroides |
| Bifidobacterium bifidum | 529 | 530 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bifidobacteriales | Bifidobacteriaceae | Bifidobacterium | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium bifidum |
| Bifidobacterium breve | 17217 | 17224 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bifidobacteriales | Bifidobacteriaceae | Bifidobacterium | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium breve |
| Bifidobacterium catenulatum | 13 | 13 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bifidobacteriales | Bifidobacteriaceae | Bifidobacterium | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium catenulatum |
| Bifidobacterium choerinum | 5 | 5 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bifidobacteriales | Bifidobacteriaceae | Bifidobacterium | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium choerinum |
| Bifidobacterium coryneforme | 0 | 1 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bifidobacteriales | Bifidobacteriaceae | Bifidobacterium | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium coryneforme |
| Bifidobacterium dentium | 11 | 10 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bifidobacteriales | Bifidobacteriaceae | Bifidobacterium | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium dentium |
| Bifidobacterium eulemuris | 3 | 3 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bifidobacteriales | Bifidobacteriaceae | Bifidobacterium | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium eulemuris |
| Bifidobacterium imperatoris | 10 | 10 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bifidobacteriales | Bifidobacteriaceae | Bifidobacterium | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium imperatoris |
| Bifidobacterium lemurum | 1 | 1 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bifidobacteriales | Bifidobacteriaceae | Bifidobacterium | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium lemurum |
| Bifidobacterium longum | 35440 | 35417 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bifidobacteriales | Bifidobacteriaceae | Bifidobacterium | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium longum |
| Bifidobacterium pseudocatenulatum | 7 | 6 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bifidobacteriales | Bifidobacteriaceae | Bifidobacterium | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium pseudocatenulatum |
| Bifidobacterium pseudolongum | 9 | 8 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bifidobacteriales | Bifidobacteriaceae | Bifidobacterium | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium pseudolongum |
| Bifidobacterium pullorum | 6 | 6 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bifidobacteriales | Bifidobacteriaceae | Bifidobacterium | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium pullorum |
| Bifidobacterium saguini | 2 | 2 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bifidobacteriales | Bifidobacteriaceae | Bifidobacterium | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium saguini |
| Bifidobacterium scardovii | 11 | 12 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bifidobacteriales | Bifidobacteriaceae | Bifidobacterium | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium scardovii |
| Bifidobacterium sp. SKU | 2011 | 2016 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bifidobacteriales | Bifidobacteriaceae | Bifidobacterium | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium sp. SKU |
| Bifidobacterium sp. TKU | 1061 | 1052 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bifidobacteriales | Bifidobacteriaceae | Bifidobacterium | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium sp. TKU |
| Bifidobacterium subtile | 2 | 2 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bifidobacteriales | Bifidobacteriaceae | Bifidobacterium | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium subtile |
| Bifidobacterium thermophilum | 1 | 1 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Bifidobacteriales | Bifidobacteriaceae | Bifidobacterium | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium thermophilum |
| Streptomyces armeniacus | 1 | 1 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Kitasatosporales | Streptomycetaceae | Streptomyces | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Kitasatosporales;Streptomycetaceae;Streptomyces;Streptomyces armeniacus |
| Streptomyces sp. CdTB01 | 1 | 1 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Kitasatosporales | Streptomycetaceae | Streptomyces | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Kitasatosporales;Streptomycetaceae;Streptomyces;Streptomyces sp. CdTB01 |
| Streptomyces tirandamycinicus | 1 | 1 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Kitasatosporales | Streptomycetaceae | Streptomyces | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Kitasatosporales;Streptomycetaceae;Streptomyces;Streptomyces tirandamycinicus |
| Microbacterium sp. 4R-513 | 3 | 4 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Micrococcales | Microbacteriaceae | Microbacterium | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Micrococcales;Microbacteriaceae;Microbacterium;Microbacterium sp. 4R-513 |
| Rothia kristinae | 2 | 1 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Micrococcales | Micrococcaceae | Rothia | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Micrococcales;Micrococcaceae;Rothia;Rothia kristinae |
| Corynebacterium caspium | 1 | 1 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Mycobacteriales | Corynebacteriaceae | Corynebacterium | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Mycobacteriales;Corynebacteriaceae;Corynebacterium;Corynebacterium caspium |
| Mycobacteroides abscessus | 1 | 1 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Mycobacteriales | Mycobacteriaceae | Mycobacteroides | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Mycobacteroides;Mycobacteroides abscessus |
| Rhodococcus fascians | 11 | 13 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Mycobacteriales | Nocardiaceae | Rhodococcus | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Mycobacteriales;Nocardiaceae;Rhodococcus;Rhodococcus fascians |
| Cutibacterium acnes | 8 | 8 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Propionibacteriales | Propionibacteriaceae | Cutibacterium | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Cutibacterium;Cutibacterium acnes |
| Nocardiopsis exhalans | 1 | 1 | Bacteria | Bacteria_none | Actinomycetota | Actinomycetes | Streptosporangiales | Nocardiopsaceae | Nocardiopsis | Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Streptosporangiales;Nocardiopsaceae;Nocardiopsis;Nocardiopsis exhalans |
| Bacillus halotolerans | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Bacillales | Bacillaceae | Bacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus;Bacillus halotolerans |
| Bacillus thuringiensis | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Bacillales | Bacillaceae | Bacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus;Bacillus thuringiensis |
| Bacillus velezensis | 2 | 2 | Bacteria | Bacteria_none | Bacillota | Bacilli | Bacillales | Bacillaceae | Bacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus;Bacillus velezensis |
| Caldibacillus thermoamylovorans | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Bacillales | Bacillaceae | Caldibacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Bacillaceae;Caldibacillus;Caldibacillus thermoamylovorans |
| Parageobacillus thermoglucosidasius | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Bacillales | Bacillaceae | Parageobacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Bacillaceae;Parageobacillus;Parageobacillus thermoglucosidasius |
| Weizmannia coagulans | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Bacillales | Bacillaceae | Weizmannia | Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Bacillaceae;Weizmannia;Weizmannia coagulans |
| Listeria marthii | 35 | 36 | Bacteria | Bacteria_none | Bacillota | Bacilli | Bacillales | Listeriaceae | Listeria | Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Listeriaceae;Listeria;Listeria marthii |
| Listeria monocytogenes | 4 | 4 | Bacteria | Bacteria_none | Bacillota | Bacilli | Bacillales | Listeriaceae | Listeria | Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Listeriaceae;Listeria;Listeria monocytogenes |
| Solibacillus silvestris | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Bacillales | Planococcaceae | Solibacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Planococcaceae;Solibacillus;Solibacillus silvestris |
| Sporosarcina thermotolerans | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Bacillales | Planococcaceae | Sporosarcina | Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Planococcaceae;Sporosarcina;Sporosarcina thermotolerans |
| Staphylococcus aureus | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Bacillales | Staphylococcaceae | Staphylococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Staphylococcaceae;Staphylococcus;Staphylococcus aureus |
| Staphylococcus sp. M0911 | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Bacillales | Staphylococcaceae | Staphylococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Staphylococcaceae;Staphylococcus;Staphylococcus sp. M0911 |
| Carnobacterium viridans | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Carnobacteriaceae | Carnobacterium | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Carnobacterium;Carnobacterium viridans |
| Enterococcus casseliflavus | 2 | 2 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Enterococcaceae | Enterococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus casseliflavus |
| Enterococcus faecalis | 16 | 16 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Enterococcaceae | Enterococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus faecalis |
| Enterococcus faecium | 2 | 2 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Enterococcaceae | Enterococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus faecium |
| Enterococcus lactis | 15 | 15 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Enterococcaceae | Enterococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus lactis |
| Enterococcus sp. FDAARGOS_375 | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Enterococcaceae | Enterococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus sp. FDAARGOS_375 |
| Companilactobacillus alimentarius | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Companilactobacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus;Companilactobacillus alimentarius |
| Lacticaseibacillus casei | 11522 | 11506 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Lacticaseibacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus;Lacticaseibacillus casei |
| Lacticaseibacillus chiayiensis | 8 | 8 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Lacticaseibacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus;Lacticaseibacillus chiayiensis |
| Lacticaseibacillus paracasei | 102 | 96 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Lacticaseibacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus;Lacticaseibacillus paracasei |
| Lacticaseibacillus rhamnosus | 5232 | 5254 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Lacticaseibacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus;Lacticaseibacillus rhamnosus |
| Lacticaseibacillus zeae | 13 | 13 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Lacticaseibacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus;Lacticaseibacillus zeae |
| Lactiplantibacillus argentoratensis | 2 | 2 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Lactiplantibacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus;Lactiplantibacillus argentoratensis |
| Lactiplantibacillus paraplantarum | 3 | 3 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Lactiplantibacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus;Lactiplantibacillus paraplantarum |
| Lactiplantibacillus pentosus | 3 | 3 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Lactiplantibacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus;Lactiplantibacillus pentosus |
| Lactiplantibacillus plantarum | 6970 | 6922 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Lactiplantibacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus;Lactiplantibacillus plantarum |
| Lactobacillus acidophilus | 45955 | 45990 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Lactobacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus acidophilus |
| Lactobacillus amylolyticus | 2 | 2 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Lactobacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus amylolyticus |
| Lactobacillus amylovorus | 8 | 8 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Lactobacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus amylovorus |
| Lactobacillus apis | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Lactobacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus apis |
| Lactobacillus crispatus | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Lactobacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus crispatus |
| Lactobacillus delbrueckii | 98 | 104 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Lactobacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus delbrueckii |
| Lactobacillus helveticus | 33 | 31 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Lactobacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus helveticus |
| Lactobacillus johnsonii | 2 | 3 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Lactobacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus johnsonii |
| Lactobacillus kefiranofaciens | 3 | 2 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Lactobacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus kefiranofaciens |
| Lactobacillus taiwanensis | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Lactobacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus taiwanensis |
| Latilactobacillus curvatus | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Latilactobacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus;Latilactobacillus curvatus |
| Latilactobacillus sakei | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Latilactobacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus;Latilactobacillus sakei |
| Lentilactobacillus buchneri | 12 | 13 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Lentilactobacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus;Lentilactobacillus buchneri |
| Leuconostoc citreum | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Leuconostoc | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc;Leuconostoc citreum |
| Leuconostoc falkenbergense | 3 | 3 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Leuconostoc | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc;Leuconostoc falkenbergense |
| Leuconostoc mesenteroides | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Leuconostoc | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc;Leuconostoc mesenteroides |
| Leuconostoc pseudomesenteroides | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Leuconostoc | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc;Leuconostoc pseudomesenteroides |
| Levilactobacillus brevis | 3 | 3 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Levilactobacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus;Levilactobacillus brevis |
| Ligilactobacillus acidipiscis | 0 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Ligilactobacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Ligilactobacillus;Ligilactobacillus acidipiscis |
| Ligilactobacillus salivarius | 72 | 70 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Ligilactobacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Ligilactobacillus;Ligilactobacillus salivarius |
| Limosilactobacillus fermentum | 19 | 15 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Limosilactobacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus;Limosilactobacillus fermentum |
| Limosilactobacillus gastricus | 4 | 4 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Limosilactobacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus;Limosilactobacillus gastricus |
| Limosilactobacillus mucosae | 34 | 37 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Limosilactobacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus;Limosilactobacillus mucosae |
| Limosilactobacillus reuteri | 2 | 2 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Limosilactobacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus;Limosilactobacillus reuteri |
| Liquorilactobacillus nagelii | 2 | 2 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Liquorilactobacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus;Liquorilactobacillus nagelii |
| Pediococcus damnosus | 5 | 5 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Pediococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus;Pediococcus damnosus |
| Secundilactobacillus paracollinoides | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Secundilactobacillus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Secundilactobacillus;Secundilactobacillus paracollinoides |
| Weissella confusa | 3 | 3 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Weissella | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella;Weissella confusa |
| Weissella jogaejeotgali | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Weissella | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella;Weissella jogaejeotgali |
| Weissella paramesenteroides | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Weissella | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella;Weissella paramesenteroides |
| Lactococcus cremoris | 84 | 86 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Lactococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus;Lactococcus cremoris |
| Lactococcus garvieae | 2 | 2 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Lactococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus;Lactococcus garvieae |
| Lactococcus lactis | 17530 | 17503 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Lactococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus;Lactococcus lactis |
| Lactococcus protaetiae | 2 | 2 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Lactococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus;Lactococcus protaetiae |
| Lactococcus raffinolactis | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Lactococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus;Lactococcus raffinolactis |
| Lactococcus sp. NH2-7C | 19 | 18 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Lactococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus;Lactococcus sp. NH2-7C |
| Lactococcus taiwanensis | 34 | 34 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Lactococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus;Lactococcus taiwanensis |
| Streptococcus acidominimus | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus acidominimus |
| Streptococcus agalactiae | 84 | 85 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus agalactiae |
| Streptococcus anginosus | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus anginosus |
| Streptococcus dysgalactiae | 2 | 2 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus dysgalactiae |
| Streptococcus equinus | 3 | 3 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus equinus |
| Streptococcus infantis | 2 | 2 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus infantis |
| Streptococcus mitis | 2 | 2 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus mitis |
| Streptococcus oralis | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus oralis |
| Streptococcus parasuis | 5 | 5 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus parasuis |
| Streptococcus parauberis | 2 | 2 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus parauberis |
| Streptococcus pasteurianus | 10 | 11 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus pasteurianus |
| Streptococcus pneumoniae | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus pneumoniae |
| Streptococcus pyogenes | 5 | 5 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus pyogenes |
| Streptococcus salivarius | 9 | 10 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus salivarius |
| Streptococcus sanguinis | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus sanguinis |
| Streptococcus sp. zg-86 | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus sp. zg-86 |
| Streptococcus suis | 4 | 4 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus suis |
| Streptococcus thermophilus | 22389 | 22409 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus thermophilus |
| Streptococcus uberis | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus uberis |
| Streptococcus vestibularis | 1 | 2 | Bacteria | Bacteria_none | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus vestibularis |
| Clostridium beijerinckii | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Clostridia | Eubacteriales | Clostridiaceae | Clostridium | Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium beijerinckii |
| Clostridium perfringens | 2 | 2 | Bacteria | Bacteria_none | Bacillota | Clostridia | Eubacteriales | Clostridiaceae | Clostridium | Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium perfringens |
| Clostridioides difficile | 1 | 1 | Bacteria | Bacteria_none | Bacillota | Clostridia | Eubacteriales | Peptostreptococcaceae | Clostridioides | Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Peptostreptococcaceae;Clostridioides;Clostridioides difficile |
| Candidatus Bipolaricaulis anaerobius | 1 | 1 | Bacteria | Bacteria_none | Candidatus Bipolaricaulota | Candidatus Bipolaricaulota_Incertae_sedis | Candidatus Bipolaricaulota_Incertae_sedis_Incertae_sedis | Candidatus Bipolaricaulota_Incertae_sedis_Incertae_sedis_Incertae_sedis | Candidatus Bipolaricaulis | Bacteria;Bacteria_none;Candidatus Bipolaricaulota;Candidatus Bipolaricaulota_Incertae_sedis;Candidatus Bipolaricaulota_Incertae_sedis_Incertae_sedis;Candidatus Bipolaricaulota_Incertae_sedis_Incertae_sedis_Incertae_sedis;Candidatus Bipolaricaulis;Candidatus Bipolaricaulis anaerobius |
| Chlamydia trachomatis | 1 | 1 | Bacteria | Bacteria_none | Chlamydiota | Chlamydiia | Chlamydiales | Chlamydiaceae | Chlamydia | Bacteria;Bacteria_none;Chlamydiota;Chlamydiia;Chlamydiales;Chlamydiaceae;Chlamydia;Chlamydia trachomatis |
| Candidatus Phytoplasma mali | 1 | 1 | Bacteria | Bacteria_none | Mycoplasmatota | Mollicutes | Acholeplasmatales | Acholeplasmataceae | Candidatus Phytoplasma | Bacteria;Bacteria_none;Mycoplasmatota;Mollicutes;Acholeplasmatales;Acholeplasmataceae;Candidatus Phytoplasma;Candidatus Phytoplasma mali |
| Candidatus Hepatoplasma crinochetorum | 1 | 1 | Bacteria | Bacteria_none | Mycoplasmatota | Mollicutes | Mycoplasmatales | Mycoplasmataceae | Candidatus Hepatoplasma | Bacteria;Bacteria_none;Mycoplasmatota;Mollicutes;Mycoplasmatales;Mycoplasmataceae;Candidatus Hepatoplasma;Candidatus Hepatoplasma crinochetorum |
| Methylorubrum sp. B1-46 | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Hyphomicrobiales | Methylobacteriaceae | Methylorubrum | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Methylobacteriaceae;Methylorubrum;Methylorubrum sp. B1-46 |
| [Pseudomonas] carboxydohydrogena | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Hyphomicrobiales | Nitrobacteraceae | Afipia | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Nitrobacteraceae;Afipia;[Pseudomonas] carboxydohydrogena |
| Bradyrhizobium canariense | 3 | 3 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Hyphomicrobiales | Nitrobacteraceae | Bradyrhizobium | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Nitrobacteraceae;Bradyrhizobium;Bradyrhizobium canariense |
| Bradyrhizobium elkanii | 2 | 2 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Hyphomicrobiales | Nitrobacteraceae | Bradyrhizobium | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Nitrobacteraceae;Bradyrhizobium;Bradyrhizobium elkanii |
| Bradyrhizobium sp. 191 | 3 | 3 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Hyphomicrobiales | Nitrobacteraceae | Bradyrhizobium | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Nitrobacteraceae;Bradyrhizobium;Bradyrhizobium sp. 191 |
| Bradyrhizobium sp. BTAi1 | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Hyphomicrobiales | Nitrobacteraceae | Bradyrhizobium | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Nitrobacteraceae;Bradyrhizobium;Bradyrhizobium sp. BTAi1 |
| Bradyrhizobium sp. CB1024 | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Hyphomicrobiales | Nitrobacteraceae | Bradyrhizobium | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Nitrobacteraceae;Bradyrhizobium;Bradyrhizobium sp. CB1024 |
| Bradyrhizobium sp. CCBAU 051011 | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Hyphomicrobiales | Nitrobacteraceae | Bradyrhizobium | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Nitrobacteraceae;Bradyrhizobium;Bradyrhizobium sp. CCBAU 051011 |
| Bradyrhizobium sp. CIAT3101 | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Hyphomicrobiales | Nitrobacteraceae | Bradyrhizobium | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Nitrobacteraceae;Bradyrhizobium;Bradyrhizobium sp. CIAT3101 |
| Bradyrhizobium sp. SK17 | 3 | 4 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Hyphomicrobiales | Nitrobacteraceae | Bradyrhizobium | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Nitrobacteraceae;Bradyrhizobium;Bradyrhizobium sp. SK17 |
| Bradyrhizobium symbiodeficiens | 2 | 2 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Hyphomicrobiales | Nitrobacteraceae | Bradyrhizobium | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Nitrobacteraceae;Bradyrhizobium;Bradyrhizobium symbiodeficiens |
| Rhodopseudomonas palustris | 2 | 2 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Hyphomicrobiales | Nitrobacteraceae | Rhodopseudomonas | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Nitrobacteraceae;Rhodopseudomonas;Rhodopseudomonas palustris |
| Rhodopseudomonas sp. SK50-23 | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Hyphomicrobiales | Nitrobacteraceae | Rhodopseudomonas | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Nitrobacteraceae;Rhodopseudomonas;Rhodopseudomonas sp. SK50-23 |
| Tardiphaga sp. 37S4 | 1 | 2 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Hyphomicrobiales | Nitrobacteraceae | Tardiphaga | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Nitrobacteraceae;Tardiphaga;Tardiphaga sp. 37S4 |
| Mesorhizobium sp. B2-8-5 | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Hyphomicrobiales | Phyllobacteriaceae | Mesorhizobium | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Phyllobacteriaceae;Mesorhizobium;Mesorhizobium sp. B2-8-5 |
| Mesorhizobium sp. M1A.F.Ca.IN.022.06.1.1 | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Hyphomicrobiales | Phyllobacteriaceae | Mesorhizobium | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Phyllobacteriaceae;Mesorhizobium;Mesorhizobium sp. M1A.F.Ca.IN.022.06.1.1 |
| Mesorhizobium terrae | 20 | 18 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Hyphomicrobiales | Phyllobacteriaceae | Mesorhizobium | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Phyllobacteriaceae;Mesorhizobium;Mesorhizobium terrae |
| Tistrella mobilis | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Rhodospirillales | Geminicoccaceae | Tistrella | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Rhodospirillales;Geminicoccaceae;Tistrella;Tistrella mobilis |
| Sphingomonas melonis | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Sphingomonadales | Sphingomonadaceae | Sphingomonas | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Sphingomonas;Sphingomonas melonis |
| Sphingomonas panacisoli | 0 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Sphingomonadales | Sphingomonadaceae | Sphingomonas | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Sphingomonas;Sphingomonas panacisoli |
| Sphingomonas sp. NIBR 02145 | 7 | 5 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Sphingomonadales | Sphingomonadaceae | Sphingomonas | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Sphingomonas;Sphingomonas sp. NIBR 02145 |
| Sphingomonas sp. R1 | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Alphaproteobacteria | Sphingomonadales | Sphingomonadaceae | Sphingomonas | Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Sphingomonas;Sphingomonas sp. R1 |
| Cupriavidus metallidurans | 22 | 26 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Burkholderiaceae | Cupriavidus | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Cupriavidus;Cupriavidus metallidurans |
| Cupriavidus necator | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Burkholderiaceae | Cupriavidus | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Cupriavidus;Cupriavidus necator |
| Cupriavidus oxalaticus | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Burkholderiaceae | Cupriavidus | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Cupriavidus;Cupriavidus oxalaticus |
| Cupriavidus pauculus | 13 | 13 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Burkholderiaceae | Cupriavidus | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Cupriavidus;Cupriavidus pauculus |
| Cupriavidus pinatubonensis | 0 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Burkholderiaceae | Cupriavidus | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Cupriavidus;Cupriavidus pinatubonensis |
| Cupriavidus sp. EM10 | 5 | 6 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Burkholderiaceae | Cupriavidus | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Cupriavidus;Cupriavidus sp. EM10 |
| Paraburkholderia ginsengisoli | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Burkholderiaceae | Paraburkholderia | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Paraburkholderia;Paraburkholderia ginsengisoli |
| Paraburkholderia xenovorans | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Burkholderiaceae | Paraburkholderia | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Paraburkholderia;Paraburkholderia xenovorans |
| Ralstonia insidiosa | 4 | 4 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Burkholderiaceae | Ralstonia | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Ralstonia;Ralstonia insidiosa |
| Ralstonia wenshanensis | 0 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Burkholderiaceae | Ralstonia | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Ralstonia;Ralstonia wenshanensis |
| Aquabacterium olei | 3 | 3 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Burkholderiales_Incertae_sedis | Aquabacterium | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Burkholderiales_Incertae_sedis;Aquabacterium;Aquabacterium olei |
| Hydrogenophaga sp. PAMC20947 | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Comamonadaceae | Hydrogenophaga | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Comamonadaceae;Hydrogenophaga;Hydrogenophaga sp. PAMC20947 |
| Hydrogenophaga sp. YM1 | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Comamonadaceae | Hydrogenophaga | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Comamonadaceae;Hydrogenophaga;Hydrogenophaga sp. YM1 |
| Simplicispira suum | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Comamonadaceae | Simplicispira | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Comamonadaceae;Simplicispira;Simplicispira suum |
| Verminephrobacter eiseniae | 0 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Comamonadaceae | Verminephrobacter | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Comamonadaceae;Verminephrobacter;Verminephrobacter eiseniae |
| Aquincola tertiaricarbonis | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Sphaerotilaceae | Aquincola | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Sphaerotilaceae;Aquincola;Aquincola tertiaricarbonis |
| Ideonella dechloratans | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Burkholderiales | Sphaerotilaceae | Ideonella | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Sphaerotilaceae;Ideonella;Ideonella dechloratans |
| Paludibacterium paludis | 0 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Betaproteobacteria | Neisseriales | Chromobacteriaceae | Paludibacterium | Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Neisseriales;Chromobacteriaceae;Paludibacterium;Paludibacterium paludis |
| Shewanella sp. ANA-3 | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Gammaproteobacteria | Alteromonadales | Shewanellaceae | Shewanella | Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Alteromonadales;Shewanellaceae;Shewanella;Shewanella sp. ANA-3 |
| Cedecea neteri | 2 | 2 | Bacteria | Bacteria_none | Pseudomonadota | Gammaproteobacteria | Enterobacterales | Enterobacteriaceae | Cedecea | Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Cedecea;Cedecea neteri |
| Escherichia coli | 3 | 4 | Bacteria | Bacteria_none | Pseudomonadota | Gammaproteobacteria | Enterobacterales | Enterobacteriaceae | Escherichia | Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia;Escherichia coli |
| Klebsiella pneumoniae | 1 | 0 | Bacteria | Bacteria_none | Pseudomonadota | Gammaproteobacteria | Enterobacterales | Enterobacteriaceae | Klebsiella | Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella;Klebsiella pneumoniae |
| Bathymodiolus septemdierum thioautotrophic gill symbiont | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Gammaproteobacteria | Gammaproteobacteria_Incertae_sedis | Gammaproteobacteria_Incertae_sedis_Incertae_sedis | Gammaproteobacteria_Incertae_sedis_Incertae_sedis_Incertae_sedis | Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Gammaproteobacteria_Incertae_sedis;Gammaproteobacteria_Incertae_sedis_Incertae_sedis;Gammaproteobacteria_Incertae_sedis_Incertae_sedis_Incertae_sedis;Bathymodiolus septemdierum thioautotrophic gill symbiont |
| Acinetobacter junii | 2 | 2 | Bacteria | Bacteria_none | Pseudomonadota | Gammaproteobacteria | Moraxellales | Moraxellaceae | Acinetobacter | Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Moraxellales;Moraxellaceae;Acinetobacter;Acinetobacter junii |
| Pasteurella multocida | 2 | 2 | Bacteria | Bacteria_none | Pseudomonadota | Gammaproteobacteria | Pasteurellales | Pasteurellaceae | Pasteurella | Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Pasteurellales;Pasteurellaceae;Pasteurella;Pasteurella multocida |
| Pseudomonas syringae group genomosp. 7 | 1 | 1 | Bacteria | Bacteria_none | Pseudomonadota | Gammaproteobacteria | Pseudomonadales | Pseudomonadaceae | Pseudomonas | Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas;Pseudomonas syringae group genomosp. 7 |
| Homo sapiens | 42 | 43 | Eukaryota | Metazoa | Chordata | Mammalia | Primates | Hominidae | Homo | Eukaryota;Metazoa;Chordata;Mammalia;Primates;Hominidae;Homo;Homo sapiens |
| Unknown | 3837 | 3862 | Unclassified | Unknown | Unknown | Unknown | Unknown | Unknown | Unknown | Unclassified;Unknown;Unknown;Unknown;Unknown;Unknown;Unknown;Unknown |
| Ashduovirus A2 | 1 | 1 | Viruses | Heunggongvirae | Uroviricota | Caudoviricetes | Caudoviricetes_Incertae_sedis | Caudoviricetes_Incertae_sedis_Incertae_sedis | Ashduovirus | Viruses;Heunggongvirae;Uroviricota;Caudoviricetes;Caudoviricetes_Incertae_sedis;Caudoviricetes_Incertae_sedis_Incertae_sedis;Ashduovirus;Ashduovirus A2 |
| Lactococcus phage Tuc2009 | 2 | 2 | Viruses | Heunggongvirae | Uroviricota | Caudoviricetes | Caudoviricetes_Incertae_sedis | Caudoviricetes_Incertae_sedis_Incertae_sedis | Caudoviricetes_Incertae_sedis_Incertae_sedis_Incertae_sedis | Viruses;Heunggongvirae;Uroviricota;Caudoviricetes;Caudoviricetes_Incertae_sedis;Caudoviricetes_Incertae_sedis_Incertae_sedis;Caudoviricetes_Incertae_sedis_Incertae_sedis_Incertae_sedis;Lactococcus phage Tuc2009 |
Alpha Diversity
Sample diversity indices. Indices are calculated from the original abundance table.
| Indices | bc06 | total |
|---|---|---|
| Berger Parker index | 0.27 | 0.27 |
| Effective number of species | 8.09 | 8.09 |
| Fisher's alpha | 19.74 | 19.74 |
| Inverse Simpson's index | 1.19 | 1.19 |
| Pielou's evenness | 0.4 | 0.4 |
| Richness | 180.0 | 180.0 |
| Shannon diversity index | 2.09 | 2.09 |
| Simpson's index | 0.84 | 0.84 |
| Total counts | 180369.0 | 180369.0 |
Sample-based rarefaction curves to display observed taxa richness. Sample size shows the number of reads sampled from the total amount of reads analyzed during the real time analysis. The Y-axis indicates the number of unique taxa at the last analyzed taxonomic rank in those subsampled reads.
This plot includes all the counts (except Unknown),
previous to apply any filter threshold based on abundances.