0.75 6870 6870 U 0 unclassified 99.25 909895 25 R 1 root 99.25 909860 13 R1 131567 cellular organisms 99.23 909743 3554 D 2 Bacteria 97.81 896694 405 D1 1783272 Terrabacteria group 56.44 517465 9 P 1239 Bacillota 56.44 517388 130 C 91061 Bacilli 56.41 517139 291 O 186826 Lactobacillales 50.45 462475 807 F 33958 Lactobacillaceae 30.43 278997 2030 G 1578 Lactobacillus 30.19 276759 276300 S 1579 Lactobacillus acidophilus 0.05 435 435 S1 272621 Lactobacillus acidophilus NCFM 0.00 24 24 S1 1314884 Lactobacillus acidophilus La-14 0.01 68 60 S 1587 Lactobacillus helveticus 0.00 7 7 S1 880633 Lactobacillus helveticus R0052 0.00 1 1 S1 326425 Lactobacillus helveticus CNRZ32 0.00 25 24 S 33959 Lactobacillus johnsonii 0.00 1 1 S1 633699 Lactobacillus johnsonii FI9785 0.00 20 15 S 1604 Lactobacillus amylovorus 0.00 3 3 S1 1423723 Lactobacillus amylovorus DSM 20531 0.00 2 2 S1 695562 Lactobacillus amylovorus GRL1118 0.00 15 15 S 267818 Lactobacillus kefiranofaciens 0.00 15 15 S 47770 Lactobacillus crispatus 0.00 12 4 S 1584 Lactobacillus delbrueckii 0.00 4 4 S1 29397 Lactobacillus delbrueckii subsp. lactis 0.00 3 3 S1 1585 Lactobacillus delbrueckii subsp. bulgaricus 0.00 1 1 S1 83684 Lactobacillus delbrueckii subsp. delbrueckii 0.00 11 4 G1 2620435 unclassified Lactobacillus 0.00 3 3 S 2993455 Lactobacillus sp. AMBV1719 0.00 1 1 S 2983232 Lactobacillus sp. ESL0785 0.00 1 1 S 2594496 Lactobacillus sp. PV037 0.00 1 1 S 2983210 Lactobacillus sp. ESL0680 0.00 1 1 S 2879107 Lactobacillus sp. IBH004 0.00 7 7 S 227945 Lactobacillus ultunensis 0.00 7 7 S 508451 Lactobacillus taiwanensis 0.00 6 6 S 151781 Lactobacillus intestinalis 0.00 6 6 S 2012495 Lactobacillus panisapium 0.00 4 4 S 83683 Lactobacillus amylolyticus 0.00 4 4 S 1600 Lactobacillus acetotolerans 0.00 3 3 S 147802 Lactobacillus iners 0.00 3 3 S 1218493 Lactobacillus kullabergensis 0.00 2 2 S 109790 Lactobacillus jensenii 19.88 182228 3087 G 2759736 Lacticaseibacillus 19.51 178896 178610 S 47715 Lacticaseibacillus rhamnosus 0.01 126 126 S1 568704 Lacticaseibacillus rhamnosus Lc 705 0.01 88 88 S1 1088720 Lacticaseibacillus rhamnosus ATCC 8530 0.00 30 30 S1 568703 Lacticaseibacillus rhamnosus GG 0.00 17 17 S1 1316933 Lacticaseibacillus rhamnosus LOCK900 0.00 17 17 S1 1318634 Lacticaseibacillus rhamnosus LOCK908 0.00 8 8 S1 1380361 Lacticaseibacillus rhamnosus DSM 14870 0.02 208 185 S 1597 Lacticaseibacillus paracasei 0.00 15 15 S1 113557 Lacticaseibacillus paracasei subsp. tolerans 0.00 4 3 S1 47714 Lacticaseibacillus paracasei subsp. paracasei 0.00 1 1 S2 537973 Lacticaseibacillus paracasei subsp. paracasei 8700:2 0.00 3 3 S1 1446494 Lacticaseibacillus paracasei N1115 0.00 1 1 S1 321967 Lacticaseibacillus paracasei ATCC 334 0.00 16 15 S 1582 Lacticaseibacillus casei 0.00 1 1 S1 1423732 Lacticaseibacillus casei DSM 20011 = JCM 1134 = ATCC 393 0.00 7 7 S 57037 Lacticaseibacillus zeae 0.00 6 3 G1 2759744 unclassified Lacticaseibacillus 0.00 2 2 S 3068307 Lacticaseibacillus sp. NCIMB 15474 0.00 1 1 S 3025672 Lacticaseibacillus sp. KACC 23028 0.00 5 5 S 2100821 Lacticaseibacillus chiayiensis 0.00 2 2 S 88233 Lacticaseibacillus manihotivorans 0.00 1 1 S 171523 Lacticaseibacillus pantheris 0.03 312 45 G 2767842 Lactiplantibacillus 0.03 262 249 S 1590 Lactiplantibacillus plantarum 0.00 12 12 S1 337330 Lactiplantibacillus plantarum subsp. plantarum 0.00 1 1 S1 1327988 Lactiplantibacillus plantarum 16 0.00 3 3 S 1589 Lactiplantibacillus pentosus 0.00 1 1 S 60520 Lactiplantibacillus paraplantarum 0.00 1 1 S 271881 Lactiplantibacillus argentoratensis 0.01 79 0 G 2767887 Ligilactobacillus 0.01 77 76 S 1624 Ligilactobacillus salivarius 0.00 1 1 S1 712961 Ligilactobacillus salivarius CECT 5713 0.00 1 0 S 1623 Ligilactobacillus ruminis 0.00 1 1 S1 1069534 Ligilactobacillus ruminis ATCC 27782 0.00 1 0 G1 2767920 unclassified Ligilactobacillus 0.00 1 1 S 3050131 Ligilactobacillus sp. BD7642 0.00 18 0 G 2767893 Lentilactobacillus 0.00 18 18 S 1581 Lentilactobacillus buchneri 0.00 10 0 G 2742598 Limosilactobacillus 0.00 6 6 S 1613 Limosilactobacillus fermentum 0.00 3 2 S 1598 Limosilactobacillus reuteri 0.00 1 1 S1 1358027 Limosilactobacillus reuteri TD1 0.00 1 1 S 47493 Limosilactobacillus panis 0.00 6 0 G 2767885 Latilactobacillus 0.00 3 3 S 1599 Latilactobacillus sakei 0.00 3 3 S 28038 Latilactobacillus curvatus 0.00 4 0 G 1243 Leuconostoc 0.00 2 2 S 2766470 Leuconostoc falkenbergense 0.00 1 1 S 1252 Leuconostoc carnosum 0.00 1 1 S 255248 Leuconostoc garlicum 0.00 3 0 G 46255 Weissella 0.00 1 1 S 1249 Weissella paramesenteroides 0.00 1 1 S 165096 Weissella koreensis 0.00 1 1 S 2714949 Weissella coleopterorum 0.00 3 0 G 2767889 Loigolactobacillus 0.00 2 2 S 1607 Loigolactobacillus bifermentans 0.00 1 0 S 1610 Loigolactobacillus coryniformis 0.00 1 0 S1 115542 Loigolactobacillus coryniformis subsp. torquens 0.00 1 1 S2 1423822 Loigolactobacillus coryniformis subsp. torquens DSM 20004 = KCTC 3535 0.00 2 0 G 1253 Pediococcus 0.00 1 1 S 1255 Pediococcus pentosaceus 0.00 1 0 G1 1670797 Pediococcus acidilactici group 0.00 1 1 S 1254 Pediococcus acidilactici 0.00 2 0 G 2767890 Paucilactobacillus 0.00 2 0 S 293371 Paucilactobacillus oligofermentans 0.00 2 2 S1 1423778 Paucilactobacillus oligofermentans DSM 15707 = LMG 22743 0.00 1 0 G 2767879 Companilactobacillus 0.00 1 1 S 2714036 Companilactobacillus pabuli 0.00 1 0 G 2767892 Secundilactobacillus 0.00 1 1 S 240427 Secundilactobacillus paracollinoides 0.00 1 0 G 2767874 Acetilactobacillus 0.00 1 1 S 1720083 Acetilactobacillus jinshanensis 0.00 1 0 G 2767888 Liquorilactobacillus 0.00 1 0 S 468911 Liquorilactobacillus hordei 0.00 1 1 S1 1423759 Liquorilactobacillus hordei DSM 19519 5.93 54355 191 F 1300 Streptococcaceae 5.90 54120 1796 G 1301 Streptococcus 5.69 52185 51438 S 1308 Streptococcus thermophilus 0.02 183 183 S1 1435974 Streptococcus thermophilus TH982 0.02 145 145 S1 1435981 Streptococcus thermophilus 1F8CT 0.01 130 130 S1 1433289 Streptococcus thermophilus M17PTZA496 0.01 65 65 S1 1435972 Streptococcus thermophilus TH985 0.00 38 38 S1 1423145 Streptococcus thermophilus TH1436 0.00 36 36 S1 1433288 Streptococcus thermophilus MTH17CL396 0.00 34 34 S1 1408178 Streptococcus thermophilus ASCC 1275 0.00 32 32 S1 264199 Streptococcus thermophilus LMG 18311 0.00 26 26 S1 1051074 Streptococcus thermophilus JIM 8232 0.00 25 25 S1 1436725 Streptococcus thermophilus TH1477 0.00 17 17 S1 322159 Streptococcus thermophilus LMD-9 0.00 6 6 S1 299768 Streptococcus thermophilus CNRZ1066 0.00 4 4 S1 767463 Streptococcus thermophilus ND03 0.00 3 3 S1 1187956 Streptococcus thermophilus MN-ZLW-002 0.00 3 3 S1 1415776 Streptococcus thermophilus TH1435 0.00 40 37 S 1304 Streptococcus salivarius 0.00 3 3 S1 347253 Streptococcus salivarius JIM8777 0.00 14 10 S 1307 Streptococcus suis 0.00 3 3 S1 1276647 Streptococcus suis TL13 0.00 1 1 S1 945704 Streptococcus suis JS14 0.00 9 9 S 1501662 Streptococcus parasuis 0.00 8 8 S 28037 Streptococcus mitis 0.00 8 0 G1 2608887 unclassified Streptococcus 0.00 3 3 S 2664091 Streptococcus sp. zg-86 0.00 2 2 S 1839799 Streptococcus sp. FDAARGOS_192 0.00 2 2 S 2420310 Streptococcus sp. FDAARGOS_522 0.00 1 1 S 2598457 Streptococcus sp. KS 6 0.00 7 7 S 1343 Streptococcus vestibularis 0.00 6 6 S 197614 Streptococcus pasteurianus 0.00 6 6 S 1335 Streptococcus equinus 0.00 5 5 S 1314 Streptococcus pyogenes 0.00 5 4 S 315405 Streptococcus gallolyticus 0.00 1 0 S1 53354 Streptococcus gallolyticus subsp. gallolyticus 0.00 1 1 S2 545774 Streptococcus gallolyticus subsp. gallolyticus TX20005 0.00 5 0 G1 671232 Streptococcus anginosus group 0.00 4 4 S 1328 Streptococcus anginosus 0.00 1 1 S 76860 Streptococcus constellatus 0.00 5 5 S 82348 Streptococcus pluranimalium 0.00 4 4 S 68892 Streptococcus infantis 0.00 2 2 S 2021971 Streptococcus respiraculi 0.00 2 2 S 1346 Streptococcus iniae 0.00 2 0 G1 119603 Streptococcus dysgalactiae group 0.00 1 1 S 1334 Streptococcus dysgalactiae 0.00 1 0 S 1336 Streptococcus equi 0.00 1 1 S1 40041 Streptococcus equi subsp. zooepidemicus 0.00 2 2 S 1313 Streptococcus pneumoniae 0.00 1 1 S 1811193 Streptococcus pantholopis 0.00 1 1 S 1349 Streptococcus uberis 0.00 1 1 S 149016 Streptococcus urinalis 0.00 1 1 S 1825069 Streptococcus marmotae 0.00 1 1 S 400065 Streptococcus merionis 0.00 1 1 S 1305 Streptococcus sanguinis 0.00 1 1 S 1341 Streptococcus ratti 0.00 1 0 S 1311 Streptococcus agalactiae 0.00 1 1 S1 1309807 Streptococcus agalactiae ILRI005 0.00 1 0 S 1318 Streptococcus parasanguinis 0.00 1 1 S1 760570 Streptococcus parasanguinis ATCC 15912 0.00 44 10 G 1357 Lactococcus 0.00 33 25 S 1358 Lactococcus lactis 0.00 8 7 S1 1360 Lactococcus lactis subsp. lactis 0.00 1 1 S2 1046624 Lactococcus lactis subsp. lactis IO-1 0.00 1 1 S 1359 Lactococcus cremoris 0.00 13 0 F 81852 Enterococcaceae 0.00 8 1 G 1350 Enterococcus 0.00 4 4 S 1352 Enterococcus faecium 0.00 2 2 S 1351 Enterococcus faecalis 0.00 1 1 S 53346 Enterococcus mundtii 0.00 3 0 G 2737 Vagococcus 0.00 3 3 S 2714947 Vagococcus hydrophili 0.00 2 0 G 51668 Tetragenococcus 0.00 2 2 S 51669 Tetragenococcus halophilus 0.00 5 0 F 186828 Carnobacteriaceae 0.00 5 5 G 1470540 Jeotgalibaca 0.01 119 8 O 1385 Bacillales 0.01 81 12 F 186817 Bacillaceae 0.00 24 2 G 1386 Bacillus 0.00 13 0 G1 86661 Bacillus cereus group 0.00 11 10 S 1428 Bacillus thuringiensis 0.00 1 1 S1 1444 Bacillus thuringiensis serovar tenebrionis 0.00 2 0 S 1396 Bacillus cereus 0.00 2 2 S1 1003239 Bacillus cereus C1L 0.00 7 0 G1 653685 Bacillus subtilis group 0.00 6 0 G2 1938374 Bacillus amyloliquefaciens group 0.00 3 2 S 1390 Bacillus amyloliquefaciens 0.00 1 1 S1 1034836 Bacillus amyloliquefaciens XH7 0.00 3 3 S 492670 Bacillus velezensis 0.00 1 1 S 1452 Bacillus atrophaeus 0.00 2 2 S 86663 Bacillus carboniphilus 0.00 23 2 G 150247 Anoxybacillus 0.00 18 15 S 33934 Anoxybacillus flavithermus 0.00 3 3 S1 491915 Anoxybacillus flavithermus WK1 0.00 2 2 S 198467 Anoxybacillus gonensis 0.00 1 1 S 294699 Anoxybacillus amylolyticus 0.00 7 0 G 1906945 Parageobacillus 0.00 6 4 S 1426 Parageobacillus thermoglucosidasius 0.00 1 1 S1 634956 Parageobacillus thermoglucosidasius C56-YS93 0.00 1 1 S1 1136178 Parageobacillus thermoglucosidasius TNO-09.020 0.00 1 1 S 153151 Parageobacillus toebii 0.00 7 2 G 129337 Geobacillus 0.00 2 2 S 129338 Geobacillus subterraneus 0.00 1 1 S 1422 Geobacillus stearothermophilus 0.00 1 0 G1 1505648 Geobacillus thermoleovorans group 0.00 1 1 S 1394 [Bacillus] caldolyticus 0.00 1 1 G1 2642459 unclassified Geobacillus 0.00 2 0 G 175304 Lentibacillus 0.00 2 0 G1 2614679 unclassified Lentibacillus 0.00 2 2 S 2518176 Lentibacillus sp. CBA3610 0.00 1 0 G 2675232 Neobacillus 0.00 1 0 G1 2675272 unclassified Neobacillus 0.00 1 1 S 3070680 Neobacillus sp. OS1-2 0.00 1 0 G 2675233 Metabacillus 0.00 1 1 S 1535204 Metabacillus endolithicus 0.00 1 0 G 2800373 Priestia 0.00 1 0 S 1404 Priestia megaterium 0.00 1 1 S1 1006007 Priestia megaterium WSH-002 0.00 1 0 G 2837508 Rossellomorea 0.00 1 1 S 189381 Rossellomorea marisflavi 0.00 1 0 G 2893058 Pseudalkalibacillus 0.00 1 1 S 208199 Pseudalkalibacillus hwajinpoensis 0.00 1 0 G 84406 Virgibacillus 0.00 1 0 G1 2620237 unclassified Virgibacillus 0.00 1 1 S 2831673 Virgibacillus sp. NKC19-16 0.00 17 0 F 186823 Alicyclobacillaceae 0.00 17 0 G 29330 Alicyclobacillus 0.00 17 0 S 405212 Alicyclobacillus acidocaldarius 0.00 17 2 S1 1388 Alicyclobacillus acidocaldarius subsp. acidocaldarius 0.00 13 13 S2 521098 Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 0.00 2 2 S2 1048834 Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1 0.00 5 0 F 90964 Staphylococcaceae 0.00 5 1 G 1279 Staphylococcus 0.00 2 2 S 1280 Staphylococcus aureus 0.00 1 0 G1 2815305 Staphylococcus intermedius group 0.00 1 1 S 283734 Staphylococcus pseudintermedius 0.00 1 1 S 46127 Staphylococcus felis 0.00 4 0 F 186818 Planococcaceae 0.00 3 0 G 648800 Solibacillus 0.00 3 0 S 76853 Solibacillus silvestris 0.00 3 3 S1 1002809 Solibacillus silvestris StLB046 0.00 1 0 G 1569 Sporosarcina 0.00 1 1 S 298596 Sporosarcina ureilytica 0.00 4 0 F 186822 Paenibacillaceae 0.00 4 0 G 44249 Paenibacillus 0.00 1 1 S 682956 Paenibacillus jilunlii 0.00 1 1 S 130049 Paenibacillus dendritiformis 0.00 1 1 S 79263 Paenibacillus chitinolyticus 0.00 1 1 S 189426 Paenibacillus odorifer 0.01 65 0 C 186801 Clostridia 0.01 61 2 O 186802 Eubacteriales 0.01 46 0 F 31979 Clostridiaceae 0.01 46 0 G 1485 Clostridium 0.00 44 44 S 1491 Clostridium botulinum 0.00 1 1 S 2320868 Clostridium manihotivorum 0.00 1 1 S 94869 Clostridium gasigenes 0.00 4 0 F 186803 Lachnospiraceae 0.00 2 0 G 841 Roseburia 0.00 1 0 S 166486 Roseburia intestinalis 0.00 1 1 S1 657315 Roseburia intestinalis M50/1 0.00 1 1 S 301301 Roseburia hominis 0.00 1 0 G 572511 Blautia 0.00 1 0 S 418240 Blautia wexlerae 0.00 1 1 S1 1121115 Blautia wexlerae DSM 19850 0.00 1 0 G 830 Butyrivibrio 0.00 1 0 S 43305 Butyrivibrio proteoclasticus 0.00 1 1 S1 515622 Butyrivibrio proteoclasticus B316 0.00 4 0 F 186804 Peptostreptococcaceae 0.00 2 0 G 1870884 Clostridioides 0.00 2 1 S 1496 Clostridioides difficile 0.00 1 1 S1 645462 Clostridioides difficile CD196 0.00 1 0 G 1257 Peptostreptococcus 0.00 1 0 G1 2652281 unclassified Peptostreptococcus 0.00 1 1 S 3003601 Peptostreptococcus sp. CBA3647 0.00 1 0 G 2743582 Peptacetobacter 0.00 1 1 S 89152 Peptacetobacter hiranonis 0.00 2 0 F 186806 Eubacteriaceae 0.00 2 0 G 1730 Eubacterium 0.00 1 1 S 1736 Eubacterium limosum 0.00 1 1 S 2764325 Eubacterium hominis 0.00 1 0 F 3046368 Aristaeellaceae 0.00 1 0 G 3046369 Aristaeella 0.00 1 1 S 3046383 Aristaeella lactis 0.00 1 0 O1 538999 Eubacteriales incertae sedis 0.00 1 0 F 543314 Eubacteriales Family XIII. Incertae Sedis 0.00 1 1 G 86331 Mogibacterium 0.00 1 0 F 2937909 Desulfitobacteriaceae 0.00 1 0 G 51196 Syntrophobotulus 0.00 1 0 S 51197 Syntrophobotulus glycolicus 0.00 1 1 S1 645991 Syntrophobotulus glycolicus DSM 8271 0.00 4 0 O 68295 Thermoanaerobacterales 0.00 4 0 F 186814 Thermoanaerobacteraceae 0.00 3 1 G 28895 Thermoanaerobacterium 0.00 2 1 S 1517 Thermoanaerobacterium thermosaccharolyticum 0.00 1 1 S1 698948 Thermoanaerobacterium thermosaccharolyticum M0795 0.00 1 1 G 1754 Thermoanaerobacter 0.00 3 0 C 1737404 Tissierellia 0.00 2 0 O 1737405 Tissierellales 0.00 2 0 F 1737406 Tissierellaceae 0.00 2 0 G 41273 Tissierella 0.00 2 0 G1 2638726 unclassified Tissierella 0.00 2 2 S 3070999 Tissierella sp. MB52-C2 0.00 1 0 C1 1737407 Tissierellia incertae sedis 0.00 1 0 G 190972 Sedimentibacter 0.00 1 0 G1 2649220 unclassified Sedimentibacter 0.00 1 1 S 2816908 Sedimentibacter sp. zth1 41.32 378813 9 P 201174 Actinomycetota 41.32 378803 476 C 1760 Actinomycetes 41.25 378123 0 O 85004 Bifidobacteriales 41.25 378123 68 F 31953 Bifidobacteriaceae 41.24 378049 127288 G 1678 Bifidobacterium 21.71 199044 197937 S 1681 Bifidobacterium bifidum 0.06 543 543 S1 702459 Bifidobacterium bifidum PRL2010 0.06 507 507 S1 883062 Bifidobacterium bifidum S17 0.00 35 35 S1 500634 Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456 0.00 22 22 S1 484020 Bifidobacterium bifidum BGN4 4.54 41607 40436 S 216816 Bifidobacterium longum 0.07 632 545 S1 1679 Bifidobacterium longum subsp. longum 0.01 50 50 S2 1300227 Bifidobacterium longum subsp. longum GT15 0.00 12 12 S2 722911 Bifidobacterium longum subsp. longum F8 0.00 11 11 S2 1035817 Bifidobacterium longum subsp. longum KACC 91563 0.00 7 7 S2 890402 Bifidobacterium longum subsp. longum BBMN68 0.00 5 5 S2 759350 Bifidobacterium longum subsp. longum JDM301 0.00 2 2 S2 565042 Bifidobacterium longum subsp. longum JCM 1217 0.05 463 415 S1 1682 Bifidobacterium longum subsp. infantis 0.01 47 47 S2 565040 Bifidobacterium longum subsp. infantis 157F 0.00 1 1 S2 391904 Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 0.00 37 37 S1 1931217 Bifidobacterium longum subsp. suillum 0.00 21 21 S1 1322347 Bifidobacterium longum E18 0.00 16 16 S1 205913 Bifidobacterium longum DJO10A 0.00 2 2 S1 206672 Bifidobacterium longum NCC2705 0.93 8538 7085 S 28025 Bifidobacterium animalis 0.12 1074 681 S1 302911 Bifidobacterium animalis subsp. lactis 0.02 153 153 S2 1167629 Bifidobacterium animalis subsp. lactis ATCC 27673 0.01 113 113 S2 1316911 Bifidobacterium animalis subsp. lactis KLDS2.0603 0.00 28 28 S2 1168290 Bifidobacterium animalis subsp. lactis B420 0.00 21 21 S2 555970 Bifidobacterium animalis subsp. lactis DSM 10140 0.00 21 21 S2 1042403 Bifidobacterium animalis subsp. lactis CNCM I-2494 0.00 18 18 S2 442563 Bifidobacterium animalis subsp. lactis AD011 0.00 14 14 S2 580050 Bifidobacterium animalis subsp. lactis Bl-04 0.00 14 14 S2 1075106 Bifidobacterium animalis subsp. lactis BLC1 0.00 7 7 S2 1281781 Bifidobacterium animalis subsp. lactis Bl12 0.00 4 4 S2 573236 Bifidobacterium animalis subsp. lactis V9 0.04 379 374 S1 302912 Bifidobacterium animalis subsp. animalis 0.00 5 5 S2 703613 Bifidobacterium animalis subsp. animalis ATCC 25527 0.03 256 207 S 1694 Bifidobacterium pseudolongum 0.00 30 6 S1 1690 Bifidobacterium pseudolongum subsp. globosum 0.00 24 24 S2 1410605 Bifidobacterium pseudolongum subsp. globosum DSM 20092 0.00 13 13 S1 1447715 Bifidobacterium pseudolongum PV8-2 0.00 6 6 S1 31954 Bifidobacterium pseudolongum subsp. pseudolongum 0.03 247 236 S 1685 Bifidobacterium breve 0.00 4 4 S1 1385940 Bifidobacterium breve JCM 7019 0.00 3 3 S1 936351 Bifidobacterium breve S27 0.00 2 2 S1 1385939 Bifidobacterium breve JCM 7017 0.00 1 1 S1 866777 Bifidobacterium breve ACS-071-V-Sch8b 0.00 1 1 S1 1385942 Bifidobacterium breve 689b 0.02 214 81 G1 2608897 unclassified Bifidobacterium 0.00 23 23 S 2983233 Bifidobacterium sp. ESL0790 0.00 20 20 S 2983230 Bifidobacterium sp. ESL0775 0.00 15 15 S 2985571 Bifidobacterium sp. KRGSERBCFTRI 0.00 14 14 S 2983212 Bifidobacterium sp. ESL0682 0.00 9 9 S 2983220 Bifidobacterium sp. ESL0728 0.00 8 8 S 2983214 Bifidobacterium sp. ESL0690 0.00 8 8 S 2983222 Bifidobacterium sp. ESL0732 0.00 8 8 S 2983229 Bifidobacterium sp. ESL0769 0.00 8 8 S 2983235 Bifidobacterium sp. ESL0798 0.00 7 7 S 2983236 Bifidobacterium sp. ESL0800 0.00 6 6 S 2983219 Bifidobacterium sp. ESL0704 0.00 5 5 S 2983228 Bifidobacterium sp. ESL0764 0.00 2 2 S 2922858 Bifidobacterium sp. TKU 0.02 138 0 S 158787 Bifidobacterium scardovii 0.02 138 138 S1 1150461 Bifidobacterium scardovii JCM 12489 = DSM 13734 0.01 136 136 S 35760 Bifidobacterium choerinum 0.01 120 120 S 1689 Bifidobacterium dentium 0.01 76 0 S 78448 Bifidobacterium pullorum 0.01 76 76 S1 78344 Bifidobacterium pullorum subsp. gallinarum 0.01 52 52 S 1680 Bifidobacterium adolescentis 0.01 49 36 S 1683 Bifidobacterium angulatum 0.00 13 13 S1 518635 Bifidobacterium angulatum DSM 20098 = JCM 7096 0.00 45 45 S 28026 Bifidobacterium pseudocatenulatum 0.00 41 20 S 1686 Bifidobacterium catenulatum 0.00 13 13 S1 1447716 Bifidobacterium catenulatum PV20-2 0.00 8 8 S1 630129 Bifidobacterium catenulatum subsp. kashiwanohense 0.00 36 36 S 33905 Bifidobacterium thermophilum 0.00 36 36 S 77635 Bifidobacterium subtile 0.00 29 29 S 1603886 Bifidobacterium lemurum 0.00 27 27 S 1765219 Bifidobacterium eulemuris 0.00 26 26 S 1684 Bifidobacterium asteroides 0.00 23 0 S 638619 Bifidobacterium actinocoloniiforme 0.00 23 23 S1 1437605 Bifidobacterium actinocoloniiforme DSM 22766 0.00 12 12 S 2020965 Bifidobacterium imperatoris 0.00 7 7 S 762210 Bifidobacterium saguini 0.00 1 1 S 1687 Bifidobacterium coryneforme 0.00 1 0 S 1691 Bifidobacterium indicum 0.00 1 1 S1 1341694 Bifidobacterium indicum LMG 11587 = DSM 20214 0.00 6 1 G 2701 Gardnerella 0.00 3 3 S 2702 Gardnerella vaginalis 0.00 2 2 S 2792977 Gardnerella piotii 0.01 133 0 O 85007 Mycobacteriales 0.01 73 0 F 85025 Nocardiaceae 0.01 73 2 G 1827 Rhodococcus 0.00 42 0 G1 192944 unclassified Rhodococcus (in: high G+C Gram-positive bacteria) 0.00 39 39 S 3047468 Rhodococcus sp. AH-ZY2 0.00 2 2 S 2499145 Rhodococcus sp. X156 0.00 1 1 S 2742603 Rhodococcus sp. W8901 0.00 28 7 S 1828 Rhodococcus fascians 0.00 17 17 S1 1051973 Rhodococcus fascians D188 0.00 4 4 S1 1443893 Rhodococcus fascians A21d2 0.00 1 0 S 37919 Rhodococcus opacus 0.00 1 1 S1 632772 Rhodococcus opacus B4 0.01 58 0 F 1653 Corynebacteriaceae 0.01 58 33 G 1716 Corynebacterium 0.00 9 9 S 43771 Corynebacterium urealyticum 0.00 5 4 S 38286 Corynebacterium afermentans 0.00 1 1 S1 144183 Corynebacterium afermentans subsp. afermentans 0.00 2 2 S 2763010 Corynebacterium lujinxingii 0.00 2 2 S 53374 Corynebacterium coyleae 0.00 1 1 S 38304 Corynebacterium tuberculostearicum 0.00 1 1 S 1717 Corynebacterium diphtheriae 0.00 1 1 S 43765 Corynebacterium amycolatum 0.00 1 1 S 28028 Corynebacterium flavescens 0.00 1 1 S 2709392 Corynebacterium qintianiae 0.00 1 0 S 163202 Corynebacterium appendicis 0.00 1 1 S1 1161099 Corynebacterium appendicis CIP 107643 0.00 1 1 S 43770 Corynebacterium striatum 0.00 2 0 F 1762 Mycobacteriaceae 0.00 1 0 G 1763 Mycobacterium 0.00 1 0 G1 120793 Mycobacterium avium complex (MAC) 0.00 1 1 S 1764 Mycobacterium avium 0.00 1 0 G 670516 Mycobacteroides 0.00 1 0 S 36809 Mycobacteroides abscessus 0.00 1 1 S1 1185650 Mycobacteroides abscessus subsp. abscessus 0.00 40 2 O 85006 Micrococcales 0.00 15 2 F 85023 Microbacteriaceae 0.00 8 3 G 33882 Microbacterium 0.00 5 3 G1 2609290 unclassified Microbacterium 0.00 1 1 S 2851648 Microbacterium sp. SSW1-36 0.00 1 1 S 2268461 Microbacterium sp. ABRD28 0.00 2 0 G 46352 Agrococcus 0.00 2 2 S 399736 Agrococcus jejuensis 0.00 1 0 G 427753 Humibacter 0.00 1 1 S 2599293 Humibacter ginsenosidimutans 0.00 1 0 G 55968 Leucobacter 0.00 1 1 S 1784719 Leucobacter triazinivorans 0.00 1 0 G 110932 Leifsonia 0.00 1 0 S 1575 Leifsonia xyli 0.00 1 0 S1 59736 Leifsonia xyli subsp. xyli 0.00 1 1 S2 281090 Leifsonia xyli subsp. xyli str. CTCB07 0.00 13 1 F 1268 Micrococcaceae 0.00 4 0 G 1663 Arthrobacter 0.00 3 0 G1 235627 unclassified Arthrobacter 0.00 2 2 S 2861279 Arthrobacter sp. PAMC25284 0.00 1 1 S 2879618 Arthrobacter sp. FW306-2-2C-D06B 0.00 1 1 S 2486855 Arthrobacter sulfonylureivorans 0.00 4 0 G 32207 Rothia 0.00 3 3 S 37923 Rothia kristinae 0.00 1 1 S 85336 Rothia nasimurium 0.00 3 2 G 1269 Micrococcus 0.00 1 1 S 1270 Micrococcus luteus 0.00 1 0 G 1742990 Paeniglutamicibacter 0.00 1 0 G1 2639426 unclassified Paeniglutamicibacter 0.00 1 1 S 2986919 Paeniglutamicibacter sp. ZC-3 0.00 4 0 F 85021 Intrasporangiaceae 0.00 4 0 G 53457 Janibacter 0.00 4 4 S 53458 Janibacter limosus 0.00 3 0 F 85019 Brevibacteriaceae 0.00 3 0 G 1696 Brevibacterium 0.00 2 2 S 33889 Brevibacterium casei 0.00 1 0 G1 2614124 unclassified Brevibacterium 0.00 1 1 S 2725563 Brevibacterium sp. 'Marine' 0.00 2 0 F 85020 Dermabacteraceae 0.00 1 0 G 36739 Dermabacter 0.00 1 1 S 1630135 Dermabacter vaginalis 0.00 1 0 G 43668 Brachybacterium 0.00 1 0 G1 2623841 unclassified Brachybacterium 0.00 1 1 S 3069708 Brachybacterium sp. GU-2 0.00 1 0 F 145358 Bogoriellaceae 0.00 1 0 G 154116 Georgenia 0.00 1 1 S 2483799 Georgenia faecalis 0.00 13 0 O 85009 Propionibacteriales 0.00 11 0 F 31957 Propionibacteriaceae 0.00 8 0 G 1912216 Cutibacterium 0.00 8 8 S 1747 Cutibacterium acnes 0.00 1 0 G 29404 Microlunatus 0.00 1 0 G1 2619695 unclassified Microlunatus 0.00 1 1 S 2672569 Microlunatus sp. Gsoil 973 0.00 1 0 G 72763 Tessaracoccus 0.00 1 1 S 1610493 Tessaracoccus flavus 0.00 1 0 G 1278221 Auraticoccus 0.00 1 1 S 675864 Auraticoccus monumenti 0.00 2 0 F 85015 Nocardioidaceae 0.00 1 1 G 1839 Nocardioides 0.00 1 0 G 3024237 Solicola 0.00 1 1 S 2908642 Solicola gregarius 0.00 6 0 O 85011 Kitasatosporales 0.00 6 0 F 2062 Streptomycetaceae 0.00 6 1 G 1883 Streptomyces 0.00 2 0 G1 2593676 unclassified Streptomyces 0.00 1 1 S 2981135 Streptomyces sp. HUAS 14-6 0.00 1 1 S 3075199 Streptomyces sp. ITFR-21 0.00 1 1 S 2768066 Streptomyces roseirectus 0.00 1 1 S 67287 Streptomyces cinnabarinus 0.00 1 1 S 1442032 Streptomyces dangxiongensis 0.00 5 0 O 85010 Pseudonocardiales 0.00 5 0 F 2070 Pseudonocardiaceae 0.00 2 0 G 1813 Amycolatopsis 0.00 1 1 S 700274 Amycolatopsis roodepoortensis 0.00 1 0 G1 2618356 unclassified Amycolatopsis 0.00 1 1 S 2778070 Amycolatopsis sp. FDAARGOS 1241 0.00 1 0 G 1835 Saccharopolyspora 0.00 1 1 S 524884 Saccharopolyspora rosea 0.00 1 0 G 40566 Actinosynnema 0.00 1 0 S 40567 Actinosynnema mirum 0.00 1 1 S1 446462 Actinosynnema mirum DSM 43827 0.00 1 0 G 43356 Kutzneria 0.00 1 0 S 43357 Kutzneria albida 0.00 1 1 S1 1449976 Kutzneria albida DSM 43870 0.00 4 0 O 2037 Actinomycetales 0.00 4 0 F 2049 Actinomycetaceae 0.00 2 0 G 2529408 Schaalia 0.00 1 1 S 52773 Schaalia meyeri 0.00 1 1 S 131111 Schaalia turicensis 0.00 1 0 G 1654 Actinomyces 0.00 1 1 S 1659 Actinomyces israelii 0.00 1 0 G 2692118 Winkia 0.00 1 0 S 33007 Winkia neuii 0.00 1 1 S1 29318 Winkia neuii subsp. anitrata 0.00 2 0 O 85008 Micromonosporales 0.00 2 0 F 28056 Micromonosporaceae 0.00 1 0 G 1873 Micromonospora 0.00 1 1 S 1881 Micromonospora viridifaciens 0.00 1 0 G 673534 Plantactinospora 0.00 1 1 G1 2631981 unclassified Plantactinospora 0.00 1 0 O 85012 Streptosporangiales 0.00 1 0 F 83676 Nocardiopsaceae 0.00 1 0 G 104204 Streptomonospora 0.00 1 1 S 2498135 Streptomonospora litoralis 0.00 1 0 C 84995 Rubrobacteria 0.00 1 0 O 84996 Rubrobacterales 0.00 1 0 F 2600303 Baekduiaceae 0.00 1 0 G 2600304 Baekduia 0.00 1 1 S 2997333 Baekduia alba 0.00 7 0 D2 1798711 Cyanobacteriota/Melainabacteria group 0.00 7 0 P 1117 Cyanobacteriota 0.00 7 2 C 3028117 Cyanophyceae 0.00 2 0 O 1890424 Synechococcales 0.00 2 0 F 2881426 Prochlorococcaceae 0.00 2 0 G 1218 Prochlorococcus 0.00 2 0 S 1219 Prochlorococcus marinus 0.00 2 2 S1 167542 Prochlorococcus marinus str. MIT 9515 0.00 1 0 O 1161 Nostocales 0.00 1 0 F 2661849 Calotrichaceae 0.00 1 0 G 1186 Calothrix 0.00 1 0 G1 2619626 unclassified Calothrix 0.00 1 1 S 1954172 Calothrix sp. NIES-2100 0.00 1 0 C1 1301283 Oscillatoriophycideae 0.00 1 0 O 1118 Chroococcales 0.00 1 0 F 1890450 Aphanothecaceae 0.00 1 0 F1 92682 Halothece cluster 0.00 1 0 G 65097 Euhalothece 0.00 1 0 S 577489 Euhalothece natronophila 0.00 1 1 S1 522448 Euhalothece natronophila Z-M001 0.00 1 0 O 2881377 Pseudanabaenales 0.00 1 0 F 2881378 Thermosynechococcaceae 0.00 1 0 G 146785 Thermosynechococcus 0.00 1 1 G1 2622553 unclassified Thermosynechococcus 0.00 2 0 P 1297 Deinococcota 0.00 2 0 C 188787 Deinococci 0.00 1 0 O 68933 Thermales 0.00 1 0 F 188786 Thermaceae 0.00 1 1 G 270 Thermus 0.00 1 0 O 118964 Deinococcales 0.00 1 0 F 183710 Deinococcaceae 0.00 1 0 G 1298 Deinococcus 0.00 1 1 S 1211322 Deinococcus metallilatus 0.00 2 0 P 544448 Mycoplasmatota 0.00 2 0 C 31969 Mollicutes 0.00 2 0 O 2085 Mycoplasmatales 0.00 2 0 F 2092 Mycoplasmataceae 0.00 1 0 G 2093 Mycoplasma 0.00 1 0 G1 2683645 unclassified Mycoplasma 0.00 1 1 S 2810348 Mycoplasma sp. SG1 0.00 1 0 G 2767358 Mycoplasmopsis 0.00 1 1 S 28903 Mycoplasmopsis bovis 1.03 9474 16 P 1224 Pseudomonadota 1.00 9193 8 C 1236 Gammaproteobacteria 0.99 9121 2 O 91347 Enterobacterales 0.99 9116 83 F 543 Enterobacteriaceae 0.53 4824 0 G 547 Enterobacter 0.53 4824 0 G1 354276 Enterobacter cloacae complex 0.53 4824 4824 S 158836 Enterobacter hormaechei 0.46 4208 0 G 561 Escherichia 0.46 4208 0 S 562 Escherichia coli 0.46 4208 0 S1 83334 Escherichia coli O157:H7 0.46 4208 4208 S2 155864 Escherichia coli O157:H7 str. EDL933 0.00 1 0 G 544 Citrobacter 0.00 1 1 S 67825 Citrobacter rodentium 0.00 2 0 F 1903409 Erwiniaceae 0.00 1 0 G 551 Erwinia 0.00 1 1 S 1922217 Candidatus Erwinia haradaeae 0.00 1 0 G 32199 Buchnera 0.00 1 0 S 9 Buchnera aphidicola 0.00 1 1 S1 118118 Buchnera aphidicola (Uroleucon sonchi) 0.00 1 0 F 1903411 Yersiniaceae 0.00 1 0 G 613 Serratia 0.00 1 1 S 458197 Serratia nematodiphila 0.00 39 0 O 135614 Xanthomonadales 0.00 38 1 F 32033 Xanthomonadaceae 0.00 34 3 G 338 Xanthomonas 0.00 30 30 S 339 Xanthomonas campestris 0.00 1 1 S 29447 Xanthomonas albilineans 0.00 2 1 G 40323 Stenotrophomonas 0.00 1 1 S 2045451 Stenotrophomonas indicatrix 0.00 1 0 G 68 Lysobacter 0.00 1 0 G1 2635362 unclassified Lysobacter 0.00 1 1 S 2762611 Lysobacter sp. CW239 0.00 1 0 F 1775411 Rhodanobacteraceae 0.00 1 0 G 242605 Luteibacter 0.00 1 1 S 2589080 Luteibacter pinisoli 0.00 7 0 O 72274 Pseudomonadales 0.00 6 0 F 135621 Pseudomonadaceae 0.00 5 2 G 286 Pseudomonas 0.00 2 0 G1 196821 unclassified Pseudomonas 0.00 1 1 S 1573718 Pseudomonas sp. S34 0.00 1 1 S 1611770 Pseudomonas sp. MRSN 12121 0.00 1 0 G1 136841 Pseudomonas aeruginosa group 0.00 1 1 S 287 Pseudomonas aeruginosa 0.00 1 0 G 2901189 Halopseudomonas 0.00 1 0 G1 2901190 unclassified Halopseudomonas 0.00 1 1 S 2918528 Halopseudomonas sp. RR6 0.00 1 0 F 2887365 Marinobacteraceae 0.00 1 1 G 2742 Marinobacter 0.00 5 0 O 135623 Vibrionales 0.00 5 0 F 641 Vibrionaceae 0.00 5 0 G 662 Vibrio 0.00 2 2 S 190893 Vibrio coralliilyticus 0.00 2 2 S 28173 Vibrio nigripulchritudo 0.00 1 1 S 29494 Vibrio furnissii 0.00 4 0 O 135622 Alteromonadales 0.00 2 0 F 72275 Alteromonadaceae 0.00 1 0 G 2661818 Saliniradius 0.00 1 1 S 2183582 Saliniradius amylolyticus 0.00 1 0 F1 2903219 Alteromonas/Salinimonas group 0.00 1 0 G 288793 Salinimonas 0.00 1 1 S 2303538 Salinimonas sediminis 0.00 2 0 F 267890 Shewanellaceae 0.00 2 2 G 22 Shewanella 0.00 3 0 O 135625 Pasteurellales 0.00 3 0 F 712 Pasteurellaceae 0.00 2 0 G 745 Pasteurella 0.00 2 0 S 747 Pasteurella multocida 0.00 2 2 S1 44283 Pasteurella multocida subsp. multocida 0.00 1 0 G 416916 Aggregatibacter 0.00 1 1 S 714 Aggregatibacter actinomycetemcomitans 0.00 2 0 O 2887326 Moraxellales 0.00 2 0 F 468 Moraxellaceae 0.00 2 2 G 469 Acinetobacter 0.00 2 0 O 135624 Aeromonadales 0.00 2 0 F 84642 Aeromonadaceae 0.00 1 1 G 642 Aeromonas 0.00 1 0 G 129577 Oceanimonas 0.00 1 0 G1 2636315 unclassified Oceanimonas 0.00 1 1 S 511062 Oceanimonas sp. GK1 0.00 1 0 O 72273 Thiotrichales 0.00 1 0 F 34064 Francisellaceae 0.00 1 0 G 1869285 Allofrancisella 0.00 1 1 S 594679 Allofrancisella guangzhouensis 0.00 1 0 O 135619 Oceanospirillales 0.00 1 0 F 28256 Halomonadaceae 0.00 1 1 G 404432 Salinicola 0.02 152 3 C 28216 Betaproteobacteria 0.02 143 6 O 80840 Burkholderiales 0.01 101 1 F 119060 Burkholderiaceae 0.01 83 17 G 106589 Cupriavidus 0.00 30 30 S 119219 Cupriavidus metallidurans 0.00 16 16 S 82633 Cupriavidus pauculus 0.00 6 1 G1 2640874 unclassified Cupriavidus 0.00 4 4 S 2839983 Cupriavidus sp. EM10 0.00 1 1 S 3032282 Cupriavidus sp. WKF15 0.00 4 4 S 68895 Cupriavidus basilensis 0.00 3 1 S 106590 Cupriavidus necator 0.00 1 1 S1 53482 Cupriavidus necator H850 0.00 1 1 S1 1042878 Cupriavidus necator N-1 0.00 2 2 S 96344 Cupriavidus oxalaticus 0.00 2 2 S 151783 Cupriavidus campinensis 0.00 2 2 S 164546 Cupriavidus taiwanensis 0.00 1 1 S 2608999 Cupriavidus cauae 0.00 10 0 G 48736 Ralstonia 0.00 10 10 S 190721 Ralstonia insidiosa 0.00 4 1 G 32008 Burkholderia 0.00 2 0 G1 87882 Burkholderia cepacia complex 0.00 2 2 S 488447 Burkholderia contaminans 0.00 1 0 G1 2613784 unclassified Burkholderia 0.00 1 1 S 2571746 Burkholderia sp. DHOD12 0.00 2 2 G 1822464 Paraburkholderia 0.00 1 1 G 93217 Pandoraea 0.00 16 2 F 80864 Comamonadaceae 0.00 2 0 G 12916 Acidovorax 0.00 1 1 S 553814 Acidovorax carolinensis 0.00 1 1 G1 2684926 unclassified Acidovorax 0.00 2 0 G 34072 Variovorax 0.00 2 1 S 34073 Variovorax paradoxus 0.00 1 1 S1 1246301 Variovorax paradoxus B4 0.00 2 1 G 80865 Delftia 0.00 1 0 G1 2613839 unclassified Delftia 0.00 1 1 S 742013 Delftia sp. Cs1-4 0.00 2 0 G 352450 Simplicispira 0.00 2 2 S 2109915 Simplicispira suum 0.00 1 1 G 283 Comamonas 0.00 1 0 G 47420 Hydrogenophaga 0.00 1 0 G1 2610897 unclassified Hydrogenophaga 0.00 1 1 S 795665 Hydrogenophaga sp. PBC 0.00 1 0 G 52972 Polaromonas 0.00 1 0 S 216465 Polaromonas naphthalenivorans 0.00 1 1 S1 365044 Polaromonas naphthalenivorans CJ2 0.00 1 0 G 201096 Alicycliphilus 0.00 1 1 S 179636 Alicycliphilus denitrificans 0.00 1 0 G 219181 Ottowia 0.00 1 1 S 2816950 Ottowia testudinis 0.00 1 0 G 665874 Limnohabitans 0.00 1 0 G1 2626134 unclassified Limnohabitans 0.00 1 1 S 2986280 Limnohabitans sp. INBF002 0.00 6 2 F 506 Alcaligenaceae 0.00 3 0 G 222 Achromobacter 0.00 2 0 G1 2626865 unclassified Achromobacter 0.00 1 1 S 2860286 Achromobacter sp. ES-001 0.00 1 1 S 3047478 Achromobacter sp. R39 0.00 1 1 S 72557 Achromobacter ruhlandii 0.00 1 0 G 152267 Pigmentiphaga 0.00 1 1 S 1940612 Pigmentiphaga aceris 0.00 5 1 O1 224471 Burkholderiales genera incertae sedis 0.00 4 0 G 92793 Aquabacterium 0.00 4 4 S 1296669 Aquabacterium olei 0.00 5 0 F 2975441 Sphaerotilaceae 0.00 1 0 G 36862 Ideonella 0.00 1 1 S 36863 Ideonella dechloratans 0.00 1 0 G 93681 Roseateles 0.00 1 0 G1 2626991 unclassified Roseateles 0.00 1 1 S 2995138 Roseateles sp. SL47 0.00 1 0 G 196013 Caldimonas 0.00 1 1 S 215580 Caldimonas thermodepolymerans 0.00 1 0 G 316612 Methylibium 0.00 1 0 G1 2633235 unclassified Methylibium 0.00 1 1 S 2082386 Methylibium sp. Pch-M 0.00 1 0 G 391952 Aquincola 0.00 1 1 S 391953 Aquincola tertiaricarbonis 0.00 4 0 F 75682 Oxalobacteraceae 0.00 2 0 G 29580 Janthinobacterium 0.00 2 2 G1 2610881 unclassified Janthinobacterium 0.00 1 0 G 202907 Collimonas 0.00 1 1 S 279058 Collimonas arenae 0.00 1 0 F1 2895353 Telluria group 0.00 1 0 G 1522432 Pseudoduganella 0.00 1 1 S 871742 Pseudoduganella flava 0.00 2 0 O 32003 Nitrosomonadales 0.00 1 0 F 32011 Methylophilaceae 0.00 1 0 G 404 Methylobacillus 0.00 1 0 S 405 Methylobacillus flagellatus 0.00 1 1 S1 265072 Methylobacillus flagellatus KT 0.00 1 0 F 206379 Nitrosomonadaceae 0.00 1 0 G 914 Nitrosomonas 0.00 1 1 S 1444684 Nitrosomonas stercoris 0.00 2 0 O 206351 Neisseriales 0.00 2 0 F 481 Neisseriaceae 0.00 1 1 G 482 Neisseria 0.00 1 0 G 2593687 Aquella 0.00 1 1 S 2067065 Aquella oligotrophica 0.00 1 1 O 206389 Rhodocyclales 0.00 1 0 O 1442155 Ferrovales 0.00 1 0 F 1442156 Ferrovaceae 0.00 1 0 G 416212 Ferrovum 0.00 1 1 S 416213 Ferrovum myxofaciens 0.01 113 1 C 28211 Alphaproteobacteria 0.01 91 4 O 356 Hyphomicrobiales 0.01 61 2 F 41294 Nitrobacteraceae 0.01 54 15 G 374 Bradyrhizobium 0.00 28 5 G1 2631580 unclassified Bradyrhizobium 0.00 2 2 S 2898149 Bradyrhizobium sp. A19 0.00 2 2 S 2782659 Bradyrhizobium sp. 191 0.00 2 2 S 2057741 Bradyrhizobium sp. SK17 0.00 1 1 S 55395 Bradyrhizobium sp. NC92 0.00 1 1 S 3056648 Bradyrhizobium sp. S12-14-2 0.00 1 1 S 3039155 Bradyrhizobium sp. CB2312 0.00 1 1 S 2976823 Bradyrhizobium sp. CB1024 0.00 1 1 S 2954771 Bradyrhizobium sp. Ash2021 0.00 1 1 S 2949630 Bradyrhizobium sp. CCGUVB23 0.00 1 1 S 2782660 Bradyrhizobium sp. 192 0.00 1 1 S 2782654 Bradyrhizobium sp. 186 0.00 1 1 S 2590772 Bradyrhizobium sp. I71 0.00 1 1 S 1404888 Bradyrhizobium sp. 1(2017) 0.00 1 1 S 1325120 Bradyrhizobium sp. CCBAU 53421 0.00 1 1 S 1325114 Bradyrhizobium sp. CCBAU 53351 0.00 1 1 S 439387 Bradyrhizobium sp. CIAT3101 0.00 1 1 S 1325102 Bradyrhizobium sp. CCBAU 51765 0.00 1 1 S 1325100 Bradyrhizobium sp. CCBAU 51753 0.00 1 1 S 858422 Bradyrhizobium sp. CCBAU 051011 0.00 1 1 S 1197460 Bradyrhizobium sp. 6(2017) 0.00 2 2 S 1355477 Bradyrhizobium diazoefficiens 0.00 2 2 S 1437360 Bradyrhizobium erythrophlei 0.00 2 2 S 1549949 Bradyrhizobium vignae 0.00 1 1 S 722472 Bradyrhizobium lablabi 0.00 1 1 S 1404367 Bradyrhizobium symbiodeficiens 0.00 1 1 S 1325090 Bradyrhizobium guangdongense 0.00 1 1 S 993502 Bradyrhizobium daqingense 0.00 1 1 S 255045 Bradyrhizobium canariense 0.00 3 0 G 1073 Rhodopseudomonas 0.00 2 2 S 1076 Rhodopseudomonas palustris 0.00 1 0 G1 2638247 unclassified Rhodopseudomonas 0.00 1 1 S 2991972 Rhodopseudomonas sp. P2A-2r 0.00 2 0 G 1033 Afipia 0.00 2 0 G1 2642050 unclassified Afipia 0.00 2 2 S 1320552 Afipia sp. NBIMC_P1-C1 0.00 20 0 F 69277 Phyllobacteriaceae 0.00 20 0 G 68287 Mesorhizobium 0.00 20 20 S 2725666 Mesorhizobium terrae 0.00 3 0 F 82115 Rhizobiaceae 0.00 2 0 F1 227290 Rhizobium/Agrobacterium group 0.00 2 0 G 379 Rhizobium 0.00 2 0 G1 2613769 unclassified Rhizobium 0.00 2 2 S 2775403 Rhizobium sp. TH2 0.00 1 0 G 323620 Shinella 0.00 1 0 G1 2643062 unclassified Shinella 0.00 1 1 S 2877941 Shinella sp. XGS7 0.00 2 0 O1 119042 Hyphomicrobiales incertae sedis 0.00 2 0 G 1734920 Pseudorhodoplanes 0.00 2 2 S 1235591 Pseudorhodoplanes sinuspersici 0.00 1 0 F 335928 Xanthobacteraceae 0.00 1 0 G 279 Xanthobacter 0.00 1 1 S 2528964 Xanthobacter dioxanivorans 0.00 12 4 O 204457 Sphingomonadales 0.00 8 1 F 41297 Sphingomonadaceae 0.00 5 1 G 13687 Sphingomonas 0.00 2 0 G1 196159 unclassified Sphingomonas 0.00 2 2 S 3014784 Sphingomonas sp. NIBR02145 0.00 1 1 S 1609977 Sphingomonas hengshuiensis 0.00 1 1 S 1813879 Sphingomonas panacisoli 0.00 1 0 G 165695 Sphingobium 0.00 1 0 G1 2611147 unclassified Sphingobium 0.00 1 1 S 3038927 Sphingobium sp. V4 0.00 1 0 G 2676233 Sphingosinithalassobacter 0.00 1 1 S 2711215 Sphingosinithalassobacter tenebrarum 0.00 4 0 O 204455 Rhodobacterales 0.00 2 0 F 31989 Paracoccaceae 0.00 1 0 G 265 Paracoccus 0.00 1 1 S 1077935 Paracoccus zhejiangensis 0.00 1 0 G 3029205 Abyssibius 0.00 1 1 S 2881234 Abyssibius alkaniclasticus 0.00 2 0 F 2854170 Roseobacteraceae 0.00 1 0 G 74030 Roseovarius 0.00 1 0 G1 2614913 unclassified Roseovarius 0.00 1 1 S 2587847 Roseovarius sp. THAF9 0.00 1 0 G 97050 Ruegeria 0.00 1 0 G1 2625375 unclassified Ruegeria 0.00 1 1 S 292414 Ruegeria sp. TM1040 0.00 3 0 O 204458 Caulobacterales 0.00 3 0 F 76892 Caulobacteraceae 0.00 2 0 G 41275 Brevundimonas 0.00 1 0 G1 2622653 unclassified Brevundimonas 0.00 1 1 S 2591463 Brevundimonas sp. M20 0.00 1 1 S 2800818 Brevundimonas vitisensis 0.00 1 0 G 75 Caulobacter 0.00 1 1 S 88688 Caulobacter segnis 0.00 1 0 O 766 Rickettsiales 0.00 1 0 F 942 Anaplasmataceae 0.00 1 0 F1 952 Wolbachieae 0.00 1 0 G 953 Wolbachia 0.00 1 0 G1 2640676 unclassified Wolbachia 0.00 1 1 S 2732593 Wolbachia endosymbiont of Ctenocephalides felis wCfeT 0.00 1 0 O 204441 Rhodospirillales 0.00 1 0 F 433 Acetobacteraceae 0.00 1 0 G 1434011 Komagataeibacter 0.00 1 1 S 265960 Komagataeibacter nataicola 0.00 15 0 D1 1783270 FCB group 0.00 15 0 D2 68336 Bacteroidota/Chlorobiota group 0.00 15 0 P 976 Bacteroidota 0.00 10 0 C 117743 Flavobacteriia 0.00 10 0 O 200644 Flavobacteriales 0.00 5 0 F 49546 Flavobacteriaceae 0.00 1 0 G 237 Flavobacterium 0.00 1 0 G1 196869 unclassified Flavobacterium 0.00 1 1 S 2845819 Flavobacterium sp. CECT 9288 0.00 1 0 G 52959 Polaribacter 0.00 1 1 S 1888915 Polaribacter haliotis 0.00 1 0 G 76831 Myroides 0.00 1 1 S 2562892 Myroides albus 0.00 1 0 G 444051 Mesoflavibacter 0.00 1 0 G1 2630131 unclassified Mesoflavibacter 0.00 1 1 S 2779362 Mesoflavibacter sp. SCSIO 43206 0.00 1 0 G 104267 Tenacibaculum 0.00 1 1 S 107401 Tenacibaculum maritimum 0.00 3 0 F 2762318 Weeksellaceae 0.00 3 0 F1 2782232 Chryseobacterium group 0.00 2 0 G 59732 Chryseobacterium 0.00 1 1 S 536441 Chryseobacterium taklimakanense 0.00 1 0 G1 2593645 unclassified Chryseobacterium 0.00 1 1 S 1871047 Chryseobacterium sp. 0.00 1 0 G 2782231 Kaistella 0.00 1 1 S 2038776 Kaistella flava (ex Peng et al. 2021) 0.00 2 0 F 39782 Blattabacteriaceae 0.00 2 0 G 34098 Blattabacterium 0.00 2 2 S 1653831 Blattabacterium cuenoti 0.00 3 0 C 768503 Cytophagia 0.00 3 0 O 768507 Cytophagales 0.00 2 0 F 1853232 Hymenobacteraceae 0.00 1 0 G 89966 Hymenobacter 0.00 1 1 S 2761579 Hymenobacter sediminicola 0.00 1 0 G 1379908 Rufibacter 0.00 1 1 S 512763 Rufibacter tibetensis 0.00 1 0 F 89373 Cytophagaceae 0.00 1 0 G 2674996 Tellurirhabdus 0.00 1 1 S 2674997 Tellurirhabdus rosea 0.00 1 0 C 200643 Bacteroidia 0.00 1 0 O 171549 Bacteroidales 0.00 1 0 F 1853231 Odoribacteraceae 0.00 1 0 G 283168 Odoribacter 0.00 1 1 S 28118 Odoribacter splanchnicus 0.00 1 0 C 1853228 Chitinophagia 0.00 1 0 O 1853229 Chitinophagales 0.00 1 0 F 563835 Chitinophagaceae 0.00 1 0 G 2812019 Pseudocnuella 0.00 1 1 S 2502779 Pseudocnuella soli 0.00 3 0 P 2818505 Myxococcota 0.00 2 0 P1 3031711 Polyangia 0.00 2 0 O 3031712 Polyangiales 0.00 2 0 F 1055686 Sandaracinaceae 0.00 2 0 G 1055688 Sandaracinus 0.00 2 2 S 927083 Sandaracinus amylolyticus 0.00 1 0 C 32015 Myxococcia 0.00 1 0 O 29 Myxococcales 0.00 1 0 O1 80811 Cystobacterineae 0.00 1 0 F 31 Myxococcaceae 0.00 1 0 G 83461 Corallococcus 0.00 1 1 S 184914 Corallococcus coralloides 0.00 2 0 D1 1783257 PVC group 0.00 1 0 P 74201 Verrucomicrobiota 0.00 1 0 C 203494 Verrucomicrobiae 0.00 1 0 O 48461 Verrucomicrobiales 0.00 1 0 F 1647988 Akkermansiaceae 0.00 1 0 G 239934 Akkermansia 0.00 1 1 S 239935 Akkermansia muciniphila 0.00 1 0 P 204428 Chlamydiota 0.00 1 0 C 204429 Chlamydiia 0.00 1 0 O 51291 Chlamydiales 0.00 1 1 F 809 Chlamydiaceae 0.00 1 0 P 32066 Fusobacteriota 0.00 1 0 C 203490 Fusobacteriia 0.00 1 0 O 203491 Fusobacteriales 0.00 1 0 F 1129771 Leptotrichiaceae 0.00 1 0 G 32067 Leptotrichia 0.00 1 1 S 157687 Leptotrichia wadei 0.01 100 0 D 2759 Eukaryota 0.01 100 0 D1 33154 Opisthokonta 0.01 100 0 K 33208 Metazoa 0.01 100 0 K1 6072 Eumetazoa 0.01 100 0 K2 33213 Bilateria 0.01 100 0 K3 33511 Deuterostomia 0.01 100 0 P 7711 Chordata 0.01 100 0 P1 89593 Craniata 0.01 100 0 P2 7742 Vertebrata 0.01 100 0 P3 7776 Gnathostomata 0.01 100 0 P4 117570 Teleostomi 0.01 100 0 P5 117571 Euteleostomi 0.01 100 0 P6 8287 Sarcopterygii 0.01 100 0 P7 1338369 Dipnotetrapodomorpha 0.01 100 0 P8 32523 Tetrapoda 0.01 100 0 P9 32524 Amniota 0.01 100 0 C 40674 Mammalia 0.01 100 0 C1 32525 Theria 0.01 100 0 C2 9347 Eutheria 0.01 100 0 C3 1437010 Boreoeutheria 0.01 100 0 C4 314146 Euarchontoglires 0.01 100 0 O 9443 Primates 0.01 100 0 O1 376913 Haplorrhini 0.01 100 0 O2 314293 Simiiformes 0.01 100 0 O3 9526 Catarrhini 0.01 100 0 O4 314295 Hominoidea 0.01 100 0 F 9604 Hominidae 0.01 100 0 F1 207598 Homininae 0.01 100 0 G 9605 Homo 0.01 100 100 S 9606 Homo sapiens 0.00 4 0 D 2157 Archaea 0.00 4 0 P 28890 Euryarchaeota 0.00 2 0 P1 2283794 Methanomada group 0.00 2 0 C 183925 Methanobacteria 0.00 2 0 O 2158 Methanobacteriales 0.00 2 0 F 2159 Methanobacteriaceae 0.00 1 0 G 2160 Methanobacterium 0.00 1 1 S 2162 Methanobacterium formicicum 0.00 1 0 G 2172 Methanobrevibacter 0.00 1 1 S 39441 Methanobrevibacter arboriphilus 0.00 2 0 P1 2290931 Stenosarchaea group 0.00 2 0 C 183963 Halobacteria 0.00 1 0 O 1644055 Haloferacales 0.00 1 0 F 1644056 Haloferacaceae 0.00 1 0 G 43927 Halobaculum 0.00 1 1 S 2872158 Halobaculum rubrum 0.00 1 0 O 1644060 Natrialbales 0.00 1 0 F 1644061 Natrialbaceae 0.00 1 0 G 88723 Natrinema 0.00 1 1 S 2961598 Natrinema marinum 0.00 10 0 D 10239 Viruses 0.00 9 0 D1 2731341 Duplodnaviria 0.00 9 0 K 2731360 Heunggongvirae 0.00 9 0 P 2731618 Uroviricota 0.00 9 0 C 2731619 Caudoviricetes 0.00 7 0 C1 2788787 unclassified Caudoviricetes 0.00 7 7 S 1572712 Geobacillus virus E3 0.00 2 0 G 2843462 Sukhumvitvirus 0.00 2 0 S 2845143 Sukhumvitvirus T25 0.00 2 2 S1 2036055 Lactobacillus phage T25 0.00 1 0 D1 2732004 Varidnaviria 0.00 1 0 K 2732005 Bamfordvirae 0.00 1 0 P 2732007 Nucleocytoviricota 0.00 1 0 C 2732525 Pokkesviricetes 0.00 1 0 O 2732527 Chitovirales 0.00 1 0 F 10240 Poxviridae 0.00 1 0 F1 10241 Chordopoxvirinae 0.00 1 0 G 10282 Yatapoxvirus 0.00 1 1 S 38804 Yaba monkey tumor virus