Read summary

Samples summary

Lineages

Sunburst

This visualization can be useful to interactively explore the taxonomic composition of the sample. It shows hierarchical data: each layer represents a taxonomic rank. The color indicates the abundance of that taxon in comparison with the total number of reads. Zooming into an specific taxon is possible by clicking on it.

Taxonomy

Barplot of the 9 most abundant taxa at the phylum rank. Any remaining taxa have been collapsed under the 'Other' category to facilitate the visualization. The y-axis indicates the relative abundance of each taxon in percentages for each sample.

Barplot of the 9 most abundant taxa at the class rank. Any remaining taxa have been collapsed under the 'Other' category to facilitate the visualization. The y-axis indicates the relative abundance of each taxon in percentages for each sample.

Barplot of the 9 most abundant taxa at the order rank. Any remaining taxa have been collapsed under the 'Other' category to facilitate the visualization. The y-axis indicates the relative abundance of each taxon in percentages for each sample.

Barplot of the 9 most abundant taxa at the family rank. Any remaining taxa have been collapsed under the 'Other' category to facilitate the visualization. The y-axis indicates the relative abundance of each taxon in percentages for each sample.

Barplot of the 9 most abundant taxa at the genus rank. Any remaining taxa have been collapsed under the 'Other' category to facilitate the visualization. The y-axis indicates the relative abundance of each taxon in percentages for each sample.

Barplot of the 9 most abundant taxa at the species rank. Any remaining taxa have been collapsed under the 'Other' category to facilitate the visualization. The y-axis indicates the relative abundance of each taxon in percentages for each sample.

Abundances

Abundance table for the phylum rank.

Only taxa whose global abundance are above the abundance_threshold parameter will appear in the table.

phylum barcode13 total superkingdom kingdom tax
Actinobacteria 4 4 Bacteria Bacteria_none Bacteria;Bacteria_none;Actinobacteria
Firmicutes 8320 8320 Bacteria Bacteria_none Bacteria;Bacteria_none;Firmicutes
Proteobacteria 1085 1085 Bacteria Bacteria_none Bacteria;Bacteria_none;Proteobacteria
Unknown 3253 3253 Unclassified Unknown Unclassified;Unknown;Unknown

Abundance table for the class rank.

Only taxa whose global abundance are above the abundance_threshold parameter will appear in the table.

class barcode13 total superkingdom kingdom phylum tax
Actinomycetia 3 3 Bacteria Bacteria_none Actinobacteria Bacteria;Bacteria_none;Actinobacteria;Actinomycetia
Bacilli 8310 8310 Bacteria Bacteria_none Firmicutes Bacteria;Bacteria_none;Firmicutes;Bacilli
Clostridia 7 7 Bacteria Bacteria_none Firmicutes Bacteria;Bacteria_none;Firmicutes;Clostridia
Erysipelotrichia 3 3 Bacteria Bacteria_none Firmicutes Bacteria;Bacteria_none;Firmicutes;Erysipelotrichia
Alphaproteobacteria 13 13 Bacteria Bacteria_none Proteobacteria Bacteria;Bacteria_none;Proteobacteria;Alphaproteobacteria
Betaproteobacteria 50 50 Bacteria Bacteria_none Proteobacteria Bacteria;Bacteria_none;Proteobacteria;Betaproteobacteria
Gammaproteobacteria 1021 1021 Bacteria Bacteria_none Proteobacteria Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria
Unknown 3253 3253 Unclassified Unknown Unknown Unclassified;Unknown;Unknown;Unknown

Abundance table for the order rank.

Only taxa whose global abundance are above the abundance_threshold parameter will appear in the table.

order barcode13 total superkingdom kingdom phylum class tax
Pseudonocardiales 2 2 Bacteria Bacteria_none Actinobacteria Actinomycetia Bacteria;Bacteria_none;Actinobacteria;Actinomycetia;Pseudonocardiales
Bacillales 260 260 Bacteria Bacteria_none Firmicutes Bacilli Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales
Lactobacillales 8050 8050 Bacteria Bacteria_none Firmicutes Bacilli Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales
Eubacteriales 6 6 Bacteria Bacteria_none Firmicutes Clostridia Bacteria;Bacteria_none;Firmicutes;Clostridia;Eubacteriales
Erysipelotrichales 3 3 Bacteria Bacteria_none Firmicutes Erysipelotrichia Bacteria;Bacteria_none;Firmicutes;Erysipelotrichia;Erysipelotrichales
Hyphomicrobiales 5 5 Bacteria Bacteria_none Proteobacteria Alphaproteobacteria Bacteria;Bacteria_none;Proteobacteria;Alphaproteobacteria;Hyphomicrobiales
Rhodospirillales 4 4 Bacteria Bacteria_none Proteobacteria Alphaproteobacteria Bacteria;Bacteria_none;Proteobacteria;Alphaproteobacteria;Rhodospirillales
Sphingomonadales 3 3 Bacteria Bacteria_none Proteobacteria Alphaproteobacteria Bacteria;Bacteria_none;Proteobacteria;Alphaproteobacteria;Sphingomonadales
Burkholderiales 50 50 Bacteria Bacteria_none Proteobacteria Betaproteobacteria Bacteria;Bacteria_none;Proteobacteria;Betaproteobacteria;Burkholderiales
Aeromonadales 2 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Aeromonadales
Alteromonadales 361 361 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Alteromonadales
Cellvibrionales 7 7 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Cellvibrionales
Enterobacterales 607 607 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales
Oceanospirillales 18 18 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Oceanospirillales
Orbales 2 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Orbales
Pseudomonadales 6 6 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Pseudomonadales
Vibrionales 15 15 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Vibrionales
Unknown 3253 3253 Unclassified Unknown Unknown Unknown Unclassified;Unknown;Unknown;Unknown;Unknown

Abundance table for the family rank.

Only taxa whose global abundance are above the abundance_threshold parameter will appear in the table.

family barcode13 total superkingdom kingdom phylum class order tax
Pseudonocardiaceae 2 2 Bacteria Bacteria_none Actinobacteria Actinomycetia Pseudonocardiales Bacteria;Bacteria_none;Actinobacteria;Actinomycetia;Pseudonocardiales;Pseudonocardiaceae
Alicyclobacillaceae 30 30 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Alicyclobacillaceae
Bacillaceae 115 115 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae
Bacillales_Incertae_sedis 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillales_Incertae_sedis
Listeriaceae 5 5 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Listeriaceae
Paenibacillaceae 91 91 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Paenibacillaceae
Planococcaceae 11 11 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Planococcaceae
Thermoactinomycetaceae 5 5 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Thermoactinomycetaceae
Aerococcaceae 16 16 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Aerococcaceae
Carnobacteriaceae 22 22 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Carnobacteriaceae
Enterococcaceae 4979 4979 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae
Lactobacillaceae 963 963 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae
Streptococcaceae 2070 2070 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae
Oscillospiraceae 5 5 Bacteria Bacteria_none Firmicutes Clostridia Eubacteriales Bacteria;Bacteria_none;Firmicutes;Clostridia;Eubacteriales;Oscillospiraceae
Erysipelotrichaceae 3 3 Bacteria Bacteria_none Firmicutes Erysipelotrichia Erysipelotrichales Bacteria;Bacteria_none;Firmicutes;Erysipelotrichia;Erysipelotrichales;Erysipelotrichaceae
Nitrobacteraceae 3 3 Bacteria Bacteria_none Proteobacteria Alphaproteobacteria Hyphomicrobiales Bacteria;Bacteria_none;Proteobacteria;Alphaproteobacteria;Hyphomicrobiales;Nitrobacteraceae
Rhodospirillaceae 3 3 Bacteria Bacteria_none Proteobacteria Alphaproteobacteria Rhodospirillales Bacteria;Bacteria_none;Proteobacteria;Alphaproteobacteria;Rhodospirillales;Rhodospirillaceae
Sphingomonadaceae 3 3 Bacteria Bacteria_none Proteobacteria Alphaproteobacteria Sphingomonadales Bacteria;Bacteria_none;Proteobacteria;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae
Burkholderiaceae 35 35 Bacteria Bacteria_none Proteobacteria Betaproteobacteria Burkholderiales Bacteria;Bacteria_none;Proteobacteria;Betaproteobacteria;Burkholderiales;Burkholderiaceae
Burkholderiales_Incertae_sedis 10 10 Bacteria Bacteria_none Proteobacteria Betaproteobacteria Burkholderiales Bacteria;Bacteria_none;Proteobacteria;Betaproteobacteria;Burkholderiales;Burkholderiales_Incertae_sedis
Sphaerotilaceae 4 4 Bacteria Bacteria_none Proteobacteria Betaproteobacteria Burkholderiales Bacteria;Bacteria_none;Proteobacteria;Betaproteobacteria;Burkholderiales;Sphaerotilaceae
Aeromonadaceae 2 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Aeromonadales Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Aeromonadales;Aeromonadaceae
Alteromonadaceae 293 293 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Alteromonadales Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Alteromonadales;Alteromonadaceae
Alteromonadales_Incertae_sedis 32 32 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Alteromonadales Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Alteromonadales;Alteromonadales_Incertae_sedis
Idiomarinaceae 3 3 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Alteromonadales Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Alteromonadales;Idiomarinaceae
Psychromonadaceae 32 32 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Alteromonadales Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Alteromonadales;Psychromonadaceae
Cellvibrionaceae 2 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Cellvibrionales Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Cellvibrionales;Cellvibrionaceae
Spongiibacteraceae 4 4 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Cellvibrionales Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Cellvibrionales;Spongiibacteraceae
Enterobacteriaceae 496 496 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae
Erwiniaceae 97 97 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Erwiniaceae
Hafniaceae 2 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Hafniaceae
Morganellaceae 2 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Morganellaceae
Pectobacteriaceae 8 8 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Pectobacteriaceae
Halomonadaceae 4 4 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Oceanospirillales Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Oceanospirillales;Halomonadaceae
Oceanospirillaceae 12 12 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Oceanospirillales Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Oceanospirillales;Oceanospirillaceae
Orbaceae 2 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Orbales Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Orbales;Orbaceae
Pseudomonadaceae 6 6 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Pseudomonadales Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae
Vibrionaceae 15 15 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Vibrionales Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Vibrionales;Vibrionaceae
Unknown 3253 3253 Unclassified Unknown Unknown Unknown Unknown Unclassified;Unknown;Unknown;Unknown;Unknown;Unknown

Abundance table for the genus rank.

Only taxa whose global abundance are above the abundance_threshold parameter will appear in the table.

genus barcode13 total superkingdom kingdom phylum class order family tax
Prauserella 2 2 Bacteria Bacteria_none Actinobacteria Actinomycetia Pseudonocardiales Pseudonocardiaceae Bacteria;Bacteria_none;Actinobacteria;Actinomycetia;Pseudonocardiales;Pseudonocardiaceae;Prauserella
Alicyclobacillus 28 28 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Alicyclobacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Alicyclobacillaceae;Alicyclobacillus
Tumebacillus 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Alicyclobacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Alicyclobacillaceae;Tumebacillus
Alkalicoccus 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Alkalicoccus
Alkalihalobacillus 7 7 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Alkalihalobacillus
Alteribacillus 3 3 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Alteribacillus
Anoxybacillus 5 5 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Anoxybacillus
Bacillus 6 6 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Bacillus
Caldibacillus 6 6 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Caldibacillus
Geobacillus 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Geobacillus
Gracilibacillus 3 3 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Gracilibacillus
Lentibacillus 3 3 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Lentibacillus
Lysinibacillus 5 5 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Lysinibacillus
Margalitia 4 4 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Margalitia
Mesobacillus 3 3 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Mesobacillus
Metabacillus 6 6 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Metabacillus
Oceanobacillus 12 12 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Oceanobacillus
Ornithinibacillus 4 4 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Ornithinibacillus
Peribacillus 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Peribacillus
Psychrobacillus 4 4 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Psychrobacillus
Pueribacillus 3 3 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Pueribacillus
Rossellomorea 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Rossellomorea
Salicibibacter 8 8 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Salicibibacter
Saliterribacillus 6 6 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Saliterribacillus
Siminovitchia 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Siminovitchia
Virgibacillus 6 6 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Virgibacillus
Weizmannia 3 3 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Weizmannia
Exiguobacterium 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillales_Incertae_sedis Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillales_Incertae_sedis;Exiguobacterium
Listeria 4 4 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Listeriaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Listeriaceae;Listeria
Brevibacillus 8 8 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Paenibacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Paenibacillaceae;Brevibacillus
Chengkuizengella 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Paenibacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Paenibacillaceae;Chengkuizengella
Cohnella 4 4 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Paenibacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Paenibacillaceae;Cohnella
Fontibacillus 4 4 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Paenibacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Paenibacillaceae;Fontibacillus
Paenibacillus 71 71 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Paenibacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Paenibacillaceae;Paenibacillus
Xylanibacillus 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Paenibacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Paenibacillaceae;Xylanibacillus
Jeotgalibacillus 3 3 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Planococcaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Planococcaceae;Jeotgalibacillus
Planococcus 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Planococcaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Planococcaceae;Planococcus
Savagea 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Planococcaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Planococcaceae;Savagea
Ureibacillus 3 3 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Planococcaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Planococcaceae;Ureibacillus
Lihuaxuella 3 3 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Thermoactinomycetaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Thermoactinomycetaceae;Lihuaxuella
Planifilum 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Thermoactinomycetaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Thermoactinomycetaceae;Planifilum
Abiotrophia 10 10 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Aerococcaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Aerococcaceae;Abiotrophia
Suicoccus 5 5 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Aerococcaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Aerococcaceae;Suicoccus
Granulicatella 8 8 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Carnobacteriaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Carnobacteriaceae;Granulicatella
Trichococcus 14 14 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Carnobacteriaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Carnobacteriaceae;Trichococcus
Enterococcus 4968 4968 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Enterococcaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus
Tetragenococcus 2 2 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Enterococcaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus
Vagococcus 7 7 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Enterococcaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Vagococcus
Companilactobacillus 4 4 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus
Lacticaseibacillus 280 280 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus
Lactiplantibacillus 179 179 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus
Lactobacillus 234 234 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus
Lapidilactobacillus 3 3 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lapidilactobacillus
Lentilactobacillus 6 6 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus
Ligilactobacillus 22 22 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Ligilactobacillus
Limosilactobacillus 153 153 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus
Liquorilactobacillus 64 64 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus
Paucilactobacillus 13 13 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Paucilactobacillus
Weissella 2 2 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Weissella
Lactococcus 1680 1680 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Streptococcaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus
Streptococcus 390 390 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Streptococcaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus
Acutalibacter 5 5 Bacteria Bacteria_none Firmicutes Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacteria_none;Firmicutes;Clostridia;Eubacteriales;Oscillospiraceae;Acutalibacter
Anaerolactibacter 2 2 Bacteria Bacteria_none Firmicutes Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Bacteria;Bacteria_none;Firmicutes;Erysipelotrichia;Erysipelotrichales;Erysipelotrichaceae;Anaerolactibacter
Bradyrhizobium 2 2 Bacteria Bacteria_none Proteobacteria Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bacteria;Bacteria_none;Proteobacteria;Alphaproteobacteria;Hyphomicrobiales;Nitrobacteraceae;Bradyrhizobium
Ferruginivarius 2 2 Bacteria Bacteria_none Proteobacteria Alphaproteobacteria Rhodospirillales Rhodospirillaceae Bacteria;Bacteria_none;Proteobacteria;Alphaproteobacteria;Rhodospirillales;Rhodospirillaceae;Ferruginivarius
Sphingomonas 3 3 Bacteria Bacteria_none Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Bacteria;Bacteria_none;Proteobacteria;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Sphingomonas
Cupriavidus 29 29 Bacteria Bacteria_none Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Bacteria;Bacteria_none;Proteobacteria;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Cupriavidus
Ralstonia 5 5 Bacteria Bacteria_none Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Bacteria;Bacteria_none;Proteobacteria;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Ralstonia
Aquabacterium 9 9 Bacteria Bacteria_none Proteobacteria Betaproteobacteria Burkholderiales Burkholderiales_Incertae_sedis Bacteria;Bacteria_none;Proteobacteria;Betaproteobacteria;Burkholderiales;Burkholderiales_Incertae_sedis;Aquabacterium
Inhella 2 2 Bacteria Bacteria_none Proteobacteria Betaproteobacteria Burkholderiales Sphaerotilaceae Bacteria;Bacteria_none;Proteobacteria;Betaproteobacteria;Burkholderiales;Sphaerotilaceae;Inhella
Tolumonas 2 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Aeromonadales Aeromonadaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Aeromonadales;Aeromonadaceae;Tolumonas
Alginatibacterium 9 9 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Alteromonadales Alteromonadaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Alteromonadales;Alteromonadaceae;Alginatibacterium
Alteromonas 176 176 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Alteromonadales Alteromonadaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Alteromonadales;Alteromonadaceae;Alteromonas
Glaciecola 28 28 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Alteromonadales Alteromonadaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Alteromonadales;Alteromonadaceae;Glaciecola
Paraglaciecola 15 15 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Alteromonadales Alteromonadaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Alteromonadales;Alteromonadaceae;Paraglaciecola
Planctobacterium 25 25 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Alteromonadales Alteromonadaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Alteromonadales;Alteromonadaceae;Planctobacterium
Salinimonas 39 39 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Alteromonadales Alteromonadaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Alteromonadales;Alteromonadaceae;Salinimonas
Neiella 32 32 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Alteromonadales Alteromonadales_Incertae_sedis Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Alteromonadales;Alteromonadales_Incertae_sedis;Neiella
Aliidiomarina 3 3 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Alteromonadales Idiomarinaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Alteromonadales;Idiomarinaceae;Aliidiomarina
Corallincola 32 32 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Alteromonadales Psychromonadaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Alteromonadales;Psychromonadaceae;Corallincola
Spongiibacter 4 4 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Cellvibrionales Spongiibacteraceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Cellvibrionales;Spongiibacteraceae;Spongiibacter
Citrobacter 77 77 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Citrobacter
Cronobacter 33 33 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Cronobacter
Enterobacter 65 65 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Enterobacter
Escherichia 69 69 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia
Klebsiella 4 4 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella
Kosakonia 8 8 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Kosakonia
Leclercia 3 3 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Leclercia
Phytobacter 10 10 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Phytobacter
Pluralibacter 35 35 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Pluralibacter
Pseudenterobacter 2 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Pseudenterobacter
Pseudocitrobacter 35 35 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Pseudocitrobacter
Salmonella 112 112 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Salmonella
Shigella 5 5 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Shigella
Siccibacter 36 36 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Siccibacter
Erwinia 8 8 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Erwiniaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Erwiniaceae;Erwinia
Mixta 56 56 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Erwiniaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Erwiniaceae;Mixta
Pantoea 2 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Erwiniaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Erwiniaceae;Pantoea
Rosenbergiella 28 28 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Erwiniaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Erwiniaceae;Rosenbergiella
Tatumella 2 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Erwiniaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Erwiniaceae;Tatumella
Morganella 2 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Morganellaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Morganellaceae;Morganella
Dickeya 2 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Pectobacteriaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Pectobacteriaceae;Dickeya
Pectobacterium 6 6 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Pectobacteriaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Pectobacteriaceae;Pectobacterium
Halomonas 3 3 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Oceanospirillales Halomonadaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Oceanospirillales;Halomonadaceae;Halomonas
Neptuniibacter 11 11 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Oceanospirillales Oceanospirillaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Oceanospirillales;Oceanospirillaceae;Neptuniibacter
Frischella 2 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Orbales Orbaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Orbales;Orbaceae;Frischella
Pseudomonas 6 6 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas
Photobacterium 6 6 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Vibrionales;Vibrionaceae;Photobacterium
Vibrio 8 8 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Vibrionales;Vibrionaceae;Vibrio
Unknown 3253 3253 Unclassified Unknown Unknown Unknown Unknown Unknown Unclassified;Unknown;Unknown;Unknown;Unknown;Unknown;Unknown

Abundance table for the species rank.

Only taxa whose global abundance are above the abundance_threshold parameter will appear in the table.

species barcode13 total superkingdom kingdom phylum class order family genus tax
Alicyclobacillus acidocaldarius 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Alicyclobacillaceae Alicyclobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Alicyclobacillaceae;Alicyclobacillus;Alicyclobacillus acidocaldarius
Alicyclobacillus contaminans 3 3 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Alicyclobacillaceae Alicyclobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Alicyclobacillaceae;Alicyclobacillus;Alicyclobacillus contaminans
Alicyclobacillus hesperidum 3 3 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Alicyclobacillaceae Alicyclobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Alicyclobacillaceae;Alicyclobacillus;Alicyclobacillus hesperidum
Alicyclobacillus kakegawensis 7 7 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Alicyclobacillaceae Alicyclobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Alicyclobacillaceae;Alicyclobacillus;Alicyclobacillus kakegawensis
Alicyclobacillus sacchari 3 3 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Alicyclobacillaceae Alicyclobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Alicyclobacillaceae;Alicyclobacillus;Alicyclobacillus sacchari
Alicyclobacillus sendaiensis 6 6 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Alicyclobacillaceae Alicyclobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Alicyclobacillaceae;Alicyclobacillus;Alicyclobacillus sendaiensis
Tumebacillus flagellatus 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Alicyclobacillaceae Tumebacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Alicyclobacillaceae;Tumebacillus;Tumebacillus flagellatus
Alkalicoccus urumqiensis 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Alkalicoccus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Alkalicoccus;Alkalicoccus urumqiensis
Alkalihalobacillus pseudalcaliphilus 3 3 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Alkalihalobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Alkalihalobacillus;Alkalihalobacillus pseudalcaliphilus
Alkalihalobacillus shacheensis 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Alkalihalobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Alkalihalobacillus;Alkalihalobacillus shacheensis
Alteribacillus bidgolensis 3 3 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Alteribacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Alteribacillus;Alteribacillus bidgolensis
Anoxybacillus kaynarcensis 3 3 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Anoxybacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Anoxybacillus;Anoxybacillus kaynarcensis
Bacillus phocaeensis 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Bacillus;Bacillus phocaeensis
Bacillus songklensis 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Bacillus;Bacillus songklensis
Caldibacillus pasinlerensis 6 6 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Caldibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Caldibacillus;Caldibacillus pasinlerensis
Geobacillus kaustophilus 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Geobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Geobacillus;Geobacillus kaustophilus
Gracilibacillus salitolerans 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Gracilibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Gracilibacillus;Gracilibacillus salitolerans
Lentibacillus persicus 3 3 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Lentibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Lentibacillus;Lentibacillus persicus
Lysinibacillus cavernae 3 3 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Lysinibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Lysinibacillus;Lysinibacillus cavernae
Margalitia camelliae 4 4 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Margalitia Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Margalitia;Margalitia camelliae
Mesobacillus persicus 3 3 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Mesobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Mesobacillus;Mesobacillus persicus
Metabacillus indicus 6 6 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Metabacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Metabacillus;Metabacillus indicus
Oceanobacillus limi 5 5 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Oceanobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Oceanobacillus;Oceanobacillus limi
Oceanobacillus longus 5 5 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Oceanobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Oceanobacillus;Oceanobacillus longus
Ornithinibacillus halophilus 4 4 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Ornithinibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Ornithinibacillus;Ornithinibacillus halophilus
Peribacillus asahii 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Peribacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Peribacillus;Peribacillus asahii
Psychrobacillus vulpis 4 4 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Psychrobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Psychrobacillus;Psychrobacillus vulpis
Pueribacillus theae 3 3 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Pueribacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Pueribacillus;Pueribacillus theae
Salicibibacter halophilus 7 7 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Salicibibacter Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Salicibibacter;Salicibibacter halophilus
Saliterribacillus persicus 6 6 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Saliterribacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Saliterribacillus;Saliterribacillus persicus
Siminovitchia fortis 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Siminovitchia Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Siminovitchia;Siminovitchia fortis
Virgibacillus marismortui 5 5 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Virgibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Virgibacillus;Virgibacillus marismortui
Weizmannia coagulans 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Weizmannia Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Weizmannia;Weizmannia coagulans
Listeria innocua 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Listeriaceae Listeria Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Listeriaceae;Listeria;Listeria innocua
Brevibacillus aydinogluensis 3 3 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Paenibacillaceae Brevibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Paenibacillaceae;Brevibacillus;Brevibacillus aydinogluensis
Brevibacillus sediminis 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Paenibacillaceae Brevibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Paenibacillaceae;Brevibacillus;Brevibacillus sediminis
Cohnella collisoli 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Paenibacillaceae Cohnella Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Paenibacillaceae;Cohnella;Cohnella collisoli
Cohnella fontinalis 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Paenibacillaceae Cohnella Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Paenibacillaceae;Cohnella;Cohnella fontinalis
Fontibacillus pullulanilyticus 4 4 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Paenibacillaceae Fontibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Paenibacillaceae;Fontibacillus;Fontibacillus pullulanilyticus
Paenibacillus aceris 6 6 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Paenibacillaceae Paenibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Paenibacillaceae;Paenibacillus;Paenibacillus aceris
Paenibacillus bovis 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Paenibacillaceae Paenibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Paenibacillaceae;Paenibacillus;Paenibacillus bovis
Paenibacillus larvae 4 4 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Paenibacillaceae Paenibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Paenibacillaceae;Paenibacillus;Paenibacillus larvae
Paenibacillus lutimineralis 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Paenibacillaceae Paenibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Paenibacillaceae;Paenibacillus;Paenibacillus lutimineralis
Paenibacillus lutrae 3 3 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Paenibacillaceae Paenibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Paenibacillaceae;Paenibacillus;Paenibacillus lutrae
Paenibacillus nematophilus 3 3 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Paenibacillaceae Paenibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Paenibacillaceae;Paenibacillus;Paenibacillus nematophilus
Paenibacillus sabinae 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Paenibacillaceae Paenibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Paenibacillaceae;Paenibacillus;Paenibacillus sabinae
Paenibacillus turicensis 21 21 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Paenibacillaceae Paenibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Paenibacillaceae;Paenibacillus;Paenibacillus turicensis
Paenibacillus typhae 6 6 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Paenibacillaceae Paenibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Paenibacillaceae;Paenibacillus;Paenibacillus typhae
Paenibacillus yonginensis 6 6 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Paenibacillaceae Paenibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Paenibacillaceae;Paenibacillus;Paenibacillus yonginensis
Xylanibacillus composti 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Paenibacillaceae Xylanibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Paenibacillaceae;Xylanibacillus;Xylanibacillus composti
Jeotgalibacillus malaysiensis 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Planococcaceae Jeotgalibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Planococcaceae;Jeotgalibacillus;Jeotgalibacillus malaysiensis
Savagea serpentis 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Planococcaceae Savagea Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Planococcaceae;Savagea;Savagea serpentis
Ureibacillus thermosphaericus 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Planococcaceae Ureibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Planococcaceae;Ureibacillus;Ureibacillus thermosphaericus
Lihuaxuella thermophila 3 3 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Thermoactinomycetaceae Lihuaxuella Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Thermoactinomycetaceae;Lihuaxuella;Lihuaxuella thermophila
Planifilum fulgidum 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Thermoactinomycetaceae Planifilum Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Thermoactinomycetaceae;Planifilum;Planifilum fulgidum
Abiotrophia defectiva 10 10 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Aerococcaceae Abiotrophia Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Aerococcaceae;Abiotrophia;Abiotrophia defectiva
Suicoccus acidiformans 5 5 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Aerococcaceae Suicoccus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Aerococcaceae;Suicoccus;Suicoccus acidiformans
Granulicatella adiacens 6 6 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Carnobacteriaceae Granulicatella Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Carnobacteriaceae;Granulicatella;Granulicatella adiacens
Granulicatella elegans 2 2 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Carnobacteriaceae Granulicatella Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Carnobacteriaceae;Granulicatella;Granulicatella elegans
Trichococcus collinsii 5 5 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Carnobacteriaceae Trichococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Carnobacteriaceae;Trichococcus;Trichococcus collinsii
Trichococcus palustris 2 2 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Carnobacteriaceae Trichococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Carnobacteriaceae;Trichococcus;Trichococcus palustris
Trichococcus pasteurii 6 6 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Carnobacteriaceae Trichococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Carnobacteriaceae;Trichococcus;Trichococcus pasteurii
Enterococcus alishanensis 2 2 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus alishanensis
Enterococcus asini 178 178 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus asini
Enterococcus avium 2 2 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus avium
Enterococcus camelliae 3 3 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus camelliae
Enterococcus casseliflavus 6 6 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus casseliflavus
Enterococcus dispar 165 165 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus dispar
Enterococcus durans 995 995 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus durans
Enterococcus faecalis 374 374 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus faecalis
Enterococcus faecium 1943 1943 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus faecium
Enterococcus gallinarum 41 41 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus gallinarum
Enterococcus hirae 1000 1000 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus hirae
Enterococcus innesii 3 3 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus innesii
Enterococcus italicus 3 3 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus italicus
Enterococcus lactis 42 42 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus lactis
Enterococcus malodoratus 4 4 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus malodoratus
Enterococcus mediterraneensis 46 46 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus mediterraneensis
Enterococcus mundtii 69 69 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus mundtii
Enterococcus pseudoavium 13 13 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus pseudoavium
Enterococcus ratti 3 3 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus ratti
Enterococcus saccharolyticus 52 52 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus saccharolyticus
Enterococcus sulfureus 2 2 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus sulfureus
Enterococcus thailandicus 6 6 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus thailandicus
Enterococcus ureilyticus 2 2 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus ureilyticus
Enterococcus villorum 2 2 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus villorum
Vagococcus carniphilus 2 2 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Enterococcaceae Vagococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Vagococcus;Vagococcus carniphilus
Vagococcus teuberi 2 2 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Enterococcaceae Vagococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Vagococcus;Vagococcus teuberi
Lacticaseibacillus casei 54 54 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus;Lacticaseibacillus casei
Lacticaseibacillus chiayiensis 19 19 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus;Lacticaseibacillus chiayiensis
Lacticaseibacillus paracasei 91 91 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus;Lacticaseibacillus paracasei
Lacticaseibacillus rhamnosus 88 88 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus;Lacticaseibacillus rhamnosus
Lacticaseibacillus saniviri 4 4 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus;Lacticaseibacillus saniviri
Lacticaseibacillus zeae 20 20 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus;Lacticaseibacillus zeae
Lactiplantibacillus argentoratensis 18 18 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus;Lactiplantibacillus argentoratensis
Lactiplantibacillus paraplantarum 2 2 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus;Lactiplantibacillus paraplantarum
Lactiplantibacillus pentosus 41 41 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus;Lactiplantibacillus pentosus
Lactiplantibacillus plajomi 15 15 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus;Lactiplantibacillus plajomi
Lactiplantibacillus plantarum 102 102 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus;Lactiplantibacillus plantarum
Lactobacillus acidophilus 113 113 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus acidophilus
Lactobacillus amylolyticus 2 2 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus amylolyticus
Lactobacillus amylovorus 5 5 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus amylovorus
Lactobacillus crispatus 6 6 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus crispatus
Lactobacillus delbrueckii 50 50 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus delbrueckii
Lactobacillus gallinarum 7 7 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus gallinarum
Lactobacillus gasseri 26 26 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus gasseri
Lactobacillus hamsteri 2 2 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus hamsteri
Lactobacillus helveticus 9 9 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus helveticus
Lactobacillus kefiranofaciens 4 4 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus kefiranofaciens
Lactobacillus paragasseri 5 5 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus paragasseri
Lentilactobacillus curieae 3 3 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus;Lentilactobacillus curieae
Ligilactobacillus salivarius 22 22 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Ligilactobacillus;Ligilactobacillus salivarius
Limosilactobacillus agrestis 5 5 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus;Limosilactobacillus agrestis
Limosilactobacillus balticus 4 4 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus;Limosilactobacillus balticus
Limosilactobacillus fermentum 137 137 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus;Limosilactobacillus fermentum
Limosilactobacillus reuteri 7 7 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus;Limosilactobacillus reuteri
Liquorilactobacillus satsumensis 61 61 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Liquorilactobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus;Liquorilactobacillus satsumensis
Paucilactobacillus suebicus 8 8 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Paucilactobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Paucilactobacillus;Paucilactobacillus suebicus
Paucilactobacillus wasatchensis 5 5 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Paucilactobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Paucilactobacillus;Paucilactobacillus wasatchensis
Lactococcus allomyrinae 67 67 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Streptococcaceae Lactococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus;Lactococcus allomyrinae
Lactococcus cremoris 330 330 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Streptococcaceae Lactococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus;Lactococcus cremoris
Lactococcus formosensis 11 11 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Streptococcaceae Lactococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus;Lactococcus formosensis
Lactococcus fujiensis 3 3 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Streptococcaceae Lactococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus;Lactococcus fujiensis
Lactococcus garvieae 2 2 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Streptococcaceae Lactococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus;Lactococcus garvieae
Lactococcus lactis 1060 1060 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Streptococcaceae Lactococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus;Lactococcus lactis
Lactococcus protaetiae 204 204 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Streptococcaceae Lactococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus;Lactococcus protaetiae
Streptococcus cristatus 6 6 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus cristatus
Streptococcus equinus 3 3 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus equinus
Streptococcus gordonii 3 3 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus gordonii
Streptococcus lutetiensis 2 2 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus lutetiensis
Streptococcus macedonicus 2 2 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus macedonicus
Streptococcus mitis 4 4 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus mitis
Streptococcus oralis 8 8 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus oralis
Streptococcus penaeicida 2 2 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus penaeicida
Streptococcus salivarius 11 11 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus salivarius
Streptococcus suis 2 2 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus suis
Streptococcus thermophilus 319 319 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus thermophilus
Streptococcus vestibularis 8 8 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus vestibularis
Streptococcus vicugnae 2 2 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus vicugnae
Streptococcus zalophi 3 3 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus zalophi
Acutalibacter muris 5 5 Bacteria Bacteria_none Firmicutes Clostridia Eubacteriales Oscillospiraceae Acutalibacter Bacteria;Bacteria_none;Firmicutes;Clostridia;Eubacteriales;Oscillospiraceae;Acutalibacter;Acutalibacter muris
Anaerolactibacter massiliensis 2 2 Bacteria Bacteria_none Firmicutes Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Anaerolactibacter Bacteria;Bacteria_none;Firmicutes;Erysipelotrichia;Erysipelotrichales;Erysipelotrichaceae;Anaerolactibacter;Anaerolactibacter massiliensis
Ferruginivarius sediminum 2 2 Bacteria Bacteria_none Proteobacteria Alphaproteobacteria Rhodospirillales Rhodospirillaceae Ferruginivarius Bacteria;Bacteria_none;Proteobacteria;Alphaproteobacteria;Rhodospirillales;Rhodospirillaceae;Ferruginivarius;Ferruginivarius sediminum
Sphingomonas leidyi 3 3 Bacteria Bacteria_none Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Bacteria;Bacteria_none;Proteobacteria;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Sphingomonas;Sphingomonas leidyi
Cupriavidus agavae 12 12 Bacteria Bacteria_none Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Bacteria;Bacteria_none;Proteobacteria;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Cupriavidus;Cupriavidus agavae
Cupriavidus alkaliphilus 2 2 Bacteria Bacteria_none Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Bacteria;Bacteria_none;Proteobacteria;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Cupriavidus;Cupriavidus alkaliphilus
Cupriavidus metallidurans 10 10 Bacteria Bacteria_none Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Bacteria;Bacteria_none;Proteobacteria;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Cupriavidus;Cupriavidus metallidurans
Cupriavidus taiwanensis 2 2 Bacteria Bacteria_none Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Bacteria;Bacteria_none;Proteobacteria;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Cupriavidus;Cupriavidus taiwanensis
Ralstonia pickettii 2 2 Bacteria Bacteria_none Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Ralstonia Bacteria;Bacteria_none;Proteobacteria;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Ralstonia;Ralstonia pickettii
Ralstonia solanacearum 2 2 Bacteria Bacteria_none Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Ralstonia Bacteria;Bacteria_none;Proteobacteria;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Ralstonia;Ralstonia solanacearum
Aquabacterium citratiphilum 9 9 Bacteria Bacteria_none Proteobacteria Betaproteobacteria Burkholderiales Burkholderiales_Incertae_sedis Aquabacterium Bacteria;Bacteria_none;Proteobacteria;Betaproteobacteria;Burkholderiales;Burkholderiales_Incertae_sedis;Aquabacterium;Aquabacterium citratiphilum
Tolumonas auensis 2 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Aeromonadales Aeromonadaceae Tolumonas Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Aeromonadales;Aeromonadaceae;Tolumonas;Tolumonas auensis
Alginatibacterium sediminis 9 9 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Alteromonadales Alteromonadaceae Alginatibacterium Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Alteromonadales;Alteromonadaceae;Alginatibacterium;Alginatibacterium sediminis
Alteromonas australica 3 3 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Alteromonadales Alteromonadaceae Alteromonas Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Alteromonadales;Alteromonadaceae;Alteromonas;Alteromonas australica
Alteromonas mediterranea 160 160 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Alteromonadales Alteromonadaceae Alteromonas Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Alteromonadales;Alteromonadaceae;Alteromonas;Alteromonas mediterranea
Alteromonas oceani 13 13 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Alteromonadales Alteromonadaceae Alteromonas Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Alteromonadales;Alteromonadaceae;Alteromonas;Alteromonas oceani
Glaciecola nitratireducens 2 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Alteromonadales Alteromonadaceae Glaciecola Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Alteromonadales;Alteromonadaceae;Glaciecola;Glaciecola nitratireducens
Glaciecola pallidula 2 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Alteromonadales Alteromonadaceae Glaciecola Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Alteromonadales;Alteromonadaceae;Glaciecola;Glaciecola pallidula
Glaciecola punicea 24 24 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Alteromonadales Alteromonadaceae Glaciecola Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Alteromonadales;Alteromonadaceae;Glaciecola;Glaciecola punicea
Paraglaciecola oceanifecundans 13 13 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Alteromonadales Alteromonadaceae Paraglaciecola Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Alteromonadales;Alteromonadaceae;Paraglaciecola;Paraglaciecola oceanifecundans
Planctobacterium marinum 25 25 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Alteromonadales Alteromonadaceae Planctobacterium Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Alteromonadales;Alteromonadaceae;Planctobacterium;Planctobacterium marinum
Salinimonas sediminis 38 38 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Alteromonadales Alteromonadaceae Salinimonas Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Alteromonadales;Alteromonadaceae;Salinimonas;Salinimonas sediminis
Neiella holothuriorum 32 32 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Alteromonadales Alteromonadales_Incertae_sedis Neiella Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Alteromonadales;Alteromonadales_Incertae_sedis;Neiella;Neiella holothuriorum
Aliidiomarina soli 3 3 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Alteromonadales Idiomarinaceae Aliidiomarina Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Alteromonadales;Idiomarinaceae;Aliidiomarina;Aliidiomarina soli
Corallincola holothuriorum 32 32 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Alteromonadales Psychromonadaceae Corallincola Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Alteromonadales;Psychromonadaceae;Corallincola;Corallincola holothuriorum
Spongiibacter marinus 2 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Cellvibrionales Spongiibacteraceae Spongiibacter Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Cellvibrionales;Spongiibacteraceae;Spongiibacter;Spongiibacter marinus
Spongiibacter tropicus 2 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Cellvibrionales Spongiibacteraceae Spongiibacter Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Cellvibrionales;Spongiibacteraceae;Spongiibacter;Spongiibacter tropicus
Citrobacter rodentium 15 15 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Citrobacter;Citrobacter rodentium
Citrobacter sedlakii 21 21 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Citrobacter;Citrobacter sedlakii
Citrobacter telavivensis 39 39 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Citrobacter;Citrobacter telavivensis
Cronobacter turicensis 33 33 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Cronobacter Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Cronobacter;Cronobacter turicensis
Enterobacter chuandaensis 4 4 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Enterobacter;Enterobacter chuandaensis
Enterobacter quasihormaechei 55 55 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Enterobacter;Enterobacter quasihormaechei
Enterobacter sichuanensis 5 5 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Enterobacter;Enterobacter sichuanensis
Escherichia coli 4 4 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia;Escherichia coli
Escherichia fergusonii 33 33 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia;Escherichia fergusonii
Escherichia marmotae 31 31 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia;Escherichia marmotae
Klebsiella michiganensis 3 3 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella;Klebsiella michiganensis
Kosakonia pseudosacchari 2 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Kosakonia Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Kosakonia;Kosakonia pseudosacchari
Kosakonia quasisacchari 2 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Kosakonia Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Kosakonia;Kosakonia quasisacchari
Kosakonia sacchari 4 4 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Kosakonia Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Kosakonia;Kosakonia sacchari
Leclercia adecarboxylata 3 3 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Leclercia Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Leclercia;Leclercia adecarboxylata
Phytobacter massiliensis 2 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Phytobacter Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Phytobacter;Phytobacter massiliensis
Phytobacter palmae 8 8 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Phytobacter Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Phytobacter;Phytobacter palmae
Pluralibacter pyrinus 35 35 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Pluralibacter Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Pluralibacter;Pluralibacter pyrinus
Pseudenterobacter timonensis 2 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Pseudenterobacter Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Pseudenterobacter;Pseudenterobacter timonensis
Pseudocitrobacter vendiensis 35 35 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Pseudocitrobacter Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Pseudocitrobacter;Pseudocitrobacter vendiensis
Salmonella bongori 44 44 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Salmonella;Salmonella bongori
Salmonella enterica 68 68 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Salmonella;Salmonella enterica
Shigella boydii 2 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Shigella Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Shigella;Shigella boydii
Shigella sonnei 3 3 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Shigella Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Shigella;Shigella sonnei
Siccibacter colletis 36 36 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Siccibacter Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Siccibacter;Siccibacter colletis
Erwinia billingiae 6 6 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Erwiniaceae Erwinia Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Erwiniaceae;Erwinia;Erwinia billingiae
Erwinia tasmaniensis 2 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Erwiniaceae Erwinia Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Erwiniaceae;Erwinia;Erwinia tasmaniensis
Mixta intestinalis 54 54 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Erwiniaceae Mixta Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Erwiniaceae;Mixta;Mixta intestinalis
Mixta theicola 2 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Erwiniaceae Mixta Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Erwiniaceae;Mixta;Mixta theicola
Rosenbergiella australiborealis 4 4 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Erwiniaceae Rosenbergiella Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Erwiniaceae;Rosenbergiella;Rosenbergiella australiborealis
Rosenbergiella collisarenosi 14 14 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Erwiniaceae Rosenbergiella Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Erwiniaceae;Rosenbergiella;Rosenbergiella collisarenosi
Rosenbergiella epipactidis 10 10 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Erwiniaceae Rosenbergiella Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Erwiniaceae;Rosenbergiella;Rosenbergiella epipactidis
Tatumella punctata 2 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Erwiniaceae Tatumella Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Erwiniaceae;Tatumella;Tatumella punctata
Pectobacterium betavasculorum 2 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Pectobacteriaceae Pectobacterium Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Pectobacteriaceae;Pectobacterium;Pectobacterium betavasculorum
Pectobacterium carotovorum 2 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Pectobacteriaceae Pectobacterium Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Pectobacteriaceae;Pectobacterium;Pectobacterium carotovorum
Neptuniibacter caesariensis 11 11 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Oceanospirillales Oceanospirillaceae Neptuniibacter Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Oceanospirillales;Oceanospirillaceae;Neptuniibacter;Neptuniibacter caesariensis
Frischella japonica 2 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Orbales Orbaceae Frischella Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Orbales;Orbaceae;Frischella;Frischella japonica
Pseudomonas knackmussii 2 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas;Pseudomonas knackmussii
Pseudomonas leptonychotis 2 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas;Pseudomonas leptonychotis
Photobacterium damselae 3 3 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Vibrionales;Vibrionaceae;Photobacterium;Photobacterium damselae
Photobacterium frigidiphilum 2 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Vibrionales;Vibrionaceae;Photobacterium;Photobacterium frigidiphilum
Unknown 3253 3253 Unclassified Unknown Unknown Unknown Unknown Unknown Unknown Unclassified;Unknown;Unknown;Unknown;Unknown;Unknown;Unknown;Unknown

Rarefied abundance table for the phylum rank.

All samples have been randomly subsetted to have the same number of reads.

phylum barcode13 total superkingdom kingdom tax
Actinobacteria 4 4 Bacteria Bacteria_none Bacteria;Bacteria_none;Actinobacteria
Firmicutes 7917 7898 Bacteria Bacteria_none Bacteria;Bacteria_none;Firmicutes
Proteobacteria 1024 1026 Bacteria Bacteria_none Bacteria;Bacteria_none;Proteobacteria
Unknown 3083 3100 Unclassified Unknown Unclassified;Unknown;Unknown

Rarefied abundance table for the class rank.

All samples have been randomly subsetted to have the same number of reads.

class barcode13 total superkingdom kingdom phylum tax
Actinomycetia 3 3 Bacteria Bacteria_none Actinobacteria Bacteria;Bacteria_none;Actinobacteria;Actinomycetia
Bacilli 7881 7880 Bacteria Bacteria_none Firmicutes Bacteria;Bacteria_none;Firmicutes;Bacilli
Clostridia 7 7 Bacteria Bacteria_none Firmicutes Bacteria;Bacteria_none;Firmicutes;Clostridia
Erysipelotrichia 3 3 Bacteria Bacteria_none Firmicutes Bacteria;Bacteria_none;Firmicutes;Erysipelotrichia
Alphaproteobacteria 13 13 Bacteria Bacteria_none Proteobacteria Bacteria;Bacteria_none;Proteobacteria;Alphaproteobacteria
Betaproteobacteria 46 49 Bacteria Bacteria_none Proteobacteria Bacteria;Bacteria_none;Proteobacteria;Betaproteobacteria
Gammaproteobacteria 966 978 Bacteria Bacteria_none Proteobacteria Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria
Unknown 3108 3094 Unclassified Unknown Unknown Unclassified;Unknown;Unknown;Unknown

Rarefied abundance table for the order rank.

All samples have been randomly subsetted to have the same number of reads.

order barcode13 total superkingdom kingdom phylum class tax
Pseudonocardiales 2 2 Bacteria Bacteria_none Actinobacteria Actinomycetia Bacteria;Bacteria_none;Actinobacteria;Actinomycetia;Pseudonocardiales
Bacillales 246 251 Bacteria Bacteria_none Firmicutes Bacilli Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales
Lactobacillales 7650 7637 Bacteria Bacteria_none Firmicutes Bacilli Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales
Eubacteriales 6 6 Bacteria Bacteria_none Firmicutes Clostridia Bacteria;Bacteria_none;Firmicutes;Clostridia;Eubacteriales
Erysipelotrichales 3 3 Bacteria Bacteria_none Firmicutes Erysipelotrichia Bacteria;Bacteria_none;Firmicutes;Erysipelotrichia;Erysipelotrichales
Hyphomicrobiales 5 5 Bacteria Bacteria_none Proteobacteria Alphaproteobacteria Bacteria;Bacteria_none;Proteobacteria;Alphaproteobacteria;Hyphomicrobiales
Rhodospirillales 4 4 Bacteria Bacteria_none Proteobacteria Alphaproteobacteria Bacteria;Bacteria_none;Proteobacteria;Alphaproteobacteria;Rhodospirillales
Sphingomonadales 3 3 Bacteria Bacteria_none Proteobacteria Alphaproteobacteria Bacteria;Bacteria_none;Proteobacteria;Alphaproteobacteria;Sphingomonadales
Burkholderiales 46 48 Bacteria Bacteria_none Proteobacteria Betaproteobacteria Bacteria;Bacteria_none;Proteobacteria;Betaproteobacteria;Burkholderiales
Aeromonadales 1 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Aeromonadales
Alteromonadales 339 343 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Alteromonadales
Cellvibrionales 7 7 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Cellvibrionales
Enterobacterales 578 575 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales
Oceanospirillales 18 16 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Oceanospirillales
Orbales 1 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Orbales
Pseudomonadales 6 6 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Pseudomonadales
Vibrionales 14 15 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Vibrionales
Unknown 3092 3096 Unclassified Unknown Unknown Unknown Unclassified;Unknown;Unknown;Unknown;Unknown

Rarefied abundance table for the family rank.

All samples have been randomly subsetted to have the same number of reads.

family barcode13 total superkingdom kingdom phylum class order tax
Pseudonocardiaceae 2 2 Bacteria Bacteria_none Actinobacteria Actinomycetia Pseudonocardiales Bacteria;Bacteria_none;Actinobacteria;Actinomycetia;Pseudonocardiales;Pseudonocardiaceae
Alicyclobacillaceae 28 28 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Alicyclobacillaceae
Bacillaceae 113 109 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae
Bacillales_Incertae_sedis 2 1 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillales_Incertae_sedis
Listeriaceae 4 5 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Listeriaceae
Paenibacillaceae 87 87 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Paenibacillaceae
Planococcaceae 11 11 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Planococcaceae
Thermoactinomycetaceae 5 4 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Thermoactinomycetaceae
Aerococcaceae 15 14 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Aerococcaceae
Carnobacteriaceae 21 22 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Carnobacteriaceae
Enterococcaceae 4735 4742 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae
Lactobacillaceae 916 911 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae
Streptococcaceae 1967 1949 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae
Oscillospiraceae 5 5 Bacteria Bacteria_none Firmicutes Clostridia Eubacteriales Bacteria;Bacteria_none;Firmicutes;Clostridia;Eubacteriales;Oscillospiraceae
Erysipelotrichaceae 3 3 Bacteria Bacteria_none Firmicutes Erysipelotrichia Erysipelotrichales Bacteria;Bacteria_none;Firmicutes;Erysipelotrichia;Erysipelotrichales;Erysipelotrichaceae
Nitrobacteraceae 3 3 Bacteria Bacteria_none Proteobacteria Alphaproteobacteria Hyphomicrobiales Bacteria;Bacteria_none;Proteobacteria;Alphaproteobacteria;Hyphomicrobiales;Nitrobacteraceae
Rhodospirillaceae 3 2 Bacteria Bacteria_none Proteobacteria Alphaproteobacteria Rhodospirillales Bacteria;Bacteria_none;Proteobacteria;Alphaproteobacteria;Rhodospirillales;Rhodospirillaceae
Sphingomonadaceae 3 3 Bacteria Bacteria_none Proteobacteria Alphaproteobacteria Sphingomonadales Bacteria;Bacteria_none;Proteobacteria;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae
Burkholderiaceae 33 35 Bacteria Bacteria_none Proteobacteria Betaproteobacteria Burkholderiales Bacteria;Bacteria_none;Proteobacteria;Betaproteobacteria;Burkholderiales;Burkholderiaceae
Burkholderiales_Incertae_sedis 8 9 Bacteria Bacteria_none Proteobacteria Betaproteobacteria Burkholderiales Bacteria;Bacteria_none;Proteobacteria;Betaproteobacteria;Burkholderiales;Burkholderiales_Incertae_sedis
Sphaerotilaceae 4 4 Bacteria Bacteria_none Proteobacteria Betaproteobacteria Burkholderiales Bacteria;Bacteria_none;Proteobacteria;Betaproteobacteria;Burkholderiales;Sphaerotilaceae
Aeromonadaceae 2 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Aeromonadales Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Aeromonadales;Aeromonadaceae
Alteromonadaceae 280 277 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Alteromonadales Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Alteromonadales;Alteromonadaceae
Alteromonadales_Incertae_sedis 30 30 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Alteromonadales Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Alteromonadales;Alteromonadales_Incertae_sedis
Idiomarinaceae 3 3 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Alteromonadales Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Alteromonadales;Idiomarinaceae
Psychromonadaceae 28 29 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Alteromonadales Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Alteromonadales;Psychromonadaceae
Cellvibrionaceae 2 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Cellvibrionales Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Cellvibrionales;Cellvibrionaceae
Spongiibacteraceae 4 4 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Cellvibrionales Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Cellvibrionales;Spongiibacteraceae
Enterobacteriaceae 477 476 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae
Erwiniaceae 93 93 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Erwiniaceae
Hafniaceae 1 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Hafniaceae
Morganellaceae 2 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Morganellaceae
Pectobacteriaceae 8 8 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Pectobacteriaceae
Halomonadaceae 4 4 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Oceanospirillales Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Oceanospirillales;Halomonadaceae
Oceanospirillaceae 11 10 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Oceanospirillales Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Oceanospirillales;Oceanospirillaceae
Orbaceae 2 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Orbales Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Orbales;Orbaceae
Pseudomonadaceae 6 5 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Pseudomonadales Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae
Vibrionaceae 15 13 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Vibrionales Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Vibrionales;Vibrionaceae
Unknown 3073 3098 Unclassified Unknown Unknown Unknown Unknown Unclassified;Unknown;Unknown;Unknown;Unknown;Unknown

Rarefied abundance table for the genus rank.

All samples have been randomly subsetted to have the same number of reads.

genus barcode13 total superkingdom kingdom phylum class order family tax
Prauserella 2 2 Bacteria Bacteria_none Actinobacteria Actinomycetia Pseudonocardiales Pseudonocardiaceae Bacteria;Bacteria_none;Actinobacteria;Actinomycetia;Pseudonocardiales;Pseudonocardiaceae;Prauserella
Alicyclobacillus 28 25 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Alicyclobacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Alicyclobacillaceae;Alicyclobacillus
Tumebacillus 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Alicyclobacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Alicyclobacillaceae;Tumebacillus
Alkalicoccus 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Alkalicoccus
Alkalihalobacillus 7 7 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Alkalihalobacillus
Alteribacillus 3 3 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Alteribacillus
Anoxybacillus 5 5 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Anoxybacillus
Bacillus 5 6 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Bacillus
Caldibacillus 6 6 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Caldibacillus
Geobacillus 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Geobacillus
Gracilibacillus 2 3 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Gracilibacillus
Lentibacillus 3 3 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Lentibacillus
Lysinibacillus 5 5 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Lysinibacillus
Margalitia 4 4 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Margalitia
Mesobacillus 3 3 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Mesobacillus
Metabacillus 5 6 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Metabacillus
Oceanobacillus 12 12 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Oceanobacillus
Ornithinibacillus 3 4 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Ornithinibacillus
Peribacillus 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Peribacillus
Psychrobacillus 2 4 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Psychrobacillus
Pueribacillus 3 3 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Pueribacillus
Rossellomorea 2 1 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Rossellomorea
Salicibibacter 8 7 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Salicibibacter
Saliterribacillus 6 6 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Saliterribacillus
Siminovitchia 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Siminovitchia
Virgibacillus 6 6 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Virgibacillus
Weizmannia 3 3 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Weizmannia
Exiguobacterium 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillales_Incertae_sedis Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillales_Incertae_sedis;Exiguobacterium
Listeria 4 3 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Listeriaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Listeriaceae;Listeria
Brevibacillus 6 8 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Paenibacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Paenibacillaceae;Brevibacillus
Chengkuizengella 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Paenibacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Paenibacillaceae;Chengkuizengella
Cohnella 4 4 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Paenibacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Paenibacillaceae;Cohnella
Fontibacillus 4 4 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Paenibacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Paenibacillaceae;Fontibacillus
Paenibacillus 66 66 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Paenibacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Paenibacillaceae;Paenibacillus
Xylanibacillus 1 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Paenibacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Paenibacillaceae;Xylanibacillus
Jeotgalibacillus 3 3 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Planococcaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Planococcaceae;Jeotgalibacillus
Planococcus 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Planococcaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Planococcaceae;Planococcus
Savagea 1 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Planococcaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Planococcaceae;Savagea
Ureibacillus 3 3 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Planococcaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Planococcaceae;Ureibacillus
Lihuaxuella 3 3 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Thermoactinomycetaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Thermoactinomycetaceae;Lihuaxuella
Planifilum 2 1 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Thermoactinomycetaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Thermoactinomycetaceae;Planifilum
Abiotrophia 10 10 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Aerococcaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Aerococcaceae;Abiotrophia
Suicoccus 5 5 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Aerococcaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Aerococcaceae;Suicoccus
Granulicatella 6 7 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Carnobacteriaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Carnobacteriaceae;Granulicatella
Trichococcus 14 13 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Carnobacteriaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Carnobacteriaceae;Trichococcus
Enterococcus 4727 4712 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Enterococcaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus
Tetragenococcus 2 2 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Enterococcaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus
Vagococcus 7 6 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Enterococcaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Vagococcus
Companilactobacillus 4 3 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus
Lacticaseibacillus 257 269 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus
Lactiplantibacillus 168 170 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus
Lactobacillus 221 221 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus
Lapidilactobacillus 3 3 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lapidilactobacillus
Lentilactobacillus 6 5 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus
Ligilactobacillus 21 21 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Ligilactobacillus
Limosilactobacillus 144 145 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus
Liquorilactobacillus 61 62 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus
Paucilactobacillus 13 13 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Paucilactobacillus
Weissella 2 2 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Weissella
Lactococcus 1592 1599 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Streptococcaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus
Streptococcus 373 369 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Streptococcaceae Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus
Acutalibacter 5 5 Bacteria Bacteria_none Firmicutes Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacteria_none;Firmicutes;Clostridia;Eubacteriales;Oscillospiraceae;Acutalibacter
Anaerolactibacter 1 2 Bacteria Bacteria_none Firmicutes Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Bacteria;Bacteria_none;Firmicutes;Erysipelotrichia;Erysipelotrichales;Erysipelotrichaceae;Anaerolactibacter
Bradyrhizobium 2 2 Bacteria Bacteria_none Proteobacteria Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bacteria;Bacteria_none;Proteobacteria;Alphaproteobacteria;Hyphomicrobiales;Nitrobacteraceae;Bradyrhizobium
Ferruginivarius 2 2 Bacteria Bacteria_none Proteobacteria Alphaproteobacteria Rhodospirillales Rhodospirillaceae Bacteria;Bacteria_none;Proteobacteria;Alphaproteobacteria;Rhodospirillales;Rhodospirillaceae;Ferruginivarius
Sphingomonas 3 3 Bacteria Bacteria_none Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Bacteria;Bacteria_none;Proteobacteria;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Sphingomonas
Cupriavidus 29 27 Bacteria Bacteria_none Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Bacteria;Bacteria_none;Proteobacteria;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Cupriavidus
Ralstonia 5 5 Bacteria Bacteria_none Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Bacteria;Bacteria_none;Proteobacteria;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Ralstonia
Aquabacterium 9 9 Bacteria Bacteria_none Proteobacteria Betaproteobacteria Burkholderiales Burkholderiales_Incertae_sedis Bacteria;Bacteria_none;Proteobacteria;Betaproteobacteria;Burkholderiales;Burkholderiales_Incertae_sedis;Aquabacterium
Inhella 2 2 Bacteria Bacteria_none Proteobacteria Betaproteobacteria Burkholderiales Sphaerotilaceae Bacteria;Bacteria_none;Proteobacteria;Betaproteobacteria;Burkholderiales;Sphaerotilaceae;Inhella
Tolumonas 2 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Aeromonadales Aeromonadaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Aeromonadales;Aeromonadaceae;Tolumonas
Alginatibacterium 9 9 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Alteromonadales Alteromonadaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Alteromonadales;Alteromonadaceae;Alginatibacterium
Alteromonas 170 171 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Alteromonadales Alteromonadaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Alteromonadales;Alteromonadaceae;Alteromonas
Glaciecola 27 25 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Alteromonadales Alteromonadaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Alteromonadales;Alteromonadaceae;Glaciecola
Paraglaciecola 14 13 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Alteromonadales Alteromonadaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Alteromonadales;Alteromonadaceae;Paraglaciecola
Planctobacterium 23 25 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Alteromonadales Alteromonadaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Alteromonadales;Alteromonadaceae;Planctobacterium
Salinimonas 37 37 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Alteromonadales Alteromonadaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Alteromonadales;Alteromonadaceae;Salinimonas
Neiella 31 29 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Alteromonadales Alteromonadales_Incertae_sedis Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Alteromonadales;Alteromonadales_Incertae_sedis;Neiella
Aliidiomarina 3 3 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Alteromonadales Idiomarinaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Alteromonadales;Idiomarinaceae;Aliidiomarina
Corallincola 31 31 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Alteromonadales Psychromonadaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Alteromonadales;Psychromonadaceae;Corallincola
Spongiibacter 4 4 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Cellvibrionales Spongiibacteraceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Cellvibrionales;Spongiibacteraceae;Spongiibacter
Citrobacter 74 76 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Citrobacter
Cronobacter 33 29 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Cronobacter
Enterobacter 61 62 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Enterobacter
Escherichia 67 64 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia
Klebsiella 4 4 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella
Kosakonia 8 7 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Kosakonia
Leclercia 3 3 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Leclercia
Phytobacter 10 10 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Phytobacter
Pluralibacter 33 35 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Pluralibacter
Pseudenterobacter 2 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Pseudenterobacter
Pseudocitrobacter 32 34 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Pseudocitrobacter
Salmonella 108 108 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Salmonella
Shigella 5 5 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Shigella
Siccibacter 31 35 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Siccibacter
Erwinia 8 8 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Erwiniaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Erwiniaceae;Erwinia
Mixta 51 55 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Erwiniaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Erwiniaceae;Mixta
Pantoea 1 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Erwiniaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Erwiniaceae;Pantoea
Rosenbergiella 27 26 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Erwiniaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Erwiniaceae;Rosenbergiella
Tatumella 2 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Erwiniaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Erwiniaceae;Tatumella
Morganella 2 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Morganellaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Morganellaceae;Morganella
Dickeya 2 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Pectobacteriaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Pectobacteriaceae;Dickeya
Pectobacterium 6 6 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Pectobacteriaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Pectobacteriaceae;Pectobacterium
Halomonas 3 3 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Oceanospirillales Halomonadaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Oceanospirillales;Halomonadaceae;Halomonas
Neptuniibacter 10 9 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Oceanospirillales Oceanospirillaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Oceanospirillales;Oceanospirillaceae;Neptuniibacter
Frischella 2 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Orbales Orbaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Orbales;Orbaceae;Frischella
Pseudomonas 6 5 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas
Photobacterium 5 6 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Vibrionales;Vibrionaceae;Photobacterium
Vibrio 8 6 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Vibrionales;Vibrionaceae;Vibrio
Unknown 3092 3087 Unclassified Unknown Unknown Unknown Unknown Unknown Unclassified;Unknown;Unknown;Unknown;Unknown;Unknown;Unknown

Rarefied abundance table for the species rank.

All samples have been randomly subsetted to have the same number of reads.

species barcode13 total superkingdom kingdom phylum class order family genus tax
Alicyclobacillus acidocaldarius 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Alicyclobacillaceae Alicyclobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Alicyclobacillaceae;Alicyclobacillus;Alicyclobacillus acidocaldarius
Alicyclobacillus contaminans 3 3 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Alicyclobacillaceae Alicyclobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Alicyclobacillaceae;Alicyclobacillus;Alicyclobacillus contaminans
Alicyclobacillus hesperidum 2 3 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Alicyclobacillaceae Alicyclobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Alicyclobacillaceae;Alicyclobacillus;Alicyclobacillus hesperidum
Alicyclobacillus kakegawensis 6 7 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Alicyclobacillaceae Alicyclobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Alicyclobacillaceae;Alicyclobacillus;Alicyclobacillus kakegawensis
Alicyclobacillus sacchari 3 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Alicyclobacillaceae Alicyclobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Alicyclobacillaceae;Alicyclobacillus;Alicyclobacillus sacchari
Alicyclobacillus sendaiensis 6 5 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Alicyclobacillaceae Alicyclobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Alicyclobacillaceae;Alicyclobacillus;Alicyclobacillus sendaiensis
Tumebacillus flagellatus 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Alicyclobacillaceae Tumebacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Alicyclobacillaceae;Tumebacillus;Tumebacillus flagellatus
Alkalicoccus urumqiensis 2 1 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Alkalicoccus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Alkalicoccus;Alkalicoccus urumqiensis
Alkalihalobacillus pseudalcaliphilus 3 3 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Alkalihalobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Alkalihalobacillus;Alkalihalobacillus pseudalcaliphilus
Alkalihalobacillus shacheensis 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Alkalihalobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Alkalihalobacillus;Alkalihalobacillus shacheensis
Alteribacillus bidgolensis 3 3 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Alteribacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Alteribacillus;Alteribacillus bidgolensis
Anoxybacillus kaynarcensis 3 3 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Anoxybacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Anoxybacillus;Anoxybacillus kaynarcensis
Bacillus phocaeensis 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Bacillus;Bacillus phocaeensis
Bacillus songklensis 1 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Bacillus;Bacillus songklensis
Caldibacillus pasinlerensis 6 6 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Caldibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Caldibacillus;Caldibacillus pasinlerensis
Geobacillus kaustophilus 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Geobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Geobacillus;Geobacillus kaustophilus
Gracilibacillus salitolerans 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Gracilibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Gracilibacillus;Gracilibacillus salitolerans
Lentibacillus persicus 2 3 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Lentibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Lentibacillus;Lentibacillus persicus
Lysinibacillus cavernae 3 3 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Lysinibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Lysinibacillus;Lysinibacillus cavernae
Margalitia camelliae 4 4 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Margalitia Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Margalitia;Margalitia camelliae
Mesobacillus persicus 3 3 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Mesobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Mesobacillus;Mesobacillus persicus
Metabacillus indicus 6 6 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Metabacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Metabacillus;Metabacillus indicus
Oceanobacillus limi 5 5 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Oceanobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Oceanobacillus;Oceanobacillus limi
Oceanobacillus longus 5 5 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Oceanobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Oceanobacillus;Oceanobacillus longus
Ornithinibacillus halophilus 3 4 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Ornithinibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Ornithinibacillus;Ornithinibacillus halophilus
Peribacillus asahii 2 1 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Peribacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Peribacillus;Peribacillus asahii
Psychrobacillus vulpis 4 4 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Psychrobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Psychrobacillus;Psychrobacillus vulpis
Pueribacillus theae 3 3 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Pueribacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Pueribacillus;Pueribacillus theae
Salicibibacter halophilus 7 7 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Salicibibacter Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Salicibibacter;Salicibibacter halophilus
Saliterribacillus persicus 6 6 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Saliterribacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Saliterribacillus;Saliterribacillus persicus
Siminovitchia fortis 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Siminovitchia Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Siminovitchia;Siminovitchia fortis
Virgibacillus marismortui 5 5 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Virgibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Virgibacillus;Virgibacillus marismortui
Weizmannia coagulans 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Bacillaceae Weizmannia Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Bacillaceae;Weizmannia;Weizmannia coagulans
Listeria innocua 2 1 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Listeriaceae Listeria Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Listeriaceae;Listeria;Listeria innocua
Brevibacillus aydinogluensis 3 3 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Paenibacillaceae Brevibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Paenibacillaceae;Brevibacillus;Brevibacillus aydinogluensis
Brevibacillus sediminis 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Paenibacillaceae Brevibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Paenibacillaceae;Brevibacillus;Brevibacillus sediminis
Cohnella collisoli 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Paenibacillaceae Cohnella Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Paenibacillaceae;Cohnella;Cohnella collisoli
Cohnella fontinalis 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Paenibacillaceae Cohnella Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Paenibacillaceae;Cohnella;Cohnella fontinalis
Fontibacillus pullulanilyticus 3 4 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Paenibacillaceae Fontibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Paenibacillaceae;Fontibacillus;Fontibacillus pullulanilyticus
Paenibacillus aceris 5 6 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Paenibacillaceae Paenibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Paenibacillaceae;Paenibacillus;Paenibacillus aceris
Paenibacillus bovis 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Paenibacillaceae Paenibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Paenibacillaceae;Paenibacillus;Paenibacillus bovis
Paenibacillus larvae 3 4 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Paenibacillaceae Paenibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Paenibacillaceae;Paenibacillus;Paenibacillus larvae
Paenibacillus lutimineralis 1 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Paenibacillaceae Paenibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Paenibacillaceae;Paenibacillus;Paenibacillus lutimineralis
Paenibacillus lutrae 3 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Paenibacillaceae Paenibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Paenibacillaceae;Paenibacillus;Paenibacillus lutrae
Paenibacillus nematophilus 3 3 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Paenibacillaceae Paenibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Paenibacillaceae;Paenibacillus;Paenibacillus nematophilus
Paenibacillus sabinae 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Paenibacillaceae Paenibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Paenibacillaceae;Paenibacillus;Paenibacillus sabinae
Paenibacillus turicensis 21 19 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Paenibacillaceae Paenibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Paenibacillaceae;Paenibacillus;Paenibacillus turicensis
Paenibacillus typhae 6 6 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Paenibacillaceae Paenibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Paenibacillaceae;Paenibacillus;Paenibacillus typhae
Paenibacillus yonginensis 6 6 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Paenibacillaceae Paenibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Paenibacillaceae;Paenibacillus;Paenibacillus yonginensis
Xylanibacillus composti 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Paenibacillaceae Xylanibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Paenibacillaceae;Xylanibacillus;Xylanibacillus composti
Jeotgalibacillus malaysiensis 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Planococcaceae Jeotgalibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Planococcaceae;Jeotgalibacillus;Jeotgalibacillus malaysiensis
Savagea serpentis 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Planococcaceae Savagea Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Planococcaceae;Savagea;Savagea serpentis
Ureibacillus thermosphaericus 2 1 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Planococcaceae Ureibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Planococcaceae;Ureibacillus;Ureibacillus thermosphaericus
Lihuaxuella thermophila 2 3 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Thermoactinomycetaceae Lihuaxuella Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Thermoactinomycetaceae;Lihuaxuella;Lihuaxuella thermophila
Planifilum fulgidum 2 2 Bacteria Bacteria_none Firmicutes Bacilli Bacillales Thermoactinomycetaceae Planifilum Bacteria;Bacteria_none;Firmicutes;Bacilli;Bacillales;Thermoactinomycetaceae;Planifilum;Planifilum fulgidum
Abiotrophia defectiva 10 9 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Aerococcaceae Abiotrophia Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Aerococcaceae;Abiotrophia;Abiotrophia defectiva
Suicoccus acidiformans 5 5 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Aerococcaceae Suicoccus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Aerococcaceae;Suicoccus;Suicoccus acidiformans
Granulicatella adiacens 5 5 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Carnobacteriaceae Granulicatella Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Carnobacteriaceae;Granulicatella;Granulicatella adiacens
Granulicatella elegans 2 2 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Carnobacteriaceae Granulicatella Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Carnobacteriaceae;Granulicatella;Granulicatella elegans
Trichococcus collinsii 5 5 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Carnobacteriaceae Trichococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Carnobacteriaceae;Trichococcus;Trichococcus collinsii
Trichococcus palustris 2 2 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Carnobacteriaceae Trichococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Carnobacteriaceae;Trichococcus;Trichococcus palustris
Trichococcus pasteurii 6 6 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Carnobacteriaceae Trichococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Carnobacteriaceae;Trichococcus;Trichococcus pasteurii
Enterococcus alishanensis 2 2 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus alishanensis
Enterococcus asini 172 167 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus asini
Enterococcus avium 2 2 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus avium
Enterococcus camelliae 3 3 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus camelliae
Enterococcus casseliflavus 6 6 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus casseliflavus
Enterococcus dispar 162 157 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus dispar
Enterococcus durans 945 946 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus durans
Enterococcus faecalis 355 359 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus faecalis
Enterococcus faecium 1825 1851 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus faecium
Enterococcus gallinarum 39 39 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus gallinarum
Enterococcus hirae 951 944 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus hirae
Enterococcus innesii 3 3 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus innesii
Enterococcus italicus 3 2 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus italicus
Enterococcus lactis 42 42 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus lactis
Enterococcus malodoratus 4 4 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus malodoratus
Enterococcus mediterraneensis 42 44 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus mediterraneensis
Enterococcus mundtii 63 64 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus mundtii
Enterococcus pseudoavium 13 13 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus pseudoavium
Enterococcus ratti 3 3 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus ratti
Enterococcus saccharolyticus 51 51 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus saccharolyticus
Enterococcus sulfureus 2 2 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus sulfureus
Enterococcus thailandicus 6 5 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus thailandicus
Enterococcus ureilyticus 2 2 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus ureilyticus
Enterococcus villorum 2 2 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus villorum
Vagococcus carniphilus 2 2 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Enterococcaceae Vagococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Vagococcus;Vagococcus carniphilus
Vagococcus teuberi 2 2 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Enterococcaceae Vagococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Vagococcus;Vagococcus teuberi
Lacticaseibacillus casei 54 52 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus;Lacticaseibacillus casei
Lacticaseibacillus chiayiensis 18 19 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus;Lacticaseibacillus chiayiensis
Lacticaseibacillus paracasei 87 88 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus;Lacticaseibacillus paracasei
Lacticaseibacillus rhamnosus 83 81 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus;Lacticaseibacillus rhamnosus
Lacticaseibacillus saniviri 4 4 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus;Lacticaseibacillus saniviri
Lacticaseibacillus zeae 18 20 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus;Lacticaseibacillus zeae
Lactiplantibacillus argentoratensis 18 17 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus;Lactiplantibacillus argentoratensis
Lactiplantibacillus paraplantarum 2 2 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus;Lactiplantibacillus paraplantarum
Lactiplantibacillus pentosus 38 39 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus;Lactiplantibacillus pentosus
Lactiplantibacillus plajomi 14 14 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus;Lactiplantibacillus plajomi
Lactiplantibacillus plantarum 98 92 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus;Lactiplantibacillus plantarum
Lactobacillus acidophilus 109 108 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus acidophilus
Lactobacillus amylolyticus 2 2 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus amylolyticus
Lactobacillus amylovorus 4 5 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus amylovorus
Lactobacillus crispatus 5 6 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus crispatus
Lactobacillus delbrueckii 46 47 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus delbrueckii
Lactobacillus gallinarum 6 5 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus gallinarum
Lactobacillus gasseri 24 25 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus gasseri
Lactobacillus hamsteri 2 2 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus hamsteri
Lactobacillus helveticus 9 7 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus helveticus
Lactobacillus kefiranofaciens 3 3 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus kefiranofaciens
Lactobacillus paragasseri 5 5 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;Lactobacillus paragasseri
Lentilactobacillus curieae 3 3 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus;Lentilactobacillus curieae
Ligilactobacillus salivarius 20 21 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Ligilactobacillus;Ligilactobacillus salivarius
Limosilactobacillus agrestis 4 4 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus;Limosilactobacillus agrestis
Limosilactobacillus balticus 3 4 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus;Limosilactobacillus balticus
Limosilactobacillus fermentum 132 129 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus;Limosilactobacillus fermentum
Limosilactobacillus reuteri 7 7 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus;Limosilactobacillus reuteri
Liquorilactobacillus satsumensis 58 60 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Liquorilactobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus;Liquorilactobacillus satsumensis
Paucilactobacillus suebicus 8 8 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Paucilactobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Paucilactobacillus;Paucilactobacillus suebicus
Paucilactobacillus wasatchensis 4 5 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Lactobacillaceae Paucilactobacillus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Paucilactobacillus;Paucilactobacillus wasatchensis
Lactococcus allomyrinae 62 64 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Streptococcaceae Lactococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus;Lactococcus allomyrinae
Lactococcus cremoris 313 309 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Streptococcaceae Lactococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus;Lactococcus cremoris
Lactococcus formosensis 11 10 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Streptococcaceae Lactococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus;Lactococcus formosensis
Lactococcus fujiensis 3 3 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Streptococcaceae Lactococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus;Lactococcus fujiensis
Lactococcus garvieae 2 2 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Streptococcaceae Lactococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus;Lactococcus garvieae
Lactococcus lactis 1008 1017 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Streptococcaceae Lactococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus;Lactococcus lactis
Lactococcus protaetiae 195 191 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Streptococcaceae Lactococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus;Lactococcus protaetiae
Streptococcus cristatus 6 6 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus cristatus
Streptococcus equinus 3 3 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus equinus
Streptococcus gordonii 3 3 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus gordonii
Streptococcus lutetiensis 2 1 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus lutetiensis
Streptococcus macedonicus 2 2 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus macedonicus
Streptococcus mitis 4 4 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus mitis
Streptococcus oralis 7 7 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus oralis
Streptococcus penaeicida 2 2 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus penaeicida
Streptococcus salivarius 10 11 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus salivarius
Streptococcus suis 2 2 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus suis
Streptococcus thermophilus 302 305 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus thermophilus
Streptococcus vestibularis 7 6 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus vestibularis
Streptococcus vicugnae 2 2 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus vicugnae
Streptococcus zalophi 3 3 Bacteria Bacteria_none Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Bacteria;Bacteria_none;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus zalophi
Acutalibacter muris 5 5 Bacteria Bacteria_none Firmicutes Clostridia Eubacteriales Oscillospiraceae Acutalibacter Bacteria;Bacteria_none;Firmicutes;Clostridia;Eubacteriales;Oscillospiraceae;Acutalibacter;Acutalibacter muris
Anaerolactibacter massiliensis 2 2 Bacteria Bacteria_none Firmicutes Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Anaerolactibacter Bacteria;Bacteria_none;Firmicutes;Erysipelotrichia;Erysipelotrichales;Erysipelotrichaceae;Anaerolactibacter;Anaerolactibacter massiliensis
Ferruginivarius sediminum 2 2 Bacteria Bacteria_none Proteobacteria Alphaproteobacteria Rhodospirillales Rhodospirillaceae Ferruginivarius Bacteria;Bacteria_none;Proteobacteria;Alphaproteobacteria;Rhodospirillales;Rhodospirillaceae;Ferruginivarius;Ferruginivarius sediminum
Sphingomonas leidyi 2 2 Bacteria Bacteria_none Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Bacteria;Bacteria_none;Proteobacteria;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Sphingomonas;Sphingomonas leidyi
Cupriavidus agavae 11 12 Bacteria Bacteria_none Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Bacteria;Bacteria_none;Proteobacteria;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Cupriavidus;Cupriavidus agavae
Cupriavidus alkaliphilus 2 2 Bacteria Bacteria_none Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Bacteria;Bacteria_none;Proteobacteria;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Cupriavidus;Cupriavidus alkaliphilus
Cupriavidus metallidurans 10 9 Bacteria Bacteria_none Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Bacteria;Bacteria_none;Proteobacteria;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Cupriavidus;Cupriavidus metallidurans
Cupriavidus taiwanensis 2 2 Bacteria Bacteria_none Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Bacteria;Bacteria_none;Proteobacteria;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Cupriavidus;Cupriavidus taiwanensis
Ralstonia pickettii 2 2 Bacteria Bacteria_none Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Ralstonia Bacteria;Bacteria_none;Proteobacteria;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Ralstonia;Ralstonia pickettii
Ralstonia solanacearum 2 2 Bacteria Bacteria_none Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Ralstonia Bacteria;Bacteria_none;Proteobacteria;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Ralstonia;Ralstonia solanacearum
Aquabacterium citratiphilum 9 8 Bacteria Bacteria_none Proteobacteria Betaproteobacteria Burkholderiales Burkholderiales_Incertae_sedis Aquabacterium Bacteria;Bacteria_none;Proteobacteria;Betaproteobacteria;Burkholderiales;Burkholderiales_Incertae_sedis;Aquabacterium;Aquabacterium citratiphilum
Tolumonas auensis 2 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Aeromonadales Aeromonadaceae Tolumonas Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Aeromonadales;Aeromonadaceae;Tolumonas;Tolumonas auensis
Alginatibacterium sediminis 8 8 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Alteromonadales Alteromonadaceae Alginatibacterium Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Alteromonadales;Alteromonadaceae;Alginatibacterium;Alginatibacterium sediminis
Alteromonas australica 2 3 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Alteromonadales Alteromonadaceae Alteromonas Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Alteromonadales;Alteromonadaceae;Alteromonas;Alteromonas australica
Alteromonas mediterranea 151 153 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Alteromonadales Alteromonadaceae Alteromonas Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Alteromonadales;Alteromonadaceae;Alteromonas;Alteromonas mediterranea
Alteromonas oceani 13 12 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Alteromonadales Alteromonadaceae Alteromonas Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Alteromonadales;Alteromonadaceae;Alteromonas;Alteromonas oceani
Glaciecola nitratireducens 2 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Alteromonadales Alteromonadaceae Glaciecola Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Alteromonadales;Alteromonadaceae;Glaciecola;Glaciecola nitratireducens
Glaciecola pallidula 2 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Alteromonadales Alteromonadaceae Glaciecola Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Alteromonadales;Alteromonadaceae;Glaciecola;Glaciecola pallidula
Glaciecola punicea 22 22 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Alteromonadales Alteromonadaceae Glaciecola Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Alteromonadales;Alteromonadaceae;Glaciecola;Glaciecola punicea
Paraglaciecola oceanifecundans 13 12 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Alteromonadales Alteromonadaceae Paraglaciecola Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Alteromonadales;Alteromonadaceae;Paraglaciecola;Paraglaciecola oceanifecundans
Planctobacterium marinum 24 25 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Alteromonadales Alteromonadaceae Planctobacterium Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Alteromonadales;Alteromonadaceae;Planctobacterium;Planctobacterium marinum
Salinimonas sediminis 33 37 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Alteromonadales Alteromonadaceae Salinimonas Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Alteromonadales;Alteromonadaceae;Salinimonas;Salinimonas sediminis
Neiella holothuriorum 32 30 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Alteromonadales Alteromonadales_Incertae_sedis Neiella Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Alteromonadales;Alteromonadales_Incertae_sedis;Neiella;Neiella holothuriorum
Aliidiomarina soli 3 3 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Alteromonadales Idiomarinaceae Aliidiomarina Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Alteromonadales;Idiomarinaceae;Aliidiomarina;Aliidiomarina soli
Corallincola holothuriorum 32 31 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Alteromonadales Psychromonadaceae Corallincola Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Alteromonadales;Psychromonadaceae;Corallincola;Corallincola holothuriorum
Spongiibacter marinus 2 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Cellvibrionales Spongiibacteraceae Spongiibacter Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Cellvibrionales;Spongiibacteraceae;Spongiibacter;Spongiibacter marinus
Spongiibacter tropicus 2 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Cellvibrionales Spongiibacteraceae Spongiibacter Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Cellvibrionales;Spongiibacteraceae;Spongiibacter;Spongiibacter tropicus
Citrobacter rodentium 15 14 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Citrobacter;Citrobacter rodentium
Citrobacter sedlakii 20 19 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Citrobacter;Citrobacter sedlakii
Citrobacter telavivensis 36 35 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Citrobacter;Citrobacter telavivensis
Cronobacter turicensis 32 32 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Cronobacter Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Cronobacter;Cronobacter turicensis
Enterobacter chuandaensis 3 4 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Enterobacter;Enterobacter chuandaensis
Enterobacter quasihormaechei 53 52 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Enterobacter;Enterobacter quasihormaechei
Enterobacter sichuanensis 4 4 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Enterobacter;Enterobacter sichuanensis
Escherichia coli 4 3 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia;Escherichia coli
Escherichia fergusonii 31 32 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia;Escherichia fergusonii
Escherichia marmotae 28 28 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia;Escherichia marmotae
Klebsiella michiganensis 3 3 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella;Klebsiella michiganensis
Kosakonia pseudosacchari 2 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Kosakonia Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Kosakonia;Kosakonia pseudosacchari
Kosakonia quasisacchari 2 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Kosakonia Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Kosakonia;Kosakonia quasisacchari
Kosakonia sacchari 4 4 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Kosakonia Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Kosakonia;Kosakonia sacchari
Leclercia adecarboxylata 3 3 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Leclercia Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Leclercia;Leclercia adecarboxylata
Phytobacter massiliensis 2 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Phytobacter Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Phytobacter;Phytobacter massiliensis
Phytobacter palmae 6 7 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Phytobacter Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Phytobacter;Phytobacter palmae
Pluralibacter pyrinus 35 35 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Pluralibacter Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Pluralibacter;Pluralibacter pyrinus
Pseudenterobacter timonensis 1 1 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Pseudenterobacter Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Pseudenterobacter;Pseudenterobacter timonensis
Pseudocitrobacter vendiensis 34 35 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Pseudocitrobacter Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Pseudocitrobacter;Pseudocitrobacter vendiensis
Salmonella bongori 44 43 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Salmonella;Salmonella bongori
Salmonella enterica 67 65 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Salmonella;Salmonella enterica
Shigella boydii 2 0 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Shigella Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Shigella;Shigella boydii
Shigella sonnei 3 3 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Shigella Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Shigella;Shigella sonnei
Siccibacter colletis 35 35 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Siccibacter Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Siccibacter;Siccibacter colletis
Erwinia billingiae 5 6 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Erwiniaceae Erwinia Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Erwiniaceae;Erwinia;Erwinia billingiae
Erwinia tasmaniensis 2 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Erwiniaceae Erwinia Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Erwiniaceae;Erwinia;Erwinia tasmaniensis
Mixta intestinalis 51 51 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Erwiniaceae Mixta Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Erwiniaceae;Mixta;Mixta intestinalis
Mixta theicola 2 1 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Erwiniaceae Mixta Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Erwiniaceae;Mixta;Mixta theicola
Rosenbergiella australiborealis 4 4 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Erwiniaceae Rosenbergiella Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Erwiniaceae;Rosenbergiella;Rosenbergiella australiborealis
Rosenbergiella collisarenosi 13 14 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Erwiniaceae Rosenbergiella Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Erwiniaceae;Rosenbergiella;Rosenbergiella collisarenosi
Rosenbergiella epipactidis 10 10 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Erwiniaceae Rosenbergiella Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Erwiniaceae;Rosenbergiella;Rosenbergiella epipactidis
Tatumella punctata 2 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Erwiniaceae Tatumella Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Erwiniaceae;Tatumella;Tatumella punctata
Pectobacterium betavasculorum 2 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Pectobacteriaceae Pectobacterium Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Pectobacteriaceae;Pectobacterium;Pectobacterium betavasculorum
Pectobacterium carotovorum 2 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Enterobacterales Pectobacteriaceae Pectobacterium Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Enterobacterales;Pectobacteriaceae;Pectobacterium;Pectobacterium carotovorum
Neptuniibacter caesariensis 11 10 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Oceanospirillales Oceanospirillaceae Neptuniibacter Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Oceanospirillales;Oceanospirillaceae;Neptuniibacter;Neptuniibacter caesariensis
Frischella japonica 2 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Orbales Orbaceae Frischella Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Orbales;Orbaceae;Frischella;Frischella japonica
Pseudomonas knackmussii 2 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas;Pseudomonas knackmussii
Pseudomonas leptonychotis 2 2 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas;Pseudomonas leptonychotis
Photobacterium damselae 3 3 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Vibrionales;Vibrionaceae;Photobacterium;Photobacterium damselae
Photobacterium frigidiphilum 2 1 Bacteria Bacteria_none Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Bacteria;Bacteria_none;Proteobacteria;Gammaproteobacteria;Vibrionales;Vibrionaceae;Photobacterium;Photobacterium frigidiphilum
Unknown 3095 3085 Unclassified Unknown Unknown Unknown Unknown Unknown Unknown Unclassified;Unknown;Unknown;Unknown;Unknown;Unknown;Unknown;Unknown

Alpha Diversity

Sample diversity indices. Indices are calculated from the original abundance table.

Indices barcode13 total
Berger Parker index 0.26 0.26
Effective number of species 22.53 22.53
Fisher's alpha 81.81 81.81
Inverse Simpson's index 1.13 1.13
Pielou's evenness 0.52 0.52
Richness 413.0 413.0
Shannon diversity index 3.11 3.11
Simpson's index 0.89 0.89
Total counts 12662.0 12662.0
Note that the taxon 'Unknown' is considered as a unique taxon.

Sample-based rarefaction curves to display observed taxa richness. Sample size shows the number of reads sampled from the total amount of reads analyzed during the real time analysis. The Y-axis indicates the number of unique taxa at the last analyzed taxonomic rank in those subsampled reads.

Note that Unknown taxon is considered as a unique taxon.
This plot includes all the counts (except Unknown), previous to apply any filter threshold based on abundances.

Software versions

Name Version
pysam 0.21.0
pandas 2.0.3
fastcat 0.15.1
minimap2 2.26-r1175
samtools 1.18
taxonkit v0.15.1
Kraken 2.1.3

Workflow parameters

Key Value
help False
version False
fastq None
bam /home/artem/katya_demux/barcode13.bam
sample None
sample_sheet None
classifier minimap2
exclude_host None
max_len 1800
min_len 1200
min_read_qual 10
threads 16
server_threads 2
kraken_clients 2
taxonomy None
reference None
ref2taxid None
database None
taxonomic_rank S
minimap2filter None
minimap2exclude False
keep_bam False
split_prefix False
minimap2_by_reference False
store_dir store_dir
out_dir /home/artem/katya_demux_out
bracken_length None
port 8080
host localhost
external_kraken2 False
kraken2_memory_mapping False
include_kraken2_assignments False
kraken2_confidence 0
batch_size 0
real_time False
read_limit None
database_set ncbi_16s_18s
database_sets {'ncbi_16s_18s': {'reference': 'https://ont-exd-int-s3-euwst1-epi2me-labs.s3.amazonaws.com/wf-metagenomics/ncbi_16s_18s/ncbi_targeted_loci_16s_18s.fna', 'database': 'https://ont-exd-int-s3-euwst1-epi2me-labs.s3.amazonaws.com/wf-metagenomics/ncbi_16s_18s/ncbi_targeted_loci_kraken2.tar.gz', 'ref2taxid': 'https://ont-exd-int-s3-euwst1-epi2me-labs.s3.amazonaws.com/wf-metagenomics/ncbi_16s_18s/ref2taxid.targloci.tsv', 'taxonomy': 'https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump_archive/taxdmp_2023-01-01.zip'}, 'ncbi_16s_18s_28s_ITS': {'reference': 'https://ont-exd-int-s3-euwst1-epi2me-labs.s3.amazonaws.com/wf-metagenomics/ncbi_16s_18s_28s_ITS/ncbi_16s_18s_28s_ITS.fna', 'database': 'https://ont-exd-int-s3-euwst1-epi2me-labs.s3.amazonaws.com/wf-metagenomics/ncbi_16s_18s_28s_ITS/ncbi_16s_18s_28s_ITS_kraken2.tar.gz', 'ref2taxid': 'https://ont-exd-int-s3-euwst1-epi2me-labs.s3.amazonaws.com/wf-metagenomics/ncbi_16s_18s_28s_ITS/ref2taxid.ncbi_16s_18s_28s_ITS.tsv', 'taxonomy': 'https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump_archive/taxdmp_2023-01-01.zip'}, 'SILVA_138_1': {'database': None}}
amr False
amr_db resfinder
amr_minid 80
amr_mincov 80
abundance_threshold 1
n_taxa_barplot 9
aws_image_prefix None
aws_queue None
disable_ping False
monochrome_logs False
validate_params True
show_hidden_params False
analyse_unclassified False
schema_ignore_params show_hidden_params,validate_params,monochrome_logs,aws_queue,aws_image_prefix,wf,amr,amr_db,amr_minid,amr_mincov,database_sets
wf {'stats': True, 'keep_unaligned': True, 'example_cmd': ['--fastq wf-16s-demo/test_data', '--minimap2_by_reference'], 'agent': None, 'container_sha': 'sha44a6dacff5f2001d917b774647bb4cbc1b53bc76', 'common_sha': 'shaa17469f05b9753f7e63525d2826202b73f475e6c'}